Wall clock time and date at job start Tue Mar 31 2020 00:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 C 1.50704 * 109.46805 * 119.99789 * 2 1 3 5 5 N 1.33463 * 125.49565 * 120.00487 * 4 2 1 6 6 C 1.30330 * 109.72567 * 180.02562 * 5 4 2 7 7 N 1.34677 * 108.04549 * 359.91764 * 6 5 4 8 8 N 1.30978 * 125.49302 * 299.99870 * 4 2 1 9 9 C 1.46294 * 125.05180 * 180.14563 * 7 6 5 10 10 C 1.53309 * 108.77065 * 17.01985 * 9 7 6 11 11 C 1.53157 * 109.53427 * 309.88068 * 10 9 7 12 12 C 1.50929 * 127.90885 * 179.91838 * 6 5 4 13 13 H 1.09003 * 109.71804 * 76.18736 * 12 6 5 14 14 N 1.46503 * 109.71385 * 315.59280 * 12 6 5 15 15 C 1.34777 * 120.00527 * 85.60446 * 14 12 6 16 16 O 1.21686 * 119.99487 * 359.97438 * 15 14 12 17 17 C 1.46373 * 120.00175 * 179.97438 * 15 14 12 18 18 H 1.08002 * 119.99728 * 6.24194 * 17 15 14 19 19 C 1.40042 * 119.99893 * 186.24280 * 17 15 14 20 20 N 1.30671 * 119.99961 * 184.67122 * 19 17 15 21 21 Si 1.86802 * 120.00099 * 4.67753 * 19 17 15 22 22 H 1.48505 * 109.47216 * 179.97438 * 21 19 17 23 23 H 1.48503 * 109.46975 * 299.99476 * 21 19 17 24 24 H 1.48499 * 109.47526 * 59.99639 * 21 19 17 25 25 H 1.08996 * 109.47463 * 300.00059 * 1 2 3 26 26 H 1.09002 * 109.46894 * 60.00483 * 1 2 3 27 27 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47463 * 239.99941 * 2 1 3 29 29 H 1.09004 * 109.47437 * 59.99892 * 3 2 1 30 30 H 1.09004 * 109.46788 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47450 * 299.99629 * 3 2 1 32 32 H 1.09000 * 109.58796 * 136.80522 * 9 7 6 33 33 H 1.09000 * 109.59087 * 257.23538 * 9 7 6 34 34 H 1.09000 * 109.46813 * 69.86579 * 10 9 7 35 35 H 1.08995 * 109.46800 * 189.85740 * 10 9 7 36 36 H 1.08998 * 109.46489 * 309.19923 * 11 10 9 37 37 H 1.08998 * 109.55289 * 189.06449 * 11 10 9 38 38 H 0.97004 * 119.99397 * 265.60011 * 14 12 6 39 39 H 0.96998 * 120.00543 * 354.90308 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.8029 -1.8001 1.2360 6 6 3.0534 -2.1555 2.4646 7 7 2.4380 -1.2827 3.2852 8 7 1.7830 -0.3579 2.4671 9 6 2.4770 -1.3328 4.7467 10 6 3.6378 -2.2364 5.1786 11 6 3.5600 -3.5663 4.4229 12 6 3.8787 -3.3258 2.9415 13 1 4.9387 -3.1000 2.8253 14 7 3.5396 -4.5195 2.1628 15 6 4.1519 -4.7523 0.9849 16 8 4.9861 -3.9706 0.5680 17 6 3.8135 -5.9452 0.2072 18 1 3.0038 -6.5854 0.5253 19 6 4.5395 -6.2565 -0.9491 20 7 4.1805 -7.2688 -1.6933 21 14 6.0214 -5.2247 -1.4276 22 1 6.6114 -5.7575 -2.6820 23 1 5.5972 -3.8172 -1.6384 24 1 7.0339 -5.2794 -0.3427 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 2.6286 -0.3288 5.1429 33 1 1.5382 -1.7387 5.1237 34 1 4.5841 -1.7454 4.9519 35 1 3.5731 -2.4235 6.2504 36 1 2.5556 -3.9792 4.5167 37 1 4.2827 -4.2666 4.8416 38 1 2.8743 -5.1424 2.4950 39 1 3.4578 -7.8491 -1.4070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408321714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:06 Heat of formation + Delta-G solvation = -7.234550 kcal Electronic energy + Delta-G solvation = -22250.020297 eV Core-core repulsion = 18998.955082 eV Total energy + Delta-G solvation = -3251.065215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.36926 -40.01248 -38.23845 -36.18918 -35.40321 -34.96008 -32.79276 -31.00043 -30.06333 -28.12433 -27.99190 -25.11316 -24.37537 -23.43502 -21.78164 -20.98805 -20.39032 -19.92039 -17.86880 -17.44861 -17.37260 -16.82368 -16.19607 -15.97674 -15.74784 -15.19890 -15.14419 -14.83061 -14.75118 -14.30290 -14.16626 -14.07407 -13.37807 -13.22924 -13.02940 -12.67138 -12.59388 -12.47124 -12.28973 -12.21528 -12.14549 -11.95258 -11.85784 -11.33918 -11.16489 -10.87620 -10.73252 -10.27669 -10.03975 -9.93653 -9.17040 -7.10967 0.53348 1.34196 1.46485 1.56192 1.86940 1.98926 2.25246 2.43380 2.80304 2.92911 3.31029 3.33837 3.66023 3.67234 3.81755 3.88223 4.13195 4.18892 4.26970 4.27535 4.38507 4.57208 4.71377 4.72407 4.81840 4.85417 4.86945 4.95345 4.99086 5.12346 5.20995 5.25000 5.42735 5.46804 5.50473 5.53941 5.78548 5.91530 5.97629 6.67117 7.12526 7.22980 8.06027 8.14340 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.006650 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.185134 B = 4209.331344 C = 5425.179226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.009 4.009 3 C -0.128 4.128 4 C 0.204 3.796 5 N -0.562 5.562 6 C 0.255 3.745 7 N -0.375 5.375 8 N -0.326 5.326 9 C 0.115 3.885 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.227 3.773 13 H 0.091 0.909 14 N -0.727 5.727 15 C 0.562 3.438 16 O -0.625 6.625 17 C -0.613 4.613 18 H 0.064 0.936 19 C 0.031 3.969 20 N -0.852 5.852 21 Si 1.161 2.839 22 H -0.310 1.310 23 H -0.302 1.302 24 H -0.289 1.289 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.401 0.599 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 12.575 15.743 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.030 4.030 3 C -0.186 4.186 4 C -0.078 4.078 5 N -0.288 5.288 6 C -0.024 4.024 7 N -0.168 5.168 8 N -0.155 5.155 9 C -0.005 4.005 10 C -0.160 4.160 11 C -0.160 4.160 12 C 0.118 3.882 13 H 0.108 0.892 14 N -0.378 5.378 15 C 0.368 3.632 16 O -0.517 6.517 17 C -0.650 4.650 18 H 0.082 0.918 19 C -0.183 4.183 20 N -0.480 5.480 21 Si 0.993 3.007 22 H -0.241 1.241 23 H -0.231 1.231 24 H -0.217 1.217 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.236 0.764 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.317 13.682 14.379 20.312 hybrid contribution -1.661 -1.029 1.075 2.230 sum -5.978 12.653 15.453 20.848 Atomic orbital electron populations 1.21717 0.91728 1.01505 1.03669 1.19677 0.97328 0.95963 0.90077 1.21718 1.00255 0.92954 1.03668 1.24866 0.95662 0.92689 0.94603 1.70343 1.20090 1.15581 1.22822 1.25422 0.95965 0.95094 0.85878 1.50728 1.37036 1.20017 1.08993 1.77625 1.21279 1.14743 1.01846 1.22384 1.02284 1.03949 0.71895 1.22013 0.97267 0.93098 1.03599 1.22033 1.04957 0.99989 0.88988 1.19618 0.96345 0.79786 0.92499 0.89154 1.45432 1.45773 1.24333 1.22213 1.18218 0.79642 0.85261 0.80097 1.90141 1.39951 1.51095 1.70548 1.22170 1.20067 1.10583 1.12196 0.91773 1.27726 1.02420 0.96742 0.91384 1.70658 1.27262 1.14034 1.36075 0.81948 0.72026 0.72970 0.73749 1.24063 1.23074 1.21654 0.91797 0.88900 0.94363 0.90448 0.91812 0.94141 0.88895 0.87092 0.87698 0.90570 0.83552 0.89545 0.86831 0.76402 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.18 71.98 0.66 -2.61 16 2 C -0.01 -0.29 3.39 -11.54 -0.04 -0.33 16 3 C -0.13 -3.21 9.18 71.98 0.66 -2.55 16 4 C 0.20 7.90 6.65 138.49 0.92 8.83 16 5 N -0.56 -25.80 11.18 -179.31 -2.01 -27.80 16 6 C 0.26 9.77 7.29 138.37 1.01 10.78 16 7 N -0.38 -11.63 4.04 -338.34 -1.37 -13.00 16 8 N -0.33 -11.39 12.74 -51.08 -0.65 -12.04 16 9 C 0.11 2.00 7.30 86.52 0.63 2.63 16 10 C -0.12 -1.56 5.95 30.75 0.18 -1.38 16 11 C -0.12 -2.32 5.46 30.79 0.17 -2.15 16 12 C 0.23 7.76 2.84 44.46 0.13 7.88 16 13 H 0.09 3.45 7.59 -2.39 -0.02 3.43 16 14 N -0.73 -30.20 5.08 -449.35 -2.28 -32.48 16 15 C 0.56 30.32 7.54 86.36 0.65 30.97 16 16 O -0.62 -36.94 11.74 -4.30 -0.05 -36.99 16 17 C -0.61 -35.59 9.96 24.83 0.25 -35.34 16 18 H 0.06 3.67 8.05 -2.91 -0.02 3.65 16 19 C 0.03 1.86 5.52 85.30 0.47 2.33 16 20 N -0.85 -50.58 13.64 21.83 0.30 -50.28 16 21 Si 1.16 63.26 25.99 68.60 1.78 65.05 16 22 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 23 H -0.30 -17.66 6.78 99.48 0.67 -16.99 16 24 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.40 14.57 8.57 -92.71 -0.79 13.77 16 39 H 0.28 15.84 8.72 -92.71 -0.81 15.03 16 Total: -1.00 -81.82 324.37 1.61 -80.21 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.19 Total: 8.29 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.69 Total: 19.04 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -6.01 Total: -135.60 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.05 Total: -36.99 kcal Atomic # 14 Polarization: 63.26 SS G_CDS: 1.78 Total: 65.05 kcal Total: -81.82 1.61 -80.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408321714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.977 kcal (2) G-P(sol) polarization free energy of solvation -81.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds