Wall clock time and date at job start Tue Mar 31 2020 00:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46717 * 2 1 4 4 N 1.31788 * 119.03508 * 89.99977 * 3 2 1 5 5 C 1.32268 * 120.88941 * 179.97438 * 4 3 2 6 6 C 1.39236 * 119.01426 * 0.25649 * 5 4 3 7 7 N 1.39983 * 120.86922 * 179.75009 * 6 5 4 8 8 C 1.34783 * 119.99676 * 325.08359 * 7 6 5 9 9 O 1.21284 * 120.00092 * 4.67735 * 8 7 6 10 10 C 1.50695 * 119.99773 * 184.67452 * 8 7 6 11 11 H 1.09004 * 109.47145 * 40.00034 * 10 8 7 12 12 N 1.46898 * 109.47322 * 160.00248 * 10 8 7 13 13 C 1.53004 * 109.47443 * 280.00359 * 10 8 7 14 14 C 1.52999 * 109.47634 * 175.00215 * 13 10 8 15 15 C 1.50695 * 109.47141 * 180.02562 * 14 13 10 16 16 H 1.07994 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99635 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99779 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47147 * 119.99843 * 19 17 15 22 22 H 1.48504 * 109.47388 * 239.99714 * 19 17 15 23 23 C 1.39229 * 118.26057 * 359.52599 * 6 5 4 24 24 N 1.31791 * 119.03392 * 270.01906 * 3 2 1 25 25 H 1.08997 * 109.47105 * 300.00093 * 1 2 3 26 26 H 1.09001 * 109.47256 * 60.00177 * 1 2 3 27 27 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47105 * 239.99907 * 2 1 3 29 29 H 1.09001 * 109.47256 * 119.99823 * 2 1 3 30 30 H 1.08001 * 120.49471 * 179.97438 * 5 4 3 31 31 H 0.96994 * 120.00202 * 145.08767 * 7 6 5 32 32 H 1.00908 * 110.99909 * 59.99788 * 12 10 8 33 33 H 1.00893 * 111.00515 * 183.95090 * 12 10 8 34 34 H 1.08998 * 109.46776 * 295.00468 * 13 10 8 35 35 H 1.09003 * 109.46916 * 54.99734 * 13 10 8 36 36 H 1.09006 * 109.46693 * 300.00271 * 14 13 10 37 37 H 1.08995 * 109.47039 * 59.99623 * 14 13 10 38 38 H 0.96997 * 120.00232 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.49370 * 180.19956 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2454 2.0240 1.1523 5 6 2.6865 3.2702 1.1951 6 6 2.9199 3.9454 -0.0001 7 7 3.3818 5.2668 -0.0001 8 6 2.9753 6.1228 0.9585 9 8 2.2776 5.7274 1.8684 10 6 3.3877 7.5710 0.8996 11 1 3.3454 7.9191 -0.1325 12 7 2.4755 8.3739 1.7249 13 6 4.8159 7.7166 1.4287 14 6 5.2796 9.1641 1.2538 15 6 6.6865 9.3072 1.7744 16 1 7.1985 8.4516 2.1891 17 6 7.3196 10.5310 1.7223 18 7 6.6959 11.5731 1.2179 19 14 9.0633 10.7087 2.3684 20 1 9.5374 9.3979 2.8808 21 1 9.9541 11.1630 1.2705 22 1 9.0846 11.7065 3.4681 23 6 2.6865 3.2702 -1.1951 24 7 2.2451 2.0241 -1.1523 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8586 3.7584 2.1429 31 1 3.9944 5.5665 -0.6898 32 1 2.4965 8.0703 2.6870 33 1 2.6913 9.3567 1.6511 34 1 4.8402 7.4525 2.4860 35 1 5.4786 7.0530 0.8732 36 1 5.2552 9.4281 0.1964 37 1 4.6169 9.8276 1.8093 38 1 7.1414 12.4339 1.1809 39 1 2.8587 3.7584 -2.1430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424186243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:24 Heat of formation + Delta-G solvation = -5.970316 kcal Electronic energy + Delta-G solvation = -20761.346845 eV Core-core repulsion = 17510.336451 eV Total energy + Delta-G solvation = -3251.010394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50798 -39.85331 -36.08443 -35.42443 -33.85081 -33.68787 -32.95191 -30.05102 -29.84129 -26.80347 -25.10310 -24.89438 -23.77228 -22.05521 -21.00389 -20.14098 -18.30762 -17.63491 -17.13513 -16.84908 -16.33116 -15.35280 -14.93038 -14.66511 -14.49901 -14.38636 -14.30006 -13.98812 -13.67190 -13.39529 -13.15387 -12.63835 -12.28649 -12.12350 -11.88840 -11.44906 -11.33974 -11.21574 -11.04751 -10.99715 -10.96608 -10.74110 -10.12839 -10.12045 -9.55894 -9.34579 -9.29126 -8.58512 -8.52438 -8.36091 -6.16396 -4.19946 0.65886 0.92459 2.53044 2.77344 3.21228 3.29759 3.33145 3.58200 3.78856 4.01459 4.30565 4.33472 4.60639 4.79134 4.93630 4.97888 5.00908 5.06462 5.20055 5.35215 5.37105 5.54472 5.60280 5.61055 5.83003 5.84951 5.99207 6.11184 6.34324 6.38138 6.72723 6.82498 7.06463 7.36426 7.41694 7.50838 7.74071 7.80326 7.93786 8.01883 8.21714 8.86155 9.45722 10.94457 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.002982 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.884626 B = 9388.683899 C = 9707.135749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C 0.291 3.709 4 N -0.498 5.498 5 C 0.150 3.850 6 C 0.048 3.952 7 N -0.667 5.667 8 C 0.527 3.473 9 O -0.516 6.516 10 C 0.079 3.921 11 H 0.103 0.897 12 N -0.830 5.830 13 C -0.139 4.139 14 C 0.024 3.976 15 C -0.525 4.525 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.124 3.876 24 N -0.499 5.499 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.182 0.818 31 H 0.418 0.582 32 H 0.347 0.653 33 H 0.358 0.642 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 -17.166 -5.117 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C 0.023 3.977 4 N -0.211 5.211 5 C -0.019 4.019 6 C -0.052 4.052 7 N -0.314 5.314 8 C 0.316 3.684 9 O -0.389 6.389 10 C -0.037 4.037 11 H 0.121 0.879 12 N -0.363 5.363 13 C -0.179 4.179 14 C -0.013 4.013 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.045 4.045 24 N -0.212 5.212 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.198 0.802 31 H 0.255 0.745 32 H 0.160 0.840 33 H 0.174 0.826 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.025 -18.389 -4.940 21.519 hybrid contribution 2.575 1.738 0.410 3.133 sum -7.450 -16.651 -4.530 18.796 Atomic orbital electron populations 1.21698 0.93725 1.02337 1.02482 1.20292 0.96667 0.88059 1.04026 1.23169 0.93432 0.97565 0.83548 1.68303 1.12808 1.09828 1.30184 1.23595 0.91222 0.88467 0.98633 1.19636 1.01852 0.87002 0.96690 1.43511 1.48122 1.07740 1.32044 1.21319 0.78014 0.88550 0.80533 1.90645 1.36370 1.78493 1.33391 1.21479 0.93428 0.88108 1.00655 0.87938 1.58737 1.54374 1.08227 1.14978 1.22437 0.92187 1.02716 1.00569 1.19108 0.96365 0.88335 0.97473 1.21189 0.99152 0.95189 1.40829 0.92625 1.25013 0.98156 0.95932 0.95197 1.69947 1.37397 1.00504 1.45240 0.86523 0.84526 0.78194 0.78701 1.19745 1.20900 1.20898 1.23108 0.93506 0.90673 0.97258 1.68182 1.13073 1.09502 1.30470 0.92276 0.92378 0.91534 0.89341 0.89283 0.80155 0.74515 0.83951 0.82572 0.92376 0.92387 0.96213 0.96294 0.92848 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.89 37.16 0.37 -0.80 16 2 C -0.05 -0.46 6.37 -27.88 -0.18 -0.64 16 3 C 0.29 3.59 6.89 -157.20 -1.08 2.51 16 4 N -0.50 -6.89 10.32 -10.58 -0.11 -7.00 16 5 C 0.15 2.09 9.98 -16.99 -0.17 1.92 16 6 C 0.05 0.59 6.34 -83.40 -0.53 0.07 16 7 N -0.67 -7.69 5.36 -9.68 -0.05 -7.75 16 8 C 0.53 7.70 6.94 -10.99 -0.08 7.62 16 9 O -0.52 -8.91 13.75 5.55 0.08 -8.84 16 10 C 0.08 1.18 3.21 -68.87 -0.22 0.96 16 11 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 12 N -0.83 -13.00 8.94 -5.65 -0.05 -13.05 16 13 C -0.14 -2.47 4.78 -26.73 -0.13 -2.60 16 14 C 0.02 0.55 4.74 -27.89 -0.13 0.42 16 15 C -0.53 -13.84 9.11 -34.44 -0.31 -14.15 16 16 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 19 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.12 1.35 11.26 -16.99 -0.19 1.16 16 24 N -0.50 -6.07 10.32 -10.58 -0.11 -6.18 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.18 2.67 6.33 -52.49 -0.33 2.34 16 31 H 0.42 3.63 8.83 -40.82 -0.36 3.27 16 32 H 0.35 5.49 8.58 -39.29 -0.34 5.15 16 33 H 0.36 5.66 7.55 -39.30 -0.30 5.36 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -31.24 333.37 -7.71 -38.94 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.45 Total: 9.69 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.75 Total: -2.04 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.42 Total: -58.51 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.24 -7.71 -38.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424186243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.973 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds