Wall clock time and date at job start Tue Mar 31 2020 00:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47334 * 2 1 4 4 H 1.08997 * 109.47137 * 305.00157 * 3 2 1 5 5 C 1.50704 * 109.47104 * 185.00348 * 3 2 1 6 6 H 1.08005 * 119.99959 * 239.99579 * 5 3 2 7 7 C 1.37872 * 120.00266 * 60.00171 * 5 3 2 8 8 N 1.31517 * 119.99920 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00149 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47181 * 90.00171 * 9 7 5 11 11 H 1.48503 * 109.47078 * 209.99655 * 9 7 5 12 12 H 1.48494 * 109.47036 * 329.99781 * 9 7 5 13 13 N 1.46497 * 109.47106 * 65.00150 * 3 2 1 14 14 C 1.34776 * 120.00399 * 275.00061 * 13 3 2 15 15 O 1.21593 * 119.99755 * 359.97438 * 14 13 3 16 16 C 1.47548 * 120.00235 * 179.97438 * 14 13 3 17 17 C 1.40104 * 120.86672 * 269.99854 * 16 14 13 18 18 C 1.50699 * 120.49659 * 0.02562 * 17 16 14 19 19 N 1.31964 * 119.01030 * 179.97438 * 17 16 14 20 20 C 1.32668 * 120.89831 * 0.02562 * 19 17 16 21 21 N 1.37938 * 119.04121 * 179.97438 * 20 19 17 22 22 N 1.32670 * 121.91612 * 359.97438 * 20 19 17 23 23 C 1.31957 * 120.89837 * 0.02562 * 22 20 19 24 24 C 1.50695 * 120.49731 * 180.02562 * 23 22 20 25 25 H 1.09008 * 109.46625 * 299.99712 * 1 2 3 26 26 H 1.08990 * 109.47469 * 59.99520 * 1 2 3 27 27 H 1.08997 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47105 * 240.00063 * 2 1 3 29 29 H 1.09001 * 109.47617 * 120.00012 * 2 1 3 30 30 H 0.96999 * 120.00062 * 180.02562 * 8 7 5 31 31 H 0.97007 * 120.00012 * 95.00205 * 13 3 2 32 32 H 1.08997 * 109.46974 * 269.97673 * 18 17 16 33 33 H 1.08998 * 109.47169 * 29.97611 * 18 17 16 34 34 H 1.08995 * 109.47577 * 149.97564 * 18 17 16 35 35 H 0.96998 * 119.99884 * 359.97438 * 21 20 19 36 36 H 0.96996 * 119.99930 * 179.97438 * 21 20 19 37 37 H 1.09006 * 109.47400 * 269.98270 * 24 23 22 38 38 H 1.09003 * 109.47240 * 29.97754 * 24 23 22 39 39 H 1.09000 * 109.47671 * 149.98267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3366 -2.1730 9 14 6.0049 0.8812 -1.3820 10 1 6.5548 -0.3503 -0.7605 11 1 6.3829 0.9223 -2.8175 12 1 6.5569 2.0737 -0.6904 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6644 1.3671 15 8 -0.3412 2.6327 0.4319 16 6 0.0448 3.3236 2.6281 17 6 -0.5916 2.6042 3.6481 18 6 -0.8908 1.1371 3.4773 19 7 -0.9244 3.2303 4.7611 20 6 -0.6644 4.5215 4.9202 21 7 -1.0294 5.1377 6.0990 22 7 -0.0636 5.2373 3.9785 23 6 0.3008 4.6852 2.8367 24 6 0.9832 5.5066 1.7734 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0618 -2.9496 31 1 2.2721 2.1231 1.9978 32 1 -1.8777 1.0172 3.0306 33 1 -0.1406 0.6866 2.8273 34 1 -0.8703 0.6464 4.4503 35 1 -1.4698 4.6277 6.7968 36 1 -0.8458 6.0811 6.2303 37 1 0.2331 5.9394 1.1113 38 1 1.5568 6.3053 2.2436 39 1 1.6532 4.8695 1.1961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358063094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:39 Heat of formation + Delta-G solvation = -19.533229 kcal Electronic energy + Delta-G solvation = -22185.125769 eV Core-core repulsion = 18933.527243 eV Total energy + Delta-G solvation = -3251.598526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.29940 -40.39435 -36.96262 -36.26990 -35.91809 -34.25042 -32.95640 -32.05533 -30.46517 -29.19199 -28.46940 -25.31166 -24.37935 -22.93244 -22.26729 -21.15109 -19.36141 -19.30158 -18.18608 -17.63372 -17.29341 -16.84115 -16.50293 -16.12805 -15.79230 -15.05189 -14.81179 -14.58512 -14.45688 -14.08857 -13.96246 -13.80912 -13.48471 -13.37589 -13.13543 -13.07130 -12.89244 -12.72992 -12.63279 -12.13247 -12.02530 -11.66204 -11.49768 -11.37584 -11.00654 -10.72410 -10.47946 -10.29874 -9.62516 -9.33555 -8.12188 -6.28735 -0.09145 -0.00128 1.47173 1.48284 1.57909 1.71932 2.05367 2.37995 2.58503 2.74085 2.93603 3.17619 3.31346 3.76522 4.04929 4.06032 4.31844 4.52705 4.56389 4.58331 4.61429 4.65632 4.79216 4.80560 4.83605 5.04889 5.12722 5.27285 5.34341 5.51266 5.59567 5.64430 5.81178 5.86045 5.95264 6.21725 6.25489 6.29451 6.78045 6.95953 7.31691 7.35844 7.53855 8.92799 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.004974 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.743330 B = 5627.730942 C = 6181.627417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.693 5.693 14 C 0.579 3.421 15 O -0.575 6.575 16 C -0.309 4.309 17 C 0.255 3.745 18 C -0.112 4.112 19 N -0.581 5.581 20 C 0.566 3.434 21 N -0.795 5.795 22 N -0.582 5.582 23 C 0.253 3.747 24 C -0.109 4.109 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.264 0.736 31 H 0.399 0.601 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.426 0.574 36 H 0.425 0.575 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.694 6.401 15.327 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.087 0.913 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.191 1.191 13 N -0.341 5.341 14 C 0.363 3.637 15 O -0.455 6.455 16 C -0.321 4.321 17 C 0.106 3.894 18 C -0.169 4.169 19 N -0.306 5.306 20 C 0.207 3.793 21 N -0.344 5.344 22 N -0.307 5.307 23 C 0.105 3.895 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.259 0.741 36 H 0.259 0.741 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.480 6.744 15.368 17.991 hybrid contribution 1.195 -0.286 -0.675 1.402 sum -5.286 6.458 14.694 16.898 Atomic orbital electron populations 1.21794 0.96884 0.99395 1.00741 1.21787 0.93883 0.98945 1.01410 1.18435 0.93591 0.89330 0.81008 0.97801 1.21543 0.91437 1.38881 1.06556 0.91275 1.25672 1.02840 0.94458 0.95064 1.70038 1.36864 1.38311 1.09859 0.85448 0.79678 0.78749 0.77070 1.19897 1.21341 1.19060 1.46324 1.14838 1.55296 1.17601 1.17763 0.81970 0.77735 0.86201 1.90759 1.52566 1.61011 1.41191 1.21102 1.14650 0.97441 0.98907 1.21698 0.85168 0.97102 0.85432 1.20978 1.03647 0.87280 1.04961 1.67783 1.28232 1.09417 1.25139 1.19740 0.86294 0.85409 0.87905 1.41615 1.64869 1.14364 1.13557 1.67772 1.20980 1.39091 1.02841 1.21680 0.87154 0.89604 0.91109 1.20890 1.00658 1.00034 0.95060 0.92873 0.95616 0.93450 0.90989 0.93927 0.92647 0.76645 0.88598 0.90513 0.87439 0.74105 0.74137 0.88704 0.87545 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.58 16 3 C 0.28 13.80 2.24 44.25 0.10 13.90 16 4 H 0.00 0.24 7.58 -2.39 -0.02 0.22 16 5 C -0.55 -28.03 8.73 25.60 0.22 -27.80 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.05 5.29 84.65 0.45 1.50 16 8 N -0.91 -50.90 11.29 21.45 0.24 -50.66 16 9 Si 0.97 41.30 29.54 68.60 2.03 43.32 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.69 -28.08 5.02 -449.26 -2.25 -30.34 16 14 C 0.58 22.93 3.15 86.70 0.27 23.21 16 15 O -0.57 -27.07 14.24 -4.01 -0.06 -27.13 16 16 C -0.31 -10.44 5.66 -19.91 -0.11 -10.55 16 17 C 0.25 7.71 6.87 42.99 0.30 8.01 16 18 C -0.11 -2.89 9.64 71.24 0.69 -2.21 16 19 N -0.58 -16.23 10.37 -185.21 -1.92 -18.15 16 20 C 0.57 14.67 8.65 261.56 2.26 16.93 16 21 N -0.79 -12.60 9.04 -59.86 -0.54 -13.14 16 22 N -0.58 -16.53 10.37 -185.21 -1.92 -18.45 16 23 C 0.25 7.86 6.87 42.99 0.30 8.15 16 24 C -0.11 -3.01 9.85 71.23 0.70 -2.30 16 25 H 0.05 2.14 3.92 -2.38 -0.01 2.13 16 26 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.07 3.85 5.95 -2.38 -0.01 3.83 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.40 14.46 8.52 -92.70 -0.79 13.67 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 2.21 5.72 -2.39 -0.01 2.19 16 34 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.43 4.87 8.94 -92.71 -0.83 4.04 16 36 H 0.43 4.94 8.94 -92.71 -0.83 4.11 16 37 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 38 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.07 2.25 7.17 -2.39 -0.02 2.23 16 Total: -1.00 -65.76 321.60 0.20 -65.57 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -1.33 Total: 30.74 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 5.95 Total: 18.24 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -6.40 Total: -130.74 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -65.76 0.20 -65.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.033 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds