Wall clock time and date at job start Tue Mar 31 2020 00:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47363 * 2 1 4 4 H 1.08997 * 109.47406 * 53.85234 * 3 2 1 5 5 C 1.50704 * 109.47412 * 173.85223 * 3 2 1 6 6 H 1.07996 * 119.99969 * 114.31251 * 5 3 2 7 7 C 1.37877 * 119.99915 * 294.30967 * 5 3 2 8 8 N 1.31513 * 120.00012 * 153.90827 * 7 5 3 9 9 Si 1.86801 * 119.99898 * 333.91560 * 7 5 3 10 10 H 1.48502 * 109.47041 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47154 * 299.99501 * 9 7 5 12 12 H 1.48501 * 109.47258 * 60.00015 * 9 7 5 13 13 N 1.46505 * 109.47321 * 293.85520 * 3 2 1 14 14 C 1.34771 * 120.00382 * 84.99518 * 13 3 2 15 15 O 1.21594 * 119.99630 * 0.02562 * 14 13 3 16 16 C 1.47554 * 120.00325 * 180.02562 * 14 13 3 17 17 C 1.40103 * 120.86602 * 89.71980 * 16 14 13 18 18 C 1.50703 * 120.49482 * 359.97438 * 17 16 14 19 19 N 1.31961 * 119.00887 * 179.71413 * 17 16 14 20 20 C 1.32673 * 120.89987 * 0.57858 * 19 17 16 21 21 N 1.37927 * 119.04247 * 179.72208 * 20 19 17 22 22 N 1.32667 * 121.91195 * 359.69776 * 20 19 17 23 23 C 1.31961 * 120.89814 * 359.97438 * 22 20 19 24 24 C 1.50709 * 120.49342 * 180.02562 * 23 22 20 25 25 H 1.08993 * 109.46906 * 299.99912 * 1 2 3 26 26 H 1.09003 * 109.46746 * 59.99987 * 1 2 3 27 27 H 1.08999 * 109.47125 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46833 * 239.99835 * 2 1 3 29 29 H 1.08994 * 109.47080 * 120.00523 * 2 1 3 30 30 H 0.97005 * 119.99796 * 354.97653 * 8 7 5 31 31 H 0.96999 * 119.99300 * 264.99907 * 13 3 2 32 32 H 1.08998 * 109.47626 * 89.99532 * 18 17 16 33 33 H 1.09005 * 109.46608 * 209.99592 * 18 17 16 34 34 H 1.08997 * 109.46866 * 329.98866 * 18 17 16 35 35 H 0.97008 * 120.00123 * 179.97438 * 21 20 19 36 36 H 0.97003 * 120.00608 * 359.97038 * 21 20 19 37 37 H 1.09000 * 109.46604 * 269.98142 * 24 23 22 38 38 H 1.09001 * 109.47006 * 29.97962 * 24 23 22 39 39 H 1.08995 * 109.47162 * 149.98212 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5897 1.9871 0.8298 5 6 3.5394 1.4451 0.1522 6 1 4.1634 1.8005 -0.6545 7 6 4.1145 0.9940 1.3212 8 7 5.3375 0.5106 1.3086 9 14 3.1564 1.0692 2.9231 10 1 3.9912 0.5270 4.0251 11 1 2.7987 2.4795 3.2202 12 1 1.9174 0.2602 2.7973 13 7 1.6762 2.0891 -1.2632 14 6 0.4614 2.6551 -1.4052 15 8 -0.3325 2.6295 -0.4846 16 6 0.0948 3.3059 -2.6777 17 6 -0.5170 2.5785 -3.7069 18 6 -0.8135 1.1110 -3.5345 19 7 -0.8345 3.1986 -4.8276 20 6 -0.5716 4.4888 -4.9904 21 7 -0.9148 5.0972 -6.1797 22 7 0.0114 5.2108 -4.0423 23 6 0.3543 4.6662 -2.8902 24 6 1.0156 5.4951 -1.8193 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.8080 0.4037 0.4671 31 1 2.3097 2.1098 -1.9975 32 1 -1.8089 0.9890 -3.1075 33 1 -0.7709 0.6154 -4.5044 34 1 -0.0749 0.6671 -2.8670 35 1 -0.7293 6.0400 -6.3135 36 1 -1.3416 4.5825 -6.8825 37 1 2.0974 5.4579 -1.9474 38 1 0.6758 6.5278 -1.8974 39 1 0.7520 5.0990 -0.8387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358063096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:47 Heat of formation + Delta-G solvation = -0.169171 kcal Electronic energy + Delta-G solvation = -22252.785716 eV Core-core repulsion = 19002.026879 eV Total energy + Delta-G solvation = -3250.758837 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.17454 -38.98759 -35.55501 -35.04687 -34.82635 -32.48876 -31.72908 -30.91665 -29.40990 -27.87458 -26.99669 -23.70582 -22.36599 -21.85496 -20.88666 -19.56399 -18.29967 -18.10020 -17.23982 -16.61717 -15.95162 -15.72800 -15.19730 -14.48414 -13.92272 -13.74100 -13.44706 -13.39149 -12.99264 -12.94737 -12.72065 -12.52245 -12.41174 -12.22092 -12.05434 -11.67438 -11.54668 -10.82367 -10.71579 -10.68327 -10.44075 -10.29718 -9.87851 -9.81065 -9.29065 -9.18649 -9.18147 -8.32716 -8.25819 -8.12103 -6.62660 -4.21808 1.03306 1.11959 2.97544 3.10302 3.40042 3.45271 3.60369 3.72946 4.00681 4.01639 4.38765 4.43022 4.77105 5.06468 5.17223 5.34476 5.38039 5.53735 5.60393 5.63657 5.81542 5.84261 6.03231 6.07641 6.11774 6.24085 6.31098 6.67341 6.78113 6.81890 6.94037 7.03337 7.06561 7.23816 7.35182 7.37986 7.65485 8.23270 8.29148 8.44112 8.67967 8.92992 9.43091 10.75160 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.005144 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.839480 B = 5441.732401 C = 5828.733976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.132 4.132 3 C 0.250 3.750 4 H 0.042 0.958 5 C -0.629 4.629 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.886 5.886 9 Si 1.028 2.972 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.692 5.692 14 C 0.567 3.433 15 O -0.541 6.541 16 C -0.287 4.287 17 C 0.254 3.746 18 C -0.114 4.114 19 N -0.577 5.577 20 C 0.574 3.426 21 N -0.820 5.820 22 N -0.576 5.576 23 C 0.257 3.743 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.271 0.729 31 H 0.393 0.607 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.414 0.586 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.587 5.748 -11.936 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C 0.147 3.853 4 H 0.059 0.941 5 C -0.666 4.666 6 H 0.081 0.919 7 C -0.158 4.158 8 N -0.517 5.517 9 Si 0.855 3.145 10 H -0.209 1.209 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.339 5.339 14 C 0.350 3.650 15 O -0.419 6.419 16 C -0.298 4.298 17 C 0.106 3.894 18 C -0.171 4.171 19 N -0.302 5.302 20 C 0.216 3.784 21 N -0.368 5.368 22 N -0.301 5.301 23 C 0.108 3.892 24 C -0.171 4.171 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.245 0.755 36 H 0.244 0.756 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.231 5.859 -10.478 16.440 hybrid contribution 0.334 0.163 -1.794 1.832 sum -10.898 6.022 -12.272 17.482 Atomic orbital electron populations 1.21980 0.97449 0.99001 1.02192 1.22238 0.93659 0.99685 1.01495 1.19062 0.95951 0.88554 0.81758 0.94050 1.21963 0.89663 1.50263 1.04726 0.91925 1.25586 0.96669 0.91648 1.01942 1.70873 1.13704 1.36280 1.30837 0.84245 0.76079 0.77679 0.76504 1.20889 1.20623 1.19879 1.46347 1.13975 1.55390 1.18150 1.17602 0.82875 0.78625 0.85889 1.90771 1.50480 1.59774 1.40896 1.21279 1.12540 0.96761 0.99196 1.21422 0.86013 0.96277 0.85663 1.20947 1.03844 0.88349 1.03975 1.67681 1.27587 1.09256 1.25629 1.19303 0.86795 0.85329 0.87000 1.41600 1.67527 1.13850 1.13810 1.67696 1.20622 1.39249 1.02532 1.21471 0.87191 0.89908 0.90585 1.20902 1.01026 0.99656 0.95476 0.92945 0.92997 0.94982 0.93112 0.91780 0.91853 0.77428 0.89112 0.89659 0.89343 0.75530 0.75552 0.88908 0.89721 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.54 37.16 0.32 -2.56 16 2 C -0.13 -2.83 5.37 -26.73 -0.14 -2.97 16 3 C 0.25 5.72 1.83 -69.08 -0.13 5.59 16 4 H 0.04 1.03 6.12 -51.93 -0.32 0.71 16 5 C -0.63 -16.36 8.92 -34.44 -0.31 -16.67 16 6 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 7 C 0.05 1.36 5.15 -17.82 -0.09 1.27 16 8 N -0.89 -25.57 13.70 55.43 0.76 -24.81 16 9 Si 1.03 24.34 26.56 -169.99 -4.51 19.83 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.12 6.36 56.52 0.36 -5.77 16 13 N -0.69 -13.52 5.03 -55.97 -0.28 -13.80 16 14 C 0.57 10.69 3.17 -12.46 -0.04 10.65 16 15 O -0.54 -11.70 14.25 5.28 0.08 -11.63 16 16 C -0.29 -4.78 5.66 -104.70 -0.59 -5.37 16 17 C 0.25 3.91 6.87 -81.84 -0.56 3.35 16 18 C -0.11 -1.49 9.68 36.01 0.35 -1.14 16 19 N -0.58 -8.50 10.37 -9.89 -0.10 -8.60 16 20 C 0.57 7.98 8.65 -323.04 -2.80 5.19 16 21 N -0.82 -7.58 9.04 29.73 0.27 -7.31 16 22 N -0.58 -8.61 10.37 -9.89 -0.10 -8.71 16 23 C 0.26 4.03 6.87 -81.83 -0.56 3.47 16 24 C -0.11 -1.57 9.85 36.01 0.35 -1.21 16 25 H 0.05 1.07 7.91 -51.93 -0.41 0.66 16 26 H 0.05 0.97 4.07 -51.93 -0.21 0.75 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.45 5.78 -51.93 -0.30 1.15 16 30 H 0.27 7.76 8.73 -40.82 -0.36 7.40 16 31 H 0.39 7.17 8.51 -40.82 -0.35 6.82 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.24 5.84 -51.93 -0.30 0.94 16 35 H 0.41 2.99 8.94 -40.82 -0.36 2.63 16 36 H 0.41 2.96 8.94 -40.82 -0.36 2.60 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.36 7.18 -51.93 -0.37 0.98 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -31.09 319.27 -8.43 -39.52 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.14 Total: 11.12 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -4.20 Total: -0.41 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.54 Total: -63.24 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -4.51 Total: 19.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.09 -8.43 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.351 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds