Wall clock time and date at job start Tue Mar 31 2020 00:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.46717 * 2 1 4 4 N 1.31788 * 119.03508 * 89.99977 * 3 2 1 5 5 C 1.32268 * 120.88941 * 179.97438 * 4 3 2 6 6 C 1.39236 * 119.01426 * 0.25649 * 5 4 3 7 7 N 1.39983 * 120.86922 * 179.75009 * 6 5 4 8 8 C 1.34783 * 119.99676 * 325.08359 * 7 6 5 9 9 O 1.21284 * 120.00092 * 4.67735 * 8 7 6 10 10 C 1.50695 * 119.99773 * 184.67452 * 8 7 6 11 11 H 1.09004 * 109.47145 * 40.00034 * 10 8 7 12 12 N 1.46898 * 109.47322 * 160.00248 * 10 8 7 13 13 C 1.53004 * 109.47443 * 280.00359 * 10 8 7 14 14 C 1.52999 * 109.47634 * 175.00215 * 13 10 8 15 15 C 1.50695 * 109.47141 * 180.02562 * 14 13 10 16 16 H 1.07994 * 120.00073 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99635 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99779 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47305 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47147 * 119.99843 * 19 17 15 22 22 H 1.48504 * 109.47388 * 239.99714 * 19 17 15 23 23 C 1.39229 * 118.26057 * 359.52599 * 6 5 4 24 24 N 1.31791 * 119.03392 * 270.01906 * 3 2 1 25 25 H 1.08997 * 109.47105 * 300.00093 * 1 2 3 26 26 H 1.09001 * 109.47256 * 60.00177 * 1 2 3 27 27 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47105 * 239.99907 * 2 1 3 29 29 H 1.09001 * 109.47256 * 119.99823 * 2 1 3 30 30 H 1.08001 * 120.49471 * 179.97438 * 5 4 3 31 31 H 0.96994 * 120.00202 * 145.08767 * 7 6 5 32 32 H 1.00908 * 110.99909 * 59.99788 * 12 10 8 33 33 H 1.00893 * 111.00515 * 183.95090 * 12 10 8 34 34 H 1.08998 * 109.46776 * 295.00468 * 13 10 8 35 35 H 1.09003 * 109.46916 * 54.99734 * 13 10 8 36 36 H 1.09006 * 109.46693 * 300.00271 * 14 13 10 37 37 H 1.08995 * 109.47039 * 59.99623 * 14 13 10 38 38 H 0.96997 * 120.00232 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.49370 * 180.19956 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2454 2.0240 1.1523 5 6 2.6865 3.2702 1.1951 6 6 2.9199 3.9454 -0.0001 7 7 3.3818 5.2668 -0.0001 8 6 2.9753 6.1228 0.9585 9 8 2.2776 5.7274 1.8684 10 6 3.3877 7.5710 0.8996 11 1 3.3454 7.9191 -0.1325 12 7 2.4755 8.3739 1.7249 13 6 4.8159 7.7166 1.4287 14 6 5.2796 9.1641 1.2538 15 6 6.6865 9.3072 1.7744 16 1 7.1985 8.4516 2.1891 17 6 7.3196 10.5310 1.7223 18 7 6.6959 11.5731 1.2179 19 14 9.0633 10.7087 2.3684 20 1 9.5374 9.3979 2.8808 21 1 9.9541 11.1630 1.2705 22 1 9.0846 11.7065 3.4681 23 6 2.6865 3.2702 -1.1951 24 7 2.2451 2.0241 -1.1523 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.8586 3.7584 2.1429 31 1 3.9944 5.5665 -0.6898 32 1 2.4965 8.0703 2.6870 33 1 2.6913 9.3567 1.6511 34 1 4.8402 7.4525 2.4860 35 1 5.4786 7.0530 0.8732 36 1 5.2552 9.4281 0.1964 37 1 4.6169 9.8276 1.8093 38 1 7.1414 12.4339 1.1809 39 1 2.8587 3.7584 -2.1430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424186243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:23 Heat of formation + Delta-G solvation = -28.745796 kcal Electronic energy + Delta-G solvation = -20762.334464 eV Core-core repulsion = 17510.336451 eV Total energy + Delta-G solvation = -3251.998013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.48665 -40.97820 -37.36405 -36.61135 -34.90204 -34.78046 -34.47983 -31.70301 -30.81497 -28.22890 -26.34721 -25.88959 -25.06992 -23.01600 -22.41105 -21.39447 -19.44797 -18.67993 -18.47921 -18.01638 -17.72059 -16.55057 -16.38959 -15.98808 -15.80507 -15.72293 -15.07984 -14.89649 -14.76279 -14.68486 -14.51884 -14.04690 -13.52453 -13.38794 -12.98949 -12.91560 -12.72749 -12.52412 -12.24174 -12.07228 -12.00810 -11.90708 -11.80859 -11.73316 -11.28712 -10.93776 -10.56449 -10.32598 -9.70822 -9.53487 -8.22017 -6.31552 -0.29688 -0.03382 1.37520 1.38336 1.41193 1.51579 1.73682 2.39482 2.64364 2.95670 3.11583 3.12392 3.35176 3.57840 3.70908 3.86981 4.07126 4.10136 4.20119 4.29132 4.38258 4.60688 4.64377 4.70456 4.82021 4.98245 5.00859 5.08955 5.11785 5.28963 5.43996 5.47899 5.66364 5.81402 5.87144 5.99514 6.20878 6.23463 6.44827 6.84722 6.92038 7.01076 7.37794 8.88757 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034437 B = 0.002982 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.884626 B = 9388.683899 C = 9707.135749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C 0.283 3.717 4 N -0.518 5.518 5 C 0.131 3.869 6 C 0.039 3.961 7 N -0.648 5.648 8 C 0.531 3.469 9 O -0.545 6.545 10 C 0.087 3.913 11 H 0.121 0.879 12 N -0.832 5.832 13 C -0.123 4.123 14 C 0.029 3.971 15 C -0.542 4.542 16 H 0.055 0.945 17 C 0.006 3.994 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.282 1.282 23 C 0.137 3.863 24 N -0.507 5.507 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.433 0.567 32 H 0.345 0.655 33 H 0.356 0.644 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.006 0.994 37 H 0.003 0.997 38 H 0.263 0.737 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -18.481 -6.329 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C 0.016 3.984 4 N -0.232 5.232 5 C -0.036 4.036 6 C -0.061 4.061 7 N -0.297 5.297 8 C 0.319 3.681 9 O -0.421 6.421 10 C -0.028 4.028 11 H 0.139 0.861 12 N -0.364 5.364 13 C -0.163 4.163 14 C -0.008 4.008 15 C -0.581 4.581 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.207 1.207 23 C -0.032 4.032 24 N -0.220 5.220 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.183 0.817 31 H 0.274 0.726 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.622 -19.726 -6.172 22.799 hybrid contribution 2.422 2.098 0.756 3.292 sum -7.200 -17.628 -5.416 19.797 Atomic orbital electron populations 1.21668 0.93011 1.03632 1.01404 1.20452 0.97150 0.86367 1.05117 1.23818 0.92594 0.98730 0.83245 1.68309 1.13741 1.09982 1.31196 1.23485 0.92184 0.89036 0.98920 1.19641 1.02650 0.87070 0.96749 1.43239 1.47715 1.07128 1.31571 1.21109 0.77847 0.88440 0.80678 1.90648 1.37918 1.78815 1.34698 1.21395 0.91450 0.88713 1.01263 0.86140 1.58758 1.54382 1.08192 1.15029 1.22180 0.94246 0.99556 1.00343 1.18979 0.94718 0.91188 0.95952 1.21650 1.00802 0.95171 1.40429 0.92705 1.25827 1.02055 0.95818 0.95580 1.70050 1.39029 1.00963 1.46551 0.85537 0.79981 0.78248 0.78108 1.19048 1.20360 1.20747 1.23701 0.91360 0.90082 0.98056 1.68310 1.13493 1.10017 1.30208 0.93761 0.92961 0.89082 0.87765 0.88633 0.81720 0.72631 0.84164 0.82815 0.93445 0.91046 0.97576 0.97851 0.92768 0.77455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.05 -0.85 6.37 29.85 0.19 -0.66 16 3 C 0.28 6.66 6.89 138.75 0.96 7.62 16 4 N -0.52 -14.22 10.32 -187.38 -1.93 -16.15 16 5 C 0.13 3.67 9.98 84.87 0.85 4.52 16 6 C 0.04 0.90 6.34 38.32 0.24 1.14 16 7 N -0.65 -13.75 5.36 -302.91 -1.62 -15.38 16 8 C 0.53 14.94 6.94 87.65 0.61 15.55 16 9 O -0.55 -18.78 13.75 -3.04 -0.04 -18.83 16 10 C 0.09 2.52 3.21 44.17 0.14 2.67 16 11 H 0.12 3.08 8.14 -2.38 -0.02 3.07 16 12 N -0.83 -25.79 8.94 -171.80 -1.54 -27.32 16 13 C -0.12 -4.29 4.78 30.60 0.15 -4.14 16 14 C 0.03 1.32 4.74 29.85 0.14 1.46 16 15 C -0.54 -28.50 9.11 25.60 0.23 -28.27 16 16 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 17 C 0.01 0.31 5.46 84.66 0.46 0.77 16 18 N -0.93 -52.75 13.29 21.45 0.28 -52.47 16 19 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 C 0.14 2.65 11.26 84.86 0.96 3.60 16 24 N -0.51 -11.29 10.32 -187.39 -1.93 -13.23 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.17 5.04 6.33 -2.91 -0.02 5.03 16 31 H 0.43 6.33 8.83 -92.71 -0.82 5.51 16 32 H 0.35 10.98 8.58 -89.69 -0.77 10.21 16 33 H 0.36 11.28 7.55 -89.70 -0.68 10.61 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 37 H 0.00 0.16 6.87 -2.39 -0.02 0.14 16 38 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -66.91 333.37 -0.29 -67.20 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -1.17 Total: 28.91 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 5.64 Total: 2.92 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -6.74 Total: -124.55 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.04 Total: -18.83 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -66.91 -0.29 -67.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424186243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.459 kcal (2) G-P(sol) polarization free energy of solvation -66.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds