Wall clock time and date at job start Tue Mar 31 2020 00:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 C 1.52992 * 109.46961 * 240.00158 * 2 1 3 5 5 C 1.50703 * 109.47436 * 59.99585 * 4 2 1 6 6 H 1.07997 * 119.99736 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99998 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46857 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47145 * 119.99826 * 9 7 5 12 12 H 1.48495 * 109.47134 * 239.99679 * 9 7 5 13 13 C 1.52991 * 109.47320 * 119.99929 * 2 1 3 14 14 N 1.46505 * 109.47428 * 300.00197 * 13 2 1 15 15 C 1.34779 * 120.00421 * 180.02562 * 14 13 2 16 16 O 1.21566 * 119.99375 * 359.97438 * 15 14 13 17 17 C 1.47724 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.33019 * 120.16212 * 5.84016 * 17 15 14 19 19 C 1.31728 * 120.00811 * 180.02562 * 18 17 15 20 20 C 1.38803 * 120.34251 * 0.02562 * 19 18 17 21 21 N 1.32020 * 120.32697 * 359.97438 * 20 19 18 22 22 C 1.32832 * 119.98466 * 359.71787 * 21 20 19 23 23 N 1.38271 * 120.17377 * 180.29503 * 22 21 20 24 24 H 1.08999 * 109.47421 * 299.99760 * 1 2 3 25 25 H 1.08997 * 109.47233 * 60.00236 * 1 2 3 26 26 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47093 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47210 * 299.99944 * 3 2 1 29 29 H 1.08999 * 109.46949 * 59.99951 * 3 2 1 30 30 H 1.08997 * 109.47389 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47484 * 299.99824 * 4 2 1 32 32 H 0.97006 * 120.00355 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47564 * 180.02562 * 13 2 1 34 34 H 1.09004 * 109.47466 * 60.00035 * 13 2 1 35 35 H 0.97006 * 119.99235 * 0.02562 * 14 13 2 36 36 H 1.08007 * 119.82903 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.83417 * 179.97438 * 20 19 18 38 38 H 0.97000 * 120.00534 * 203.09701 * 23 22 21 39 39 H 0.96998 * 119.99888 * 23.09294 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6263 -1.5514 -3.8526 9 14 1.2480 0.3988 -5.2572 10 1 0.4234 1.5657 -4.8529 11 1 2.4032 0.8646 -6.0657 12 1 0.4223 -0.5340 -6.0654 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8778 -0.4908 3.6696 16 8 2.5767 -1.4791 3.7810 17 6 1.3849 0.2053 4.8757 18 7 0.5264 1.2148 4.7609 19 6 0.0892 1.8337 5.8384 20 6 0.5201 1.4386 7.0974 21 7 1.3719 0.4383 7.2269 22 6 1.8164 -0.1988 6.1494 23 7 2.7040 -1.2509 6.2809 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8607 -1.8829 -4.7337 33 1 3.1300 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9937 0.7578 2.3563 36 1 -0.6075 2.6533 5.7418 37 1 0.1567 1.9520 7.9753 38 1 3.2787 -1.4963 5.5390 39 1 2.7519 -1.7436 7.1150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360421446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:15 Heat of formation + Delta-G solvation = 1.323398 kcal Electronic energy + Delta-G solvation = -21395.209438 eV Core-core repulsion = 18144.515323 eV Total energy + Delta-G solvation = -3250.694115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.39047 -39.32189 -37.19317 -35.67704 -33.87650 -33.52136 -32.07224 -30.01289 -27.19756 -26.60677 -26.48417 -25.17826 -23.76028 -22.83896 -20.75648 -18.80341 -18.44999 -17.73178 -17.32661 -16.34275 -16.25086 -15.58078 -15.17001 -15.12668 -14.56292 -14.49273 -14.08869 -13.53250 -13.49196 -13.04996 -12.74805 -12.17759 -12.06235 -11.90062 -11.82644 -11.16112 -11.01401 -10.83263 -10.77395 -10.63122 -10.40767 -10.26546 -10.23575 -9.87487 -9.41139 -9.14417 -8.91214 -8.84741 -8.36064 -8.26188 -5.99975 -4.00957 0.35319 1.02936 2.73605 3.05631 3.30538 3.38364 3.39694 3.42125 3.68926 4.00102 4.14078 4.44245 4.47276 4.89838 5.02179 5.10248 5.35851 5.49788 5.61825 5.77258 5.97805 6.20056 6.23076 6.26473 6.40342 6.50227 6.65516 6.72051 6.79914 7.06726 7.08188 7.08754 7.12741 7.31588 7.63265 7.65403 7.76140 7.83514 7.98970 8.28838 8.41402 9.04036 9.62269 11.11557 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038064 B = 0.003460 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.435420 B = 8091.148939 C = 8626.534698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.125 3.875 14 N -0.695 5.695 15 C 0.576 3.424 16 O -0.549 6.549 17 C -0.038 4.038 18 N -0.375 5.375 19 C -0.020 4.020 20 C 0.128 3.872 21 N -0.507 5.507 22 C 0.407 3.593 23 N -0.820 5.820 24 H 0.031 0.969 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.427 0.573 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 5.981 20.647 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.073 4.073 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.344 5.344 15 C 0.361 3.639 16 O -0.427 6.427 17 C -0.187 4.187 18 N -0.092 5.092 19 C -0.185 4.185 20 C -0.037 4.037 21 N -0.231 5.231 22 C 0.164 3.836 23 N -0.370 5.370 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.190 0.810 37 H 0.190 0.810 38 H 0.268 0.732 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.257 5.096 20.445 21.321 hybrid contribution -0.402 0.586 -0.796 1.067 sum -3.659 5.681 19.649 20.779 Atomic orbital electron populations 1.21775 0.95156 1.01190 1.00466 1.20911 0.95619 0.95905 0.94856 1.21774 1.00479 0.95877 1.00441 1.19095 0.96344 0.95228 0.89463 1.21229 1.31081 1.12034 0.90482 0.92150 1.25012 0.95328 0.95083 0.99096 1.69972 1.37050 1.23097 1.23322 0.86593 0.78603 0.79705 0.83435 1.19766 1.21147 1.21149 1.21754 0.99072 0.96182 0.82755 1.46029 1.51629 1.31692 1.05096 1.17513 0.80331 0.83328 0.82735 1.90548 1.39824 1.26503 1.85865 1.21555 1.02838 1.00734 0.93572 1.68120 1.04780 1.02931 1.33352 1.23441 1.03773 1.02707 0.88580 1.23806 0.90061 0.90814 0.98980 1.68216 1.14461 1.09647 1.30737 1.19081 0.87908 0.87715 0.88920 1.42790 1.41100 1.32090 1.21012 0.94988 0.91358 0.93385 0.93388 0.91344 0.95058 0.96324 0.96310 0.93110 0.91446 0.91437 0.75292 0.81020 0.80956 0.73188 0.76913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.29 8.05 37.16 0.30 -2.00 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.12 2.21 4.56 -4.04 -0.02 2.19 16 14 N -0.69 -10.76 4.95 -61.29 -0.30 -11.07 16 15 C 0.58 9.01 7.78 -12.38 -0.10 8.91 16 16 O -0.55 -9.38 13.79 5.31 0.07 -9.30 16 17 C -0.04 -0.52 6.77 -82.66 -0.56 -1.08 16 18 N -0.38 -4.58 9.72 -9.49 -0.09 -4.67 16 19 C -0.02 -0.17 11.21 -17.39 -0.19 -0.37 16 20 C 0.13 1.04 11.22 -17.26 -0.19 0.85 16 21 N -0.51 -5.59 10.52 -12.00 -0.13 -5.72 16 22 C 0.41 5.08 7.77 -154.87 -1.20 3.88 16 23 N -0.82 -9.03 8.57 31.32 0.27 -8.76 16 24 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 25 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 29 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.41 5.94 5.52 -40.82 -0.23 5.72 16 36 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.43 5.14 6.01 -40.82 -0.25 4.89 16 39 H 0.40 3.45 8.95 -40.82 -0.37 3.08 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -31.19 321.20 -6.90 -38.09 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.05 Total: 8.70 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.23 Total: -2.65 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.48 Total: -55.83 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.19 -6.90 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.410 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds