Wall clock time and date at job start Tue Mar 31 2020 00:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47082 * 2 1 4 4 C 1.50703 * 109.46974 * 119.99672 * 2 1 3 5 5 N 1.33474 * 125.49381 * 120.00588 * 4 2 1 6 6 C 1.30330 * 109.72360 * 179.97438 * 5 4 2 7 7 N 1.34675 * 108.04295 * 0.07472 * 6 5 4 8 8 N 1.30976 * 125.49786 * 299.97673 * 4 2 1 9 9 C 1.46309 * 125.04426 * 179.84959 * 7 6 5 10 10 C 1.53295 * 108.77208 * 342.97296 * 9 7 6 11 11 C 1.53122 * 109.49935 * 50.12817 * 10 9 7 12 12 C 1.50931 * 127.90530 * 180.02562 * 6 5 4 13 13 H 1.08999 * 109.71423 * 283.82246 * 12 6 5 14 14 N 1.46499 * 109.71967 * 44.42291 * 12 6 5 15 15 C 1.34777 * 120.00195 * 275.00665 * 14 12 6 16 16 O 1.21683 * 120.00011 * 359.97438 * 15 14 12 17 17 C 1.46373 * 120.00143 * 179.97438 * 15 14 12 18 18 H 1.08001 * 119.99611 * 0.02562 * 17 15 14 19 19 C 1.40045 * 120.00438 * 179.97438 * 17 15 14 20 20 N 1.30674 * 119.99799 * 0.02562 * 19 17 15 21 21 Si 1.86798 * 120.00532 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47339 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00695 * 21 19 17 24 24 H 1.48504 * 109.46636 * 60.00254 * 21 19 17 25 25 H 1.09000 * 109.47220 * 59.99963 * 1 2 3 26 26 H 1.08999 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47112 * 300.00199 * 1 2 3 28 28 H 1.08996 * 109.47515 * 239.99826 * 2 1 3 29 29 H 1.09000 * 109.47235 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47123 * 300.00096 * 3 2 1 31 31 H 1.08998 * 109.47430 * 59.99971 * 3 2 1 32 32 H 1.08996 * 109.58532 * 102.76673 * 9 7 6 33 33 H 1.09000 * 109.58093 * 223.04875 * 9 7 6 34 34 H 1.09001 * 109.47091 * 170.14529 * 10 9 7 35 35 H 1.09004 * 109.47110 * 290.14504 * 10 9 7 36 36 H 1.09008 * 109.51381 * 170.89380 * 11 10 9 37 37 H 1.08996 * 109.48755 * 50.77703 * 11 10 9 38 38 H 0.97000 * 120.00069 * 94.99937 * 14 12 6 39 39 H 0.96996 * 120.00331 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.8030 -1.8001 1.2360 6 6 3.0544 -2.1549 2.4646 7 7 2.4367 -1.2837 3.2851 8 7 1.7835 -0.3577 2.4671 9 6 2.4709 -1.3374 4.7468 10 6 2.9355 -2.7330 5.1784 11 6 4.2151 -3.1021 4.4227 12 6 3.8819 -3.3236 2.9414 13 1 3.3149 -4.2473 2.8252 14 7 5.1203 -3.4028 2.1628 15 6 5.1322 -4.0471 0.9791 16 8 4.1143 -4.5635 0.5572 17 6 6.3694 -4.1257 0.2009 18 1 7.2729 -3.6678 0.5755 19 6 6.3819 -4.7957 -1.0289 20 7 5.2888 -5.3502 -1.4819 21 14 7.9607 -4.8954 -2.0223 22 1 7.7100 -5.6515 -3.2755 23 1 8.4230 -3.5243 -2.3560 24 1 9.0040 -5.5893 -1.2252 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1664 -0.5877 5.1238 33 1 1.4741 -1.1431 5.1428 34 1 3.1334 -2.7346 6.2503 35 1 2.1571 -3.4615 4.9515 36 1 4.6346 -4.0167 4.8420 37 1 4.9390 -2.2927 4.5163 38 1 5.9318 -2.9914 2.4991 39 1 5.2973 -5.8140 -2.3338 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408321718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:09 Heat of formation + Delta-G solvation = 7.288777 kcal Electronic energy + Delta-G solvation = -22161.406905 eV Core-core repulsion = 18910.971468 eV Total energy + Delta-G solvation = -3250.435436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.30534 -39.56332 -38.03542 -36.11442 -35.22649 -34.39948 -32.62180 -30.95139 -29.95695 -28.11420 -28.03097 -25.10776 -24.32970 -23.39435 -21.70891 -20.91351 -20.27392 -19.07476 -17.77085 -17.39904 -17.24022 -16.61617 -16.01906 -15.90532 -15.85497 -15.18045 -14.98925 -14.60755 -14.33562 -14.08788 -13.93663 -13.31964 -13.24910 -13.17636 -12.93405 -12.71581 -12.63002 -12.48431 -12.43311 -12.19215 -12.12199 -12.03826 -11.93226 -11.78894 -10.87666 -10.79291 -10.67538 -10.21711 -9.75788 -9.59358 -8.22322 -6.78942 0.58663 1.39757 1.40758 1.45660 1.55249 1.94684 2.27516 2.54739 2.99292 3.03635 3.36834 3.56091 3.71399 3.85848 3.90335 3.91907 4.14727 4.24045 4.30766 4.31904 4.41007 4.61314 4.73205 4.76409 4.84515 4.86052 4.89586 4.99003 4.99878 5.16795 5.22969 5.26194 5.35878 5.48955 5.54665 5.87780 5.93188 6.20798 6.28310 6.92834 7.29704 7.57612 8.58482 8.76380 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.006050 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.340947 B = 4626.830033 C = 5937.686178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.008 4.008 3 C -0.127 4.127 4 C 0.202 3.798 5 N -0.560 5.560 6 C 0.258 3.742 7 N -0.377 5.377 8 N -0.328 5.328 9 C 0.116 3.884 10 C -0.122 4.122 11 C -0.119 4.119 12 C 0.230 3.770 13 H 0.074 0.926 14 N -0.739 5.739 15 C 0.550 3.450 16 O -0.610 6.610 17 C -0.574 4.574 18 H 0.083 0.917 19 C 0.030 3.970 20 N -0.820 5.820 21 Si 0.994 3.006 22 H -0.275 1.275 23 H -0.260 1.260 24 H -0.250 1.250 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.148 0.852 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.396 0.604 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 10.155 13.078 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.029 4.029 3 C -0.185 4.185 4 C -0.080 4.080 5 N -0.287 5.287 6 C -0.021 4.021 7 N -0.170 5.170 8 N -0.157 5.157 9 C -0.004 4.004 10 C -0.160 4.160 11 C -0.157 4.157 12 C 0.120 3.880 13 H 0.092 0.908 14 N -0.393 5.393 15 C 0.354 3.646 16 O -0.495 6.495 17 C -0.611 4.611 18 H 0.102 0.898 19 C -0.185 4.185 20 N -0.450 5.450 21 Si 0.813 3.187 22 H -0.200 1.200 23 H -0.184 1.184 24 H -0.174 1.174 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.165 0.835 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.519 10.124 12.674 16.839 hybrid contribution 0.845 -0.280 -0.593 1.069 sum -3.674 9.844 12.081 16.011 Atomic orbital electron populations 1.21717 0.91670 1.01479 1.03708 1.19654 0.97376 0.95930 0.89985 1.21709 1.00182 0.92906 1.03678 1.24882 0.95809 0.92720 0.94609 1.70398 1.19939 1.15416 1.22935 1.25534 0.95512 0.95250 0.85809 1.50752 1.37341 1.19944 1.08959 1.77581 1.21526 1.14760 1.01824 1.22365 1.05259 1.00834 0.71965 1.22006 0.96733 0.93680 1.03614 1.22005 0.99458 1.05181 0.89097 1.19439 0.85580 0.90400 0.92583 0.90824 1.45785 1.09937 1.60886 1.22682 1.18437 0.89376 0.77154 0.79680 1.90573 1.36683 1.51631 1.70573 1.21343 0.96056 1.38228 1.05438 0.89846 1.26899 1.00889 0.92338 0.98340 1.70199 1.30204 1.26453 1.18122 0.85138 0.77058 0.79355 0.77119 1.20012 1.18427 1.17423 0.88816 0.94441 0.91701 0.90821 0.94270 0.88857 0.91731 0.87543 0.87200 0.83463 0.91031 0.87164 0.89344 0.76976 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.17 71.98 0.66 -2.84 16 2 C -0.01 -0.28 3.39 -11.54 -0.04 -0.32 16 3 C -0.13 -3.43 9.18 71.98 0.66 -2.77 16 4 C 0.20 8.42 6.65 138.48 0.92 9.34 16 5 N -0.56 -27.93 11.17 -179.30 -2.00 -29.93 16 6 C 0.26 10.84 7.28 138.37 1.01 11.85 16 7 N -0.38 -12.79 4.04 -338.33 -1.37 -14.15 16 8 N -0.33 -12.30 12.74 -51.07 -0.65 -12.95 16 9 C 0.12 2.29 7.30 86.51 0.63 2.92 16 10 C -0.12 -1.91 5.95 30.73 0.18 -1.73 16 11 C -0.12 -2.64 5.45 30.78 0.17 -2.47 16 12 C 0.23 8.85 2.84 44.47 0.13 8.97 16 13 H 0.07 3.28 7.61 -2.39 -0.02 3.27 16 14 N -0.74 -33.43 5.09 -449.35 -2.29 -35.71 16 15 C 0.55 32.49 7.69 86.36 0.66 33.16 16 16 O -0.61 -41.75 14.70 -4.29 -0.06 -41.81 16 17 C -0.57 -33.40 9.54 24.83 0.24 -33.17 16 18 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 19 C 0.03 1.74 5.50 85.30 0.47 2.21 16 20 N -0.82 -51.89 11.83 21.83 0.26 -51.63 16 21 Si 0.99 42.33 29.56 68.60 2.03 44.36 16 22 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 28 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.28 8.12 -2.38 -0.02 1.27 16 36 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 38 H 0.40 15.31 8.56 -92.71 -0.79 14.52 16 39 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 Total: -1.00 -89.67 328.47 1.87 -87.80 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.26 Total: 28.88 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 5.69 Total: 25.15 kcal Atomic # 7 Polarization: -138.33 SS G_CDS: -6.05 Total: -144.38 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.06 Total: -41.81 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -89.67 1.87 -87.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408321718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.091 kcal (2) G-P(sol) polarization free energy of solvation -89.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds