Wall clock time and date at job start Tue Mar 31 2020 00:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47334 * 2 1 4 4 H 1.08997 * 109.47137 * 305.00157 * 3 2 1 5 5 C 1.50704 * 109.47104 * 185.00348 * 3 2 1 6 6 H 1.08005 * 119.99959 * 239.99579 * 5 3 2 7 7 C 1.37872 * 120.00266 * 60.00171 * 5 3 2 8 8 N 1.31517 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47181 * 90.00171 * 9 7 5 11 11 H 1.48503 * 109.47078 * 209.99655 * 9 7 5 12 12 H 1.48494 * 109.47036 * 329.99781 * 9 7 5 13 13 N 1.46497 * 109.47106 * 65.00150 * 3 2 1 14 14 C 1.34776 * 120.00399 * 275.00061 * 13 3 2 15 15 O 1.21593 * 119.99755 * 359.97438 * 14 13 3 16 16 C 1.47548 * 120.00235 * 179.97438 * 14 13 3 17 17 C 1.40104 * 120.86672 * 269.99854 * 16 14 13 18 18 C 1.50699 * 120.49659 * 0.02562 * 17 16 14 19 19 N 1.31964 * 119.01030 * 179.97438 * 17 16 14 20 20 C 1.32668 * 120.89831 * 0.02562 * 19 17 16 21 21 N 1.37938 * 119.04121 * 179.97438 * 20 19 17 22 22 N 1.32670 * 121.91612 * 359.97438 * 20 19 17 23 23 C 1.31957 * 120.89837 * 0.02562 * 22 20 19 24 24 C 1.50695 * 120.49731 * 180.02562 * 23 22 20 25 25 H 1.09008 * 109.46625 * 299.99712 * 1 2 3 26 26 H 1.08990 * 109.47469 * 59.99520 * 1 2 3 27 27 H 1.08997 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47105 * 240.00063 * 2 1 3 29 29 H 1.09001 * 109.47617 * 120.00012 * 2 1 3 30 30 H 0.96999 * 120.00062 * 180.02562 * 8 7 5 31 31 H 0.97007 * 120.00012 * 95.00205 * 13 3 2 32 32 H 1.08997 * 109.46974 * 269.97673 * 18 17 16 33 33 H 1.08998 * 109.47169 * 29.97611 * 18 17 16 34 34 H 1.08995 * 109.47577 * 149.97564 * 18 17 16 35 35 H 0.96998 * 119.99884 * 359.97438 * 21 20 19 36 36 H 0.96996 * 119.99930 * 179.97438 * 21 20 19 37 37 H 1.09006 * 109.47400 * 269.98270 * 24 23 22 38 38 H 1.09003 * 109.47240 * 29.97754 * 24 23 22 39 39 H 1.09000 * 109.47671 * 149.98267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1730 9 14 6.0049 0.8812 -1.3820 10 1 6.5548 -0.3503 -0.7605 11 1 6.3829 0.9223 -2.8175 12 1 6.5569 2.0737 -0.6904 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3412 2.6327 0.4319 16 6 0.0448 3.3236 2.6281 17 6 -0.5916 2.6042 3.6481 18 6 -0.8908 1.1371 3.4773 19 7 -0.9244 3.2303 4.7611 20 6 -0.6644 4.5215 4.9202 21 7 -1.0294 5.1377 6.0990 22 7 -0.0636 5.2373 3.9785 23 6 0.3008 4.6852 2.8367 24 6 0.9832 5.5066 1.7734 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0618 -2.9496 31 1 2.2721 2.1231 1.9978 32 1 -1.8777 1.0172 3.0306 33 1 -0.1406 0.6866 2.8273 34 1 -0.8703 0.6464 4.4503 35 1 -1.4698 4.6277 6.7968 36 1 -0.8458 6.0811 6.2303 37 1 0.2331 5.9394 1.1113 38 1 1.5568 6.3053 2.2436 39 1 1.6532 4.8695 1.1961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358063094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:42 Heat of formation + Delta-G solvation = 0.649710 kcal Electronic energy + Delta-G solvation = -22184.250571 eV Core-core repulsion = 18933.527243 eV Total energy + Delta-G solvation = -3250.723328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09149 -38.81095 -35.42770 -34.90400 -34.75474 -32.40487 -31.41680 -30.66237 -29.32591 -27.75405 -26.79828 -23.77618 -22.81011 -21.78480 -20.63714 -19.38097 -18.22143 -17.64149 -17.14426 -15.91852 -15.82828 -15.57722 -15.12013 -14.40608 -14.19902 -13.75278 -13.35488 -13.31422 -12.91101 -12.87669 -12.71688 -12.45566 -12.03928 -11.89320 -11.56075 -11.40463 -11.24774 -11.02137 -10.83343 -10.63629 -10.32862 -10.22715 -10.18425 -9.64047 -9.11739 -9.10232 -9.04673 -8.51501 -8.23379 -7.85676 -6.13688 -4.23125 1.11269 1.18918 3.03795 3.23429 3.26626 3.31218 3.33075 3.80290 4.08009 4.12232 4.38063 4.46859 4.84516 5.17733 5.25561 5.46466 5.49827 5.62991 5.67096 5.70048 5.90878 5.92193 6.14488 6.35448 6.37670 6.46526 6.64524 6.88367 7.01814 7.12354 7.18206 7.30646 7.34680 7.41382 7.60554 7.71757 7.88143 8.16292 8.35767 8.62975 8.75590 9.08181 9.44377 10.91490 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.004974 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.743330 B = 5627.730942 C = 6181.627417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.566 3.434 15 O -0.538 6.538 16 C -0.284 4.284 17 C 0.253 3.747 18 C -0.114 4.114 19 N -0.577 5.577 20 C 0.573 3.427 21 N -0.821 5.821 22 N -0.577 5.577 23 C 0.254 3.746 24 C -0.112 4.112 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.413 0.587 36 H 0.413 0.587 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 5.863 12.955 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.349 3.651 15 O -0.416 6.416 16 C -0.295 4.295 17 C 0.105 3.895 18 C -0.171 4.171 19 N -0.302 5.302 20 C 0.214 3.786 21 N -0.369 5.369 22 N -0.302 5.302 23 C 0.106 3.894 24 C -0.170 4.170 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.244 0.756 36 H 0.244 0.756 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.744 6.169 12.906 15.814 hybrid contribution 1.352 -0.196 -0.035 1.366 sum -5.392 5.972 12.871 15.179 Atomic orbital electron populations 1.21930 0.98386 0.98181 1.01472 1.21944 0.92595 0.99758 1.02394 1.18838 0.94262 0.89236 0.80832 0.93116 1.21219 0.90651 1.39106 1.06276 0.92083 1.24863 0.98508 0.94797 0.95366 1.69889 1.35100 1.37522 1.09363 0.86476 0.84977 0.78453 0.77369 1.20582 1.21092 1.19872 1.46585 1.14178 1.55338 1.18572 1.17541 0.82966 0.78824 0.85812 1.90780 1.51613 1.59744 1.39463 1.21361 1.11898 0.96721 0.99526 1.21433 0.86049 0.96305 0.85664 1.20954 1.03936 0.88337 1.03898 1.67678 1.27781 1.09035 1.25686 1.19298 0.86911 0.85374 0.87011 1.41586 1.66636 1.13685 1.14995 1.67683 1.20271 1.39276 1.02923 1.21466 0.87513 0.89885 0.90490 1.20890 1.00731 0.99958 0.95385 0.93954 0.93085 0.95749 0.88214 0.94968 0.92555 0.77916 0.89169 0.89156 0.89773 0.75606 0.75595 0.89167 0.89780 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.71 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.48 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.58 8.73 -34.44 -0.30 -13.88 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.99 11.29 55.43 0.63 -23.37 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.70 -13.99 5.02 -55.97 -0.28 -14.27 16 14 C 0.57 11.07 3.15 -12.46 -0.04 11.03 16 15 O -0.54 -12.30 14.24 5.28 0.08 -12.23 16 16 C -0.28 -4.87 5.66 -104.70 -0.59 -5.46 16 17 C 0.25 4.02 6.87 -81.84 -0.56 3.46 16 18 C -0.11 -1.57 9.64 36.01 0.35 -1.22 16 19 N -0.58 -8.71 10.37 -9.89 -0.10 -8.82 16 20 C 0.57 8.13 8.65 -323.03 -2.79 5.33 16 21 N -0.82 -7.79 9.04 29.73 0.27 -7.53 16 22 N -0.58 -8.77 10.37 -9.89 -0.10 -8.87 16 23 C 0.25 4.08 6.87 -81.84 -0.56 3.52 16 24 C -0.11 -1.58 9.85 36.00 0.35 -1.23 16 25 H 0.04 0.85 3.92 -51.92 -0.20 0.64 16 26 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.10 2.59 5.95 -51.92 -0.31 2.28 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 7.06 8.52 -40.82 -0.35 6.72 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.35 5.72 -51.93 -0.30 1.05 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.41 3.06 8.94 -40.82 -0.36 2.70 16 36 H 0.41 3.08 8.94 -40.82 -0.36 2.71 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.39 7.17 -51.93 -0.37 1.02 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -30.28 321.60 -9.06 -39.34 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.14 Total: 12.04 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -4.23 Total: 3.72 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.41 Total: -62.85 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.28 -9.06 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.985 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds