Wall clock time and date at job start Tue Mar 31 2020 00:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46777 * 2 1 4 4 C 1.52992 * 109.46961 * 240.00158 * 2 1 3 5 5 C 1.50703 * 109.47436 * 59.99585 * 4 2 1 6 6 H 1.07997 * 119.99736 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99998 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99810 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46857 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47145 * 119.99826 * 9 7 5 12 12 H 1.48495 * 109.47134 * 239.99679 * 9 7 5 13 13 C 1.52991 * 109.47320 * 119.99929 * 2 1 3 14 14 N 1.46505 * 109.47428 * 300.00197 * 13 2 1 15 15 C 1.34779 * 120.00421 * 180.02562 * 14 13 2 16 16 O 1.21566 * 119.99375 * 359.97438 * 15 14 13 17 17 C 1.47724 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.33019 * 120.16212 * 5.84016 * 17 15 14 19 19 C 1.31728 * 120.00811 * 180.02562 * 18 17 15 20 20 C 1.38803 * 120.34251 * 0.02562 * 19 18 17 21 21 N 1.32020 * 120.32697 * 359.97438 * 20 19 18 22 22 C 1.32832 * 119.98466 * 359.71787 * 21 20 19 23 23 N 1.38271 * 120.17377 * 180.29503 * 22 21 20 24 24 H 1.08999 * 109.47421 * 299.99760 * 1 2 3 25 25 H 1.08997 * 109.47233 * 60.00236 * 1 2 3 26 26 H 1.09004 * 109.46822 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47093 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47210 * 299.99944 * 3 2 1 29 29 H 1.08999 * 109.46949 * 59.99951 * 3 2 1 30 30 H 1.08997 * 109.47389 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47484 * 299.99824 * 4 2 1 32 32 H 0.97006 * 120.00355 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47564 * 180.02562 * 13 2 1 34 34 H 1.09004 * 109.47466 * 60.00035 * 13 2 1 35 35 H 0.97006 * 119.99235 * 0.02562 * 14 13 2 36 36 H 1.08007 * 119.82903 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.83417 * 179.97438 * 20 19 18 38 38 H 0.97000 * 120.00534 * 203.09701 * 23 22 21 39 39 H 0.96998 * 119.99888 * 23.09294 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6263 -1.5514 -3.8526 9 14 1.2480 0.3988 -5.2572 10 1 0.4234 1.5657 -4.8529 11 1 2.4032 0.8646 -6.0657 12 1 0.4223 -0.5340 -6.0654 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8778 -0.4908 3.6696 16 8 2.5767 -1.4791 3.7810 17 6 1.3849 0.2053 4.8757 18 7 0.5264 1.2148 4.7609 19 6 0.0892 1.8337 5.8384 20 6 0.5201 1.4386 7.0974 21 7 1.3719 0.4383 7.2269 22 6 1.8164 -0.1988 6.1494 23 7 2.7040 -1.2509 6.2809 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 2.8607 -1.8829 -4.7337 33 1 3.1300 -0.7208 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9937 0.7578 2.3563 36 1 -0.6075 2.6533 5.7418 37 1 0.1567 1.9520 7.9753 38 1 3.2787 -1.4963 5.5390 39 1 2.7519 -1.7436 7.1150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360421446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:15 Heat of formation + Delta-G solvation = -21.483799 kcal Electronic energy + Delta-G solvation = -21396.198432 eV Core-core repulsion = 18144.515323 eV Total energy + Delta-G solvation = -3251.683109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.25245 -40.52015 -38.68350 -36.57100 -35.15770 -34.69575 -33.85446 -30.88374 -29.09772 -27.97044 -27.91696 -26.27743 -24.91050 -24.33926 -21.98029 -20.16419 -19.38447 -18.59889 -18.50279 -18.32382 -17.32333 -16.75948 -16.43732 -16.22810 -15.99712 -15.63666 -15.16250 -14.94182 -14.78152 -14.41662 -14.22915 -13.94118 -13.77410 -12.89542 -12.74331 -12.69581 -12.64466 -12.60299 -12.34324 -12.22996 -11.95470 -11.62954 -11.54359 -11.40563 -10.98923 -10.85628 -10.51000 -10.19076 -10.11768 -9.10713 -8.13166 -6.20532 -0.47494 0.25817 1.42433 1.43715 1.55412 1.68234 2.01515 2.44474 2.48630 2.83161 3.14115 3.21560 3.41330 3.60927 3.94710 4.07490 4.17068 4.22383 4.26053 4.50472 4.69203 4.71592 4.76279 4.96159 5.08048 5.12155 5.32214 5.35754 5.44684 5.49768 5.52280 5.57304 5.79921 5.90767 5.96755 6.27114 6.32287 6.41355 6.59061 6.94409 6.97402 7.13241 7.47111 8.99530 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038064 B = 0.003460 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.435420 B = 8091.148939 C = 8626.534698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.072 0.928 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.257 1.257 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.139 3.861 14 N -0.690 5.690 15 C 0.573 3.427 16 O -0.573 6.573 17 C -0.075 4.075 18 N -0.392 5.392 19 C -0.011 4.011 20 C 0.146 3.854 21 N -0.519 5.519 22 C 0.395 3.605 23 N -0.819 5.819 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.057 0.943 29 H 0.063 0.937 30 H -0.011 1.011 31 H -0.012 1.012 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.416 0.584 36 H 0.213 0.787 37 H 0.222 0.778 38 H 0.421 0.579 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 8.691 22.573 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.090 0.910 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.783 3.217 10 H -0.181 1.181 11 H -0.210 1.210 12 H -0.211 1.211 13 C 0.015 3.985 14 N -0.340 5.340 15 C 0.360 3.640 16 O -0.454 6.454 17 C -0.220 4.220 18 N -0.109 5.109 19 C -0.178 4.178 20 C -0.020 4.020 21 N -0.242 5.242 22 C 0.154 3.846 23 N -0.368 5.368 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.230 0.770 37 H 0.239 0.761 38 H 0.261 0.739 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.209 7.788 22.382 24.264 hybrid contribution 0.151 -0.184 -1.205 1.229 sum -5.057 7.604 21.177 23.062 Atomic orbital electron populations 1.21694 0.93765 1.00975 1.01486 1.20714 0.96622 0.96288 0.92913 1.21693 0.99997 0.94746 1.01468 1.18960 0.94405 0.94216 0.92050 1.21625 1.30343 1.12029 0.91087 0.90999 1.25927 0.95685 0.95868 1.02651 1.70121 1.38820 1.24980 1.24015 0.85502 0.78052 0.78840 0.79291 1.18092 1.21043 1.21066 1.21354 0.98224 0.95523 0.83389 1.45796 1.52030 1.31810 1.04402 1.17910 0.79718 0.83085 0.83275 1.90529 1.40841 1.27621 1.86359 1.21107 1.05429 1.02768 0.92689 1.68071 1.04785 1.02939 1.35111 1.24224 1.03123 1.02537 0.87940 1.24695 0.87646 0.89049 1.00642 1.68346 1.15354 1.10567 1.29957 1.19185 0.88206 0.88145 0.89103 1.42750 1.40743 1.32134 1.21209 0.91753 0.92388 0.94284 0.94183 0.92395 0.91789 0.99296 0.99357 0.93180 0.92701 0.92912 0.74513 0.77016 0.76135 0.73921 0.75831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.05 71.98 0.58 -3.70 16 2 C -0.06 -2.51 0.54 -52.19 -0.03 -2.54 16 3 C -0.12 -4.25 8.05 71.98 0.58 -3.67 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.51 -27.56 7.65 25.60 0.20 -27.36 16 6 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -56.98 13.29 21.45 0.28 -56.69 16 9 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 13 C 0.14 5.05 4.56 86.38 0.39 5.45 16 14 N -0.69 -21.17 4.95 -466.09 -2.31 -23.48 16 15 C 0.57 18.04 7.78 86.75 0.68 18.72 16 16 O -0.57 -20.26 13.79 -3.92 -0.05 -20.32 16 17 C -0.07 -1.97 6.77 42.00 0.28 -1.68 16 18 N -0.39 -8.58 9.72 -183.94 -1.79 -10.37 16 19 C -0.01 -0.14 11.21 84.84 0.95 0.81 16 20 C 0.15 1.73 11.22 84.80 0.95 2.68 16 21 N -0.52 -10.06 10.52 -191.86 -2.02 -12.08 16 22 C 0.40 9.45 7.77 133.50 1.04 10.49 16 23 N -0.82 -18.01 8.57 -54.83 -0.47 -18.48 16 24 H 0.06 1.83 6.86 -2.39 -0.02 1.82 16 25 H 0.06 2.15 6.62 -2.39 -0.02 2.14 16 26 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 2.14 6.62 -2.38 -0.02 2.12 16 29 H 0.06 1.81 6.86 -2.39 -0.02 1.79 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.42 11.42 5.52 -92.70 -0.51 10.91 16 36 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.22 0.36 8.06 -2.91 -0.02 0.33 16 38 H 0.42 10.47 6.01 -92.71 -0.56 9.91 16 39 H 0.41 6.96 8.95 -92.71 -0.83 6.13 16 Total: -1.00 -70.28 321.20 1.08 -69.20 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.79 Total: 24.89 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 6.20 Total: 1.62 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -6.30 Total: -121.10 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.28 1.08 -69.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360421446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.712 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds