Wall clock time and date at job start Tue Mar 31 2020 00:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47082 * 2 1 4 4 C 1.50703 * 109.46974 * 119.99672 * 2 1 3 5 5 N 1.33474 * 125.49381 * 120.00588 * 4 2 1 6 6 C 1.30330 * 109.72360 * 179.97438 * 5 4 2 7 7 N 1.34675 * 108.04295 * 0.07472 * 6 5 4 8 8 N 1.30976 * 125.49786 * 299.97673 * 4 2 1 9 9 C 1.46309 * 125.04426 * 179.84959 * 7 6 5 10 10 C 1.53295 * 108.77208 * 342.97296 * 9 7 6 11 11 C 1.53122 * 109.49935 * 50.12817 * 10 9 7 12 12 C 1.50931 * 127.90530 * 180.02562 * 6 5 4 13 13 H 1.08999 * 109.71423 * 283.82246 * 12 6 5 14 14 N 1.46499 * 109.71967 * 44.42291 * 12 6 5 15 15 C 1.34777 * 120.00195 * 275.00665 * 14 12 6 16 16 O 1.21683 * 120.00011 * 359.97438 * 15 14 12 17 17 C 1.46373 * 120.00143 * 179.97438 * 15 14 12 18 18 H 1.08001 * 119.99611 * 0.02562 * 17 15 14 19 19 C 1.40045 * 120.00438 * 179.97438 * 17 15 14 20 20 N 1.30674 * 119.99799 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00532 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47339 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00695 * 21 19 17 24 24 H 1.48504 * 109.46636 * 60.00254 * 21 19 17 25 25 H 1.09000 * 109.47220 * 59.99963 * 1 2 3 26 26 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47112 * 300.00199 * 1 2 3 28 28 H 1.08996 * 109.47515 * 239.99826 * 2 1 3 29 29 H 1.09000 * 109.47235 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47123 * 300.00096 * 3 2 1 31 31 H 1.08998 * 109.47430 * 59.99971 * 3 2 1 32 32 H 1.08996 * 109.58532 * 102.76673 * 9 7 6 33 33 H 1.09000 * 109.58093 * 223.04875 * 9 7 6 34 34 H 1.09001 * 109.47091 * 170.14529 * 10 9 7 35 35 H 1.09004 * 109.47110 * 290.14504 * 10 9 7 36 36 H 1.09008 * 109.51381 * 170.89380 * 11 10 9 37 37 H 1.08996 * 109.48755 * 50.77703 * 11 10 9 38 38 H 0.97000 * 120.00069 * 94.99937 * 14 12 6 39 39 H 0.96996 * 120.00331 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.8030 -1.8001 1.2360 6 6 3.0544 -2.1549 2.4646 7 7 2.4367 -1.2837 3.2851 8 7 1.7835 -0.3577 2.4671 9 6 2.4709 -1.3374 4.7468 10 6 2.9355 -2.7330 5.1784 11 6 4.2151 -3.1021 4.4227 12 6 3.8819 -3.3236 2.9414 13 1 3.3149 -4.2473 2.8252 14 7 5.1203 -3.4028 2.1628 15 6 5.1322 -4.0471 0.9791 16 8 4.1143 -4.5635 0.5572 17 6 6.3694 -4.1257 0.2009 18 1 7.2729 -3.6678 0.5755 19 6 6.3819 -4.7957 -1.0289 20 7 5.2888 -5.3502 -1.4819 21 14 7.9607 -4.8954 -2.0223 22 1 7.7100 -5.6515 -3.2755 23 1 8.4230 -3.5243 -2.3560 24 1 9.0040 -5.5893 -1.2252 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1664 -0.5877 5.1238 33 1 1.4741 -1.1431 5.1428 34 1 3.1334 -2.7346 6.2503 35 1 2.1571 -3.4615 4.9515 36 1 4.6346 -4.0167 4.8420 37 1 4.9390 -2.2927 4.5163 38 1 5.9318 -2.9914 2.4991 39 1 5.2973 -5.8140 -2.3338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408321718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:10 Heat of formation + Delta-G solvation = 35.491721 kcal Electronic energy + Delta-G solvation = -22160.183933 eV Core-core repulsion = 18910.971468 eV Total energy + Delta-G solvation = -3249.212465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.85005 -37.83630 -36.49452 -34.84853 -33.55520 -32.27483 -30.98269 -29.64645 -28.45328 -26.99464 -26.06026 -23.76548 -23.02579 -22.08558 -19.83056 -19.49400 -18.90186 -17.12433 -16.43538 -15.92638 -15.27184 -15.15711 -14.66080 -14.46940 -14.17758 -14.00150 -13.61961 -13.41155 -12.95740 -12.44244 -12.23282 -12.06443 -11.82722 -11.74278 -11.57611 -11.26826 -11.14675 -11.06322 -10.99778 -10.92252 -10.70951 -10.60497 -10.36592 -10.16916 -9.23602 -9.16680 -8.84017 -8.77832 -7.67582 -7.48796 -6.09864 -4.55401 2.07224 2.65761 3.20760 3.25468 3.27083 3.49553 4.14689 4.33352 4.38219 4.51223 4.63770 4.80551 4.94279 5.01514 5.08491 5.21693 5.35036 5.36826 5.40932 5.62124 5.64682 5.76330 5.76941 5.84567 5.91552 5.96599 6.05803 6.06507 6.13282 6.30145 6.40091 6.48130 6.89784 6.97363 7.26358 7.50443 7.88641 8.06631 8.36197 8.79139 9.10476 9.55113 10.69005 10.88151 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.006050 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.340947 B = 4626.830033 C = 5937.686178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.001 4.001 3 C -0.138 4.138 4 C 0.219 3.781 5 N -0.493 5.493 6 C 0.275 3.725 7 N -0.390 5.390 8 N -0.329 5.329 9 C 0.132 3.868 10 C -0.133 4.133 11 C -0.131 4.131 12 C 0.234 3.766 13 H 0.106 0.894 14 N -0.749 5.749 15 C 0.562 3.438 16 O -0.559 6.559 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.089 3.911 20 N -0.765 5.765 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.382 0.618 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 8.636 11.064 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.218 5.218 6 C -0.003 4.003 7 N -0.183 5.183 8 N -0.157 5.157 9 C 0.009 3.991 10 C -0.172 4.172 11 C -0.170 4.170 12 C 0.123 3.877 13 H 0.124 0.876 14 N -0.404 5.404 15 C 0.365 3.635 16 O -0.439 6.439 17 C -0.580 4.580 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.394 5.394 21 Si 0.730 3.270 22 H -0.206 1.206 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.214 0.786 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.619 8.566 10.561 14.713 hybrid contribution 1.254 0.162 -0.080 1.267 sum -4.365 8.729 10.481 14.321 Atomic orbital electron populations 1.21782 0.93783 1.02176 1.01927 1.19451 0.95631 0.94919 0.92188 1.21781 1.01371 0.94578 1.01928 1.24300 0.95888 0.93067 0.93113 1.70470 1.17759 1.13273 1.20286 1.25523 0.94693 0.94371 0.85754 1.50402 1.39195 1.21606 1.07103 1.77689 1.21532 1.14351 1.02164 1.21719 1.03071 0.98778 0.75522 1.21941 0.98678 0.95292 1.01264 1.21995 0.97495 1.03481 0.94024 1.19136 0.87583 0.91997 0.88942 0.87596 1.46247 1.08017 1.62208 1.23932 1.18157 0.89887 0.77228 0.78199 1.90619 1.35120 1.49421 1.68758 1.20761 0.95183 1.37604 1.04464 0.91736 1.25650 0.96623 0.93552 0.97204 1.70011 1.26907 1.25153 1.17293 0.86479 0.82533 0.78867 0.79099 1.20610 1.19401 1.19389 0.91894 0.92532 0.92318 0.88440 0.92549 0.91894 0.92324 0.90100 0.89298 0.88665 0.90282 0.89165 0.90866 0.78633 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.17 37.16 0.34 -1.57 16 2 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 3 C -0.14 -1.91 9.18 37.16 0.34 -1.57 16 4 C 0.22 4.41 6.65 -156.43 -1.04 3.37 16 5 N -0.49 -11.69 11.17 -8.02 -0.09 -11.78 16 6 C 0.28 5.65 7.28 -155.78 -1.13 4.52 16 7 N -0.39 -6.78 4.04 -58.29 -0.24 -7.01 16 8 N -0.33 -6.20 12.74 32.51 0.41 -5.79 16 9 C 0.13 1.52 7.30 -3.99 -0.03 1.49 16 10 C -0.13 -1.29 5.95 -26.52 -0.16 -1.45 16 11 C -0.13 -1.62 5.45 -26.44 -0.14 -1.76 16 12 C 0.23 4.42 2.84 -68.74 -0.20 4.22 16 13 H 0.11 2.22 7.61 -51.93 -0.40 1.83 16 14 N -0.75 -16.53 5.09 -56.01 -0.28 -16.81 16 15 C 0.56 15.89 7.69 -12.99 -0.10 15.79 16 16 O -0.56 -18.01 14.70 5.20 0.08 -17.93 16 17 C -0.54 -15.44 9.54 -35.63 -0.34 -15.78 16 18 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 19 C 0.09 2.53 5.50 -17.37 -0.10 2.43 16 20 N -0.76 -23.21 11.83 55.55 0.66 -22.56 16 21 Si 0.91 20.44 29.56 -169.99 -5.02 15.42 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 37 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.38 7.38 8.56 -40.82 -0.35 7.03 16 39 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -37.75 328.47 -8.19 -45.93 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.78 Total: 6.20 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -2.87 Total: 9.38 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: 0.46 Total: -63.95 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.08 Total: -17.93 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.75 -8.19 -45.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408321718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.426 kcal (2) G-P(sol) polarization free energy of solvation -37.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds