Wall clock time and date at job start Tue Mar 31 2020 00:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46992 * 2 1 4 4 N 1.31799 * 119.03974 * 269.72506 * 3 2 1 5 5 C 1.32261 * 120.89314 * 179.76126 * 4 3 2 6 6 C 1.39236 * 119.01525 * 0.50773 * 5 4 3 7 7 N 1.39980 * 120.87081 * 179.77587 * 6 5 4 8 8 C 1.34771 * 119.99964 * 32.39001 * 7 6 5 9 9 O 1.21287 * 120.00134 * 5.26223 * 8 7 6 10 10 C 1.50700 * 119.99926 * 185.26461 * 8 7 6 11 11 H 1.09001 * 109.47322 * 320.00227 * 10 8 7 12 12 N 1.46903 * 109.47418 * 199.99734 * 10 8 7 13 13 C 1.53007 * 109.47091 * 80.00172 * 10 8 7 14 14 C 1.53001 * 109.46899 * 185.00084 * 13 10 8 15 15 C 1.50700 * 109.47063 * 179.97438 * 14 13 10 16 16 H 1.08003 * 119.99847 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99989 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99758 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47342 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47024 * 119.99670 * 19 17 15 22 22 H 1.48493 * 109.47178 * 240.00016 * 19 17 15 23 23 C 1.39236 * 118.26055 * 359.75030 * 6 5 4 24 24 N 1.31795 * 119.03796 * 90.00241 * 3 2 1 25 25 H 1.09010 * 109.46868 * 59.99982 * 1 2 3 26 26 H 1.08998 * 109.47395 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47200 * 300.00286 * 1 2 3 28 28 H 1.08999 * 109.47450 * 240.00166 * 2 1 3 29 29 H 1.08998 * 109.47205 * 119.99807 * 2 1 3 30 30 H 1.07998 * 120.49769 * 180.28366 * 5 4 3 31 31 H 0.97002 * 119.99543 * 212.39369 * 7 6 5 32 32 H 1.00898 * 111.00241 * 300.00237 * 12 10 8 33 33 H 1.00902 * 110.99444 * 63.95140 * 12 10 8 34 34 H 1.09000 * 109.46938 * 304.99837 * 13 10 8 35 35 H 1.08992 * 109.47296 * 64.99742 * 13 10 8 36 36 H 1.09000 * 109.47123 * 299.99639 * 14 13 10 37 37 H 1.09001 * 109.47270 * 59.99849 * 14 13 10 38 38 H 0.97001 * 120.00005 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.49314 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2508 2.0222 -1.1523 5 6 2.6871 3.2700 -1.1951 6 6 2.9253 3.9436 0.0000 7 7 3.3918 5.2633 0.0000 8 6 3.0269 6.1070 -0.9855 9 8 2.2200 5.7532 -1.8190 10 6 3.6216 7.4902 -1.0520 11 1 3.6996 7.9009 -0.0453 12 7 2.7595 8.3552 -1.8684 13 6 5.0139 7.4170 -1.6822 14 6 5.6678 8.7994 -1.6363 15 6 7.0394 8.7273 -2.2565 16 1 7.4080 7.7890 -2.6442 17 6 7.8240 9.8587 -2.3279 18 7 7.3754 11.0010 -1.8554 19 14 9.5245 9.7690 -3.0961 20 1 9.7906 8.3799 -3.5487 21 1 9.5913 10.6895 -4.2595 22 1 10.5431 10.1663 -2.0913 23 6 2.6867 3.2702 1.1951 24 7 2.2456 2.0240 1.1523 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.8596 3.7581 -2.1429 31 1 3.9778 5.5705 0.7094 32 1 2.6713 7.9956 -2.8069 33 1 1.8538 8.4716 -1.4391 34 1 5.6269 6.7065 -1.1276 35 1 4.9270 7.0904 -2.7184 36 1 5.0548 9.5099 -2.1909 37 1 5.7547 9.1260 -0.6000 38 1 7.9273 11.7971 -1.9060 39 1 2.8596 3.7580 2.1430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424186244.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:27 Heat of formation + Delta-G solvation = -29.417943 kcal Electronic energy + Delta-G solvation = -20786.499493 eV Core-core repulsion = 17534.472334 eV Total energy + Delta-G solvation = -3252.027159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.52939 -41.06589 -37.17352 -36.60961 -34.89980 -34.79574 -34.50087 -31.94851 -30.79448 -28.20094 -26.32998 -25.91573 -24.95382 -23.01825 -22.35527 -21.42663 -19.41364 -18.67726 -18.38850 -17.96282 -17.75554 -16.88750 -16.49650 -16.27569 -15.90545 -15.50410 -15.13130 -15.05742 -14.84497 -14.55121 -14.29578 -13.86018 -13.49584 -13.40721 -12.95554 -12.83251 -12.55095 -12.31473 -12.24092 -12.11718 -12.06539 -11.94403 -11.78029 -11.67149 -11.27821 -11.03076 -10.49398 -10.39557 -9.70861 -9.55595 -8.14092 -6.23514 -0.33919 -0.06620 1.30516 1.41289 1.43133 1.54465 1.76420 2.44379 2.61968 2.92910 3.08180 3.19668 3.31006 3.47212 3.65951 3.85745 4.04627 4.07069 4.26581 4.27344 4.36213 4.58226 4.64910 4.76993 4.92192 4.95957 4.99206 5.09556 5.25093 5.26414 5.40618 5.58539 5.83547 5.85842 5.99305 6.00267 6.20429 6.30669 6.48751 6.84169 6.95976 6.97850 7.44787 8.97114 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030596 B = 0.003072 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.919931 B = 9111.005928 C = 9515.280963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C 0.283 3.717 4 N -0.517 5.517 5 C 0.131 3.869 6 C 0.039 3.961 7 N -0.645 5.645 8 C 0.493 3.507 9 O -0.556 6.556 10 C 0.092 3.908 11 H 0.123 0.877 12 N -0.818 5.818 13 C -0.084 4.084 14 C 0.038 3.962 15 C -0.541 4.541 16 H 0.055 0.945 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.136 3.864 24 N -0.506 5.506 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.161 0.839 31 H 0.434 0.566 32 H 0.347 0.653 33 H 0.349 0.651 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.007 0.993 37 H -0.002 1.002 38 H 0.262 0.738 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 -18.290 8.284 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C 0.016 3.984 4 N -0.231 5.231 5 C -0.037 4.037 6 C -0.061 4.061 7 N -0.293 5.293 8 C 0.280 3.720 9 O -0.433 6.433 10 C -0.024 4.024 11 H 0.140 0.860 12 N -0.347 5.347 13 C -0.122 4.122 14 C 0.001 3.999 15 C -0.580 4.580 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.782 3.218 20 H -0.189 1.189 21 H -0.208 1.208 22 H -0.204 1.204 23 C -0.034 4.034 24 N -0.219 5.219 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.179 0.821 31 H 0.275 0.725 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.017 0.983 38 H 0.070 0.930 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -11.575 -18.652 7.808 23.299 hybrid contribution 0.880 0.771 -0.413 1.241 sum -10.695 -17.881 7.395 22.109 Atomic orbital electron populations 1.21666 0.92954 1.03649 1.01403 1.20452 0.97199 0.86361 1.05108 1.23807 0.92688 0.98754 0.83196 1.68293 1.13725 1.09868 1.31263 1.23318 0.92524 0.89185 0.98692 1.19688 1.02239 0.87491 0.96725 1.43485 1.49347 1.07510 1.28989 1.22899 0.80298 0.89065 0.79766 1.90682 1.34467 1.77986 1.40211 1.21695 0.94326 0.85377 1.00972 0.85981 1.58970 1.18704 1.50499 1.06511 1.21430 0.91729 0.99660 0.99414 1.18836 0.93376 0.92147 0.95515 1.21763 1.02169 0.95095 1.38934 0.92681 1.25857 1.02257 0.95246 0.96188 1.70095 1.38726 1.00401 1.47692 0.85536 0.79820 0.78329 0.78160 1.18905 1.20839 1.20365 1.23699 0.91538 0.90095 0.98044 1.68300 1.13443 1.09999 1.30191 0.93769 0.89088 0.92907 0.88688 0.87765 0.82149 0.72533 0.83912 0.83756 0.91058 0.93700 0.97493 0.98349 0.92962 0.77405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.05 -0.85 6.37 29.85 0.19 -0.66 16 3 C 0.28 6.55 6.89 138.75 0.96 7.50 16 4 N -0.52 -14.03 10.32 -187.39 -1.93 -15.96 16 5 C 0.13 3.58 9.94 84.87 0.84 4.43 16 6 C 0.04 0.86 6.34 38.32 0.24 1.11 16 7 N -0.65 -12.90 5.37 -302.92 -1.63 -14.53 16 8 C 0.49 12.88 6.84 87.66 0.60 13.48 16 9 O -0.56 -17.77 13.95 -3.05 -0.04 -17.81 16 10 C 0.09 2.62 3.15 44.17 0.14 2.76 16 11 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 12 N -0.82 -24.59 8.44 -171.79 -1.45 -26.04 16 13 C -0.08 -3.05 4.78 30.60 0.15 -2.90 16 14 C 0.04 1.88 4.86 29.85 0.15 2.02 16 15 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 16 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 17 C 0.00 0.13 5.46 84.66 0.46 0.60 16 18 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 19 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 C 0.14 2.52 11.26 84.87 0.96 3.47 16 24 N -0.51 -11.03 10.32 -187.38 -1.93 -12.96 16 25 H 0.04 0.75 8.14 -2.38 -0.02 0.74 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.16 4.83 6.47 -2.91 -0.02 4.82 16 31 H 0.43 5.84 8.82 -92.71 -0.82 5.02 16 32 H 0.35 10.77 8.58 -89.70 -0.77 10.00 16 33 H 0.35 8.84 9.06 -89.69 -0.81 8.02 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 37 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -70.56 335.52 -0.36 -70.92 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -1.31 Total: 24.61 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.63 Total: 1.15 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -6.66 Total: -124.47 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.04 Total: -17.81 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.56 -0.36 -70.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424186244.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.501 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds