Wall clock time and date at job start Tue Mar 31 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47363 * 2 1 4 4 H 1.08997 * 109.47406 * 53.85234 * 3 2 1 5 5 C 1.50704 * 109.47412 * 173.85223 * 3 2 1 6 6 H 1.07996 * 119.99969 * 114.31251 * 5 3 2 7 7 C 1.37877 * 119.99915 * 294.30967 * 5 3 2 8 8 N 1.31513 * 120.00012 * 153.90827 * 7 5 3 9 9 Si 1.86801 * 119.99898 * 333.91560 * 7 5 3 10 10 H 1.48502 * 109.47041 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47154 * 299.99501 * 9 7 5 12 12 H 1.48501 * 109.47258 * 60.00015 * 9 7 5 13 13 N 1.46505 * 109.47321 * 293.85520 * 3 2 1 14 14 C 1.34771 * 120.00382 * 84.99518 * 13 3 2 15 15 O 1.21594 * 119.99630 * 0.02562 * 14 13 3 16 16 C 1.47554 * 120.00325 * 180.02562 * 14 13 3 17 17 C 1.40103 * 120.86602 * 89.71980 * 16 14 13 18 18 C 1.50703 * 120.49482 * 359.97438 * 17 16 14 19 19 N 1.31961 * 119.00887 * 179.71413 * 17 16 14 20 20 C 1.32673 * 120.89987 * 0.57858 * 19 17 16 21 21 N 1.37927 * 119.04247 * 179.72208 * 20 19 17 22 22 N 1.32667 * 121.91195 * 359.69776 * 20 19 17 23 23 C 1.31961 * 120.89814 * 359.97438 * 22 20 19 24 24 C 1.50709 * 120.49342 * 180.02562 * 23 22 20 25 25 H 1.08993 * 109.46906 * 299.99912 * 1 2 3 26 26 H 1.09003 * 109.46746 * 59.99987 * 1 2 3 27 27 H 1.08999 * 109.47125 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46833 * 239.99835 * 2 1 3 29 29 H 1.08994 * 109.47080 * 120.00523 * 2 1 3 30 30 H 0.97005 * 119.99796 * 354.97653 * 8 7 5 31 31 H 0.96999 * 119.99300 * 264.99907 * 13 3 2 32 32 H 1.08998 * 109.47626 * 89.99532 * 18 17 16 33 33 H 1.09005 * 109.46608 * 209.99592 * 18 17 16 34 34 H 1.08997 * 109.46866 * 329.98866 * 18 17 16 35 35 H 0.97008 * 120.00123 * 179.97438 * 21 20 19 36 36 H 0.97003 * 120.00608 * 359.97038 * 21 20 19 37 37 H 1.09000 * 109.46604 * 269.98142 * 24 23 22 38 38 H 1.09001 * 109.47006 * 29.97962 * 24 23 22 39 39 H 1.08995 * 109.47162 * 149.98212 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5897 1.9871 0.8298 5 6 3.5394 1.4451 0.1522 6 1 4.1634 1.8005 -0.6545 7 6 4.1145 0.9940 1.3212 8 7 5.3375 0.5106 1.3086 9 14 3.1564 1.0692 2.9231 10 1 3.9912 0.5270 4.0251 11 1 2.7987 2.4795 3.2202 12 1 1.9174 0.2602 2.7973 13 7 1.6762 2.0891 -1.2632 14 6 0.4614 2.6551 -1.4052 15 8 -0.3325 2.6295 -0.4846 16 6 0.0948 3.3059 -2.6777 17 6 -0.5170 2.5785 -3.7069 18 6 -0.8135 1.1110 -3.5345 19 7 -0.8345 3.1986 -4.8276 20 6 -0.5716 4.4888 -4.9904 21 7 -0.9148 5.0972 -6.1797 22 7 0.0114 5.2108 -4.0423 23 6 0.3543 4.6662 -2.8902 24 6 1.0156 5.4951 -1.8193 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.8080 0.4037 0.4671 31 1 2.3097 2.1098 -1.9975 32 1 -1.8089 0.9890 -3.1075 33 1 -0.7709 0.6154 -4.5044 34 1 -0.0749 0.6671 -2.8670 35 1 -0.7293 6.0400 -6.3135 36 1 -1.3416 4.5825 -6.8825 37 1 2.0974 5.4579 -1.9474 38 1 0.6758 6.5278 -1.8974 39 1 0.7520 5.0990 -0.8387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358063096.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:45 Heat of formation + Delta-G solvation = -21.843676 kcal Electronic energy + Delta-G solvation = -22253.725593 eV Core-core repulsion = 19002.026879 eV Total energy + Delta-G solvation = -3251.698714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34389 -40.49992 -37.08528 -36.30824 -35.95167 -34.43842 -33.25908 -32.13727 -30.50902 -29.29900 -28.57118 -24.99471 -24.11861 -22.96480 -22.42715 -21.24418 -19.97598 -19.39840 -18.34168 -18.15657 -17.32434 -16.88853 -16.46876 -15.99667 -15.55531 -15.14707 -14.87177 -14.51214 -14.46848 -14.41460 -14.15333 -13.95208 -13.90327 -13.57483 -13.45323 -13.11723 -12.82003 -12.57129 -12.43425 -12.22933 -11.75446 -11.70291 -11.50575 -11.41140 -11.19399 -10.80475 -10.37096 -10.33318 -9.80511 -9.37527 -8.77523 -6.36449 -0.13179 -0.03085 1.50751 1.52841 1.62321 1.73457 2.02067 2.43509 2.46878 2.66784 2.90421 2.97392 3.27486 3.71430 3.95639 4.02026 4.27554 4.36138 4.45916 4.52827 4.56281 4.57744 4.60503 4.75864 4.76953 4.90275 5.02170 5.15897 5.22675 5.26121 5.37311 5.61032 5.66369 5.73251 5.80156 6.06535 6.22061 6.26120 6.58118 6.81147 7.28363 7.28481 7.40284 8.59331 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.005144 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.839480 B = 5441.732401 C = 5828.733976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.255 3.745 4 H 0.025 0.975 5 C -0.624 4.624 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.917 5.917 9 Si 1.060 2.940 10 H -0.284 1.284 11 H -0.272 1.272 12 H -0.254 1.254 13 N -0.690 5.690 14 C 0.581 3.419 15 O -0.569 6.569 16 C -0.312 4.312 17 C 0.255 3.745 18 C -0.112 4.112 19 N -0.581 5.581 20 C 0.566 3.434 21 N -0.794 5.794 22 N -0.583 5.583 23 C 0.253 3.747 24 C -0.110 4.110 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.261 0.739 31 H 0.399 0.601 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.425 0.575 36 H 0.426 0.574 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.347 6.120 -13.235 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.151 3.849 4 H 0.043 0.957 5 C -0.661 4.661 6 H 0.059 0.941 7 C -0.194 4.194 8 N -0.550 5.550 9 Si 0.882 3.118 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.178 1.178 13 N -0.337 5.337 14 C 0.366 3.634 15 O -0.449 6.449 16 C -0.324 4.324 17 C 0.106 3.894 18 C -0.169 4.169 19 N -0.306 5.306 20 C 0.207 3.793 21 N -0.344 5.344 22 N -0.308 5.308 23 C 0.105 3.895 24 C -0.167 4.167 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.233 0.767 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.259 0.741 36 H 0.259 0.741 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.015 6.267 -11.860 18.690 hybrid contribution 0.868 0.139 -1.565 1.795 sum -12.147 6.406 -13.425 19.205 Atomic orbital electron populations 1.21879 0.95465 1.00603 1.01813 1.22125 0.95367 0.98178 1.01095 1.18791 0.93646 0.89697 0.82781 0.95692 1.22115 0.91378 1.48859 1.03794 0.94102 1.26611 0.96750 0.91237 1.04759 1.70966 1.14904 1.38843 1.30276 0.83822 0.75877 0.78450 0.73642 1.20917 1.19744 1.17799 1.46156 1.14716 1.55626 1.17229 1.17741 0.81833 0.77532 0.86283 1.90748 1.51167 1.60719 1.42245 1.21070 1.15187 0.97392 0.98713 1.21736 0.85089 0.97167 0.85388 1.20987 1.03819 0.87096 1.04960 1.67789 1.28084 1.09592 1.25183 1.19741 0.86228 0.85395 0.87904 1.41631 1.65788 1.14523 1.12430 1.67776 1.21361 1.39157 1.02529 1.21693 0.86879 0.89755 0.91212 1.20898 1.01339 1.00451 0.94037 0.94253 0.92479 0.92350 0.92613 0.93093 0.92952 0.76714 0.88249 0.87586 0.90447 0.74126 0.74076 0.88263 0.87746 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.54 71.98 0.61 -4.56 16 2 C -0.13 -5.40 5.37 30.59 0.16 -5.24 16 3 C 0.26 11.64 1.83 44.24 0.08 11.72 16 4 H 0.03 1.25 6.12 -2.39 -0.01 1.23 16 5 C -0.62 -32.87 8.92 25.60 0.23 -32.64 16 6 H 0.04 2.29 7.96 -2.91 -0.02 2.27 16 7 C 0.01 0.52 5.15 84.65 0.44 0.96 16 8 N -0.92 -53.91 13.70 21.45 0.29 -53.61 16 9 Si 1.06 49.02 26.56 68.60 1.82 50.84 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.25 -10.87 6.36 99.48 0.63 -10.23 16 13 N -0.69 -26.84 5.03 -449.25 -2.26 -29.10 16 14 C 0.58 21.60 3.17 86.70 0.28 21.88 16 15 O -0.57 -24.36 14.25 -4.01 -0.06 -24.42 16 16 C -0.31 -10.11 5.66 -19.91 -0.11 -10.22 16 17 C 0.25 7.41 6.87 42.99 0.30 7.70 16 18 C -0.11 -2.69 9.68 71.24 0.69 -2.00 16 19 N -0.58 -15.82 10.37 -185.21 -1.92 -17.74 16 20 C 0.57 14.41 8.65 261.57 2.26 16.68 16 21 N -0.79 -12.35 9.04 -59.86 -0.54 -12.89 16 22 N -0.58 -16.31 10.37 -185.21 -1.92 -18.23 16 23 C 0.25 7.66 6.87 43.00 0.30 7.96 16 24 C -0.11 -2.95 9.85 71.24 0.70 -2.25 16 25 H 0.04 1.54 7.91 -2.39 -0.02 1.52 16 26 H 0.06 2.04 4.07 -2.39 -0.01 2.03 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 2.26 5.78 -2.39 -0.01 2.25 16 30 H 0.26 15.38 8.73 -92.70 -0.81 14.58 16 31 H 0.40 14.56 8.51 -92.71 -0.79 13.77 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.08 2.05 5.84 -2.39 -0.01 2.04 16 35 H 0.43 4.84 8.94 -92.70 -0.83 4.02 16 36 H 0.43 4.74 8.94 -92.71 -0.83 3.91 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.07 2.16 7.18 -2.39 -0.02 2.14 16 Total: -1.00 -66.27 319.27 -0.09 -66.37 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -1.44 Total: 28.82 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.93 Total: 9.98 kcal Atomic # 7 Polarization: -125.23 SS G_CDS: -6.35 Total: -131.58 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.82 Total: 50.84 kcal Total: -66.27 -0.09 -66.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358063096.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.521 kcal (2) G-P(sol) polarization free energy of solvation -66.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds