Wall clock time and date at job start Tue Mar 31 2020 00:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 C 1.50704 * 109.46805 * 119.99789 * 2 1 3 5 5 N 1.33463 * 125.49565 * 120.00487 * 4 2 1 6 6 C 1.30330 * 109.72567 * 180.02562 * 5 4 2 7 7 N 1.34677 * 108.04549 * 359.91764 * 6 5 4 8 8 N 1.30978 * 125.49302 * 299.99870 * 4 2 1 9 9 C 1.46294 * 125.05180 * 180.14563 * 7 6 5 10 10 C 1.53309 * 108.77065 * 17.01985 * 9 7 6 11 11 C 1.53157 * 109.53427 * 309.88068 * 10 9 7 12 12 C 1.50929 * 127.90885 * 179.91838 * 6 5 4 13 13 H 1.09003 * 109.71804 * 76.18736 * 12 6 5 14 14 N 1.46503 * 109.71385 * 315.59280 * 12 6 5 15 15 C 1.34777 * 120.00527 * 85.60446 * 14 12 6 16 16 O 1.21686 * 119.99487 * 359.97438 * 15 14 12 17 17 C 1.46373 * 120.00175 * 179.97438 * 15 14 12 18 18 H 1.08002 * 119.99728 * 6.24194 * 17 15 14 19 19 C 1.40042 * 119.99893 * 186.24280 * 17 15 14 20 20 N 1.30671 * 119.99961 * 184.67122 * 19 17 15 21 21 Si 1.86802 * 120.00099 * 4.67753 * 19 17 15 22 22 H 1.48505 * 109.47216 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.46975 * 299.99476 * 21 19 17 24 24 H 1.48499 * 109.47526 * 59.99639 * 21 19 17 25 25 H 1.08996 * 109.47463 * 300.00059 * 1 2 3 26 26 H 1.09002 * 109.46894 * 60.00483 * 1 2 3 27 27 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47463 * 239.99941 * 2 1 3 29 29 H 1.09004 * 109.47437 * 59.99892 * 3 2 1 30 30 H 1.09004 * 109.46788 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47450 * 299.99629 * 3 2 1 32 32 H 1.09000 * 109.58796 * 136.80522 * 9 7 6 33 33 H 1.09000 * 109.59087 * 257.23538 * 9 7 6 34 34 H 1.09000 * 109.46813 * 69.86579 * 10 9 7 35 35 H 1.08995 * 109.46800 * 189.85740 * 10 9 7 36 36 H 1.08998 * 109.46489 * 309.19923 * 11 10 9 37 37 H 1.08998 * 109.55289 * 189.06449 * 11 10 9 38 38 H 0.97004 * 119.99397 * 265.60011 * 14 12 6 39 39 H 0.96998 * 120.00543 * 354.90308 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.8029 -1.8001 1.2360 6 6 3.0534 -2.1555 2.4646 7 7 2.4380 -1.2827 3.2852 8 7 1.7830 -0.3579 2.4671 9 6 2.4770 -1.3328 4.7467 10 6 3.6378 -2.2364 5.1786 11 6 3.5600 -3.5663 4.4229 12 6 3.8787 -3.3258 2.9415 13 1 4.9387 -3.1000 2.8253 14 7 3.5396 -4.5195 2.1628 15 6 4.1519 -4.7523 0.9849 16 8 4.9861 -3.9706 0.5680 17 6 3.8135 -5.9452 0.2072 18 1 3.0038 -6.5854 0.5253 19 6 4.5395 -6.2565 -0.9491 20 7 4.1805 -7.2688 -1.6933 21 14 6.0214 -5.2247 -1.4276 22 1 6.6114 -5.7575 -2.6820 23 1 5.5972 -3.8172 -1.6384 24 1 7.0339 -5.2794 -0.3427 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.6286 -0.3288 5.1429 33 1 1.5382 -1.7387 5.1237 34 1 4.5841 -1.7454 4.9519 35 1 3.5731 -2.4235 6.2504 36 1 2.5556 -3.9792 4.5167 37 1 4.2827 -4.2666 4.8416 38 1 2.8743 -5.1424 2.4950 39 1 3.4578 -7.8491 -1.4070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408321714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:07 Heat of formation + Delta-G solvation = 19.446966 kcal Electronic energy + Delta-G solvation = -22248.863300 eV Core-core repulsion = 18998.955082 eV Total energy + Delta-G solvation = -3249.908218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01554 -38.22408 -36.87913 -34.98625 -33.85764 -32.76206 -31.28054 -29.79419 -28.66639 -27.07931 -26.04482 -23.84984 -23.16036 -22.22146 -19.87116 -19.69800 -19.07189 -17.90410 -16.60954 -16.11721 -15.64100 -15.14148 -14.81818 -14.79225 -14.14607 -13.98812 -13.60282 -13.51818 -13.05070 -12.87310 -12.65172 -12.19494 -12.08952 -12.05228 -11.84995 -11.59951 -11.38056 -11.26171 -11.09706 -10.91405 -10.74775 -10.32752 -10.13189 -9.42210 -9.33145 -9.14545 -8.99458 -8.89197 -8.12021 -7.83746 -6.92184 -4.85736 1.91498 2.50957 3.31878 3.65033 3.76139 4.09608 4.16422 4.23593 4.32654 4.40949 4.63458 4.65229 4.77821 4.85240 4.96438 5.07875 5.23078 5.25845 5.26978 5.50573 5.51235 5.61992 5.62361 5.68884 5.71739 5.85340 5.88578 5.95052 6.04515 6.08347 6.31256 6.37019 6.74513 6.82296 7.09334 7.49202 7.60852 7.80247 8.14686 8.61688 8.90606 9.06101 10.13944 10.40473 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.006650 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.185134 B = 4209.331344 C = 5425.179226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 C -0.139 4.139 4 C 0.220 3.780 5 N -0.498 5.498 6 C 0.272 3.728 7 N -0.388 5.388 8 N -0.325 5.325 9 C 0.131 3.869 10 C -0.133 4.133 11 C -0.132 4.132 12 C 0.232 3.768 13 H 0.111 0.889 14 N -0.739 5.739 15 C 0.561 3.439 16 O -0.599 6.599 17 C -0.595 4.595 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.836 5.836 21 Si 1.128 2.872 22 H -0.325 1.325 23 H -0.276 1.276 24 H -0.292 1.292 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.389 0.611 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 11.462 13.117 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 C -0.197 4.197 4 C -0.062 4.062 5 N -0.223 5.223 6 C -0.007 4.007 7 N -0.180 5.180 8 N -0.153 5.153 9 C 0.008 3.992 10 C -0.172 4.172 11 C -0.171 4.171 12 C 0.121 3.879 13 H 0.129 0.871 14 N -0.390 5.390 15 C 0.369 3.631 16 O -0.490 6.490 17 C -0.631 4.631 18 H 0.086 0.914 19 C -0.155 4.155 20 N -0.463 5.463 21 Si 0.960 3.040 22 H -0.257 1.257 23 H -0.203 1.203 24 H -0.220 1.220 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.222 0.778 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.676 12.583 11.683 17.560 hybrid contribution -1.795 -0.748 1.776 2.634 sum -5.471 11.835 13.460 18.739 Atomic orbital electron populations 1.21784 0.93665 1.02209 1.02049 1.19476 0.95734 0.95004 0.92054 1.21785 1.01362 0.94486 1.02054 1.24317 0.95705 0.92987 0.93207 1.70417 1.18039 1.13514 1.20298 1.25370 0.95277 0.94156 0.85859 1.50383 1.38897 1.21571 1.07191 1.77722 1.21147 1.14311 1.02115 1.21754 1.00181 1.01901 0.75342 1.21950 0.98375 0.95435 1.01398 1.22000 1.03709 0.97713 0.93641 1.19239 0.97588 0.81833 0.89204 0.87140 1.45793 1.46646 1.22979 1.23594 1.18404 0.79769 0.86169 0.78758 1.90164 1.38879 1.50509 1.69477 1.21977 1.19970 1.09605 1.11526 0.91406 1.27129 1.01217 0.96295 0.90822 1.70656 1.26614 1.13437 1.35641 0.82419 0.73030 0.75212 0.73300 1.25657 1.20277 1.21996 0.92273 0.91773 0.92551 0.88398 0.92271 0.92531 0.91779 0.89103 0.89942 0.90188 0.88467 0.90743 0.88955 0.77819 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 37.16 0.34 -1.49 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.80 9.18 37.16 0.34 -1.46 16 4 C 0.22 4.22 6.65 -156.43 -1.04 3.18 16 5 N -0.50 -11.15 11.18 -8.03 -0.09 -11.24 16 6 C 0.27 5.25 7.29 -155.78 -1.14 4.12 16 7 N -0.39 -6.33 4.04 -58.29 -0.24 -6.57 16 8 N -0.32 -5.81 12.74 32.50 0.41 -5.40 16 9 C 0.13 1.39 7.30 -3.99 -0.03 1.36 16 10 C -0.13 -1.16 5.95 -26.49 -0.16 -1.31 16 11 C -0.13 -1.49 5.46 -26.43 -0.14 -1.64 16 12 C 0.23 4.06 2.84 -68.75 -0.20 3.87 16 13 H 0.11 2.10 7.59 -51.93 -0.39 1.71 16 14 N -0.74 -15.44 5.08 -56.02 -0.28 -15.73 16 15 C 0.56 14.92 7.54 -12.99 -0.10 14.82 16 16 O -0.60 -17.35 11.74 5.20 0.06 -17.29 16 17 C -0.59 -16.98 9.96 -35.64 -0.36 -17.33 16 18 H 0.07 1.91 8.05 -52.49 -0.42 1.49 16 19 C 0.06 1.84 5.52 -17.37 -0.10 1.74 16 20 N -0.84 -24.58 13.64 55.55 0.76 -23.82 16 21 Si 1.13 30.56 25.99 -169.99 -4.42 26.14 16 22 H -0.32 -8.49 7.11 56.52 0.40 -8.09 16 23 H -0.28 -7.85 6.78 56.52 0.38 -7.46 16 24 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.39 7.23 8.57 -40.82 -0.35 6.88 16 39 H 0.28 7.79 8.72 -40.82 -0.36 7.44 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -36.22 324.37 -7.62 -43.84 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.83 Total: -0.35 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -2.88 Total: 5.53 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.56 Total: -62.76 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.06 Total: -17.29 kcal Atomic # 14 Polarization: 30.56 SS G_CDS: -4.42 Total: 26.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.22 -7.62 -43.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408321714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.286 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds