Wall clock time and date at job start Tue Mar 31 2020 01:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99606 * 2 1 4 4 C 1.53003 * 109.46999 * 124.99892 * 3 2 1 5 5 N 1.46492 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.34834 * 126.59503 * 125.34065 * 5 4 3 7 7 C 1.36670 * 106.83175 * 180.14906 * 6 5 4 8 8 C 1.47429 * 125.78149 * 179.83679 * 7 6 5 9 9 O 1.21626 * 120.00219 * 355.32813 * 8 7 6 10 10 N 1.34775 * 119.99999 * 175.32410 * 8 7 6 11 11 C 1.36963 * 119.99883 * 184.72358 * 10 8 7 12 12 H 1.08001 * 120.00244 * 325.60767 * 11 10 8 13 13 C 1.38985 * 119.99865 * 145.60720 * 11 10 8 14 14 N 1.31404 * 120.00015 * 158.10260 * 13 11 10 15 15 Si 1.86805 * 120.00150 * 338.10761 * 13 11 10 16 16 H 1.48501 * 109.47036 * 95.55763 * 15 13 11 17 17 H 1.48500 * 109.47069 * 215.55976 * 15 13 11 18 18 H 1.48500 * 109.46724 * 335.55970 * 15 13 11 19 19 C 1.46497 * 120.00159 * 5.00184 * 10 8 7 20 20 C 1.53009 * 109.47037 * 83.00401 * 19 10 8 21 21 C 1.52995 * 109.46969 * 175.52018 * 20 19 10 22 22 N 1.34421 * 108.43749 * 359.57928 * 7 6 5 23 23 N 1.28758 * 109.53307 * 0.25964 * 22 7 6 24 24 H 1.07998 * 120.00214 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99799 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00268 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47179 * 4.99863 * 3 2 1 28 28 H 1.08999 * 109.46979 * 244.99784 * 3 2 1 29 29 H 1.09006 * 109.46580 * 59.99888 * 4 3 2 30 30 H 1.09001 * 109.47050 * 300.00306 * 4 3 2 31 31 H 1.08000 * 126.58284 * 359.97438 * 6 5 4 32 32 H 0.97007 * 119.99849 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.47187 * 203.00200 * 19 10 8 34 34 H 1.09001 * 109.46823 * 323.00636 * 19 10 8 35 35 H 1.09000 * 109.46891 * 295.51868 * 20 19 10 36 36 H 1.09001 * 109.47043 * 55.52273 * 20 19 10 37 37 H 1.09008 * 109.46968 * 64.72590 * 21 20 19 38 38 H 1.09000 * 109.46935 * 184.72512 * 21 20 19 39 39 H 1.08999 * 109.47317 * 304.73036 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 7 3.7678 2.6017 1.1814 6 6 3.8545 3.4801 2.2005 7 6 4.6298 4.5175 1.7640 8 6 4.9911 5.7129 2.5476 9 8 4.5215 5.8774 3.6574 10 7 5.8419 6.6234 2.0341 11 6 6.2533 7.6833 2.7978 12 1 5.5771 8.1286 3.5126 13 6 7.5409 8.1860 2.6529 14 7 7.8127 9.4152 3.0297 15 14 8.8853 7.1142 1.9225 16 1 9.0064 7.3939 0.4691 17 1 10.1759 7.4131 2.5934 18 1 8.5421 5.6836 2.1243 19 6 6.3220 6.4827 0.6572 20 6 5.2840 7.0615 -0.3064 21 6 5.8325 7.0164 -1.7340 22 7 5.0118 4.2607 0.5010 23 7 4.5190 3.1327 0.1232 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 3.7399 0.5066 1.0920 30 1 2.4772 1.2356 2.1130 31 1 3.3967 3.3839 3.1740 32 1 8.7115 9.7658 2.9289 33 1 7.2630 7.0209 0.5437 34 1 6.4776 5.4274 0.4328 35 1 4.3682 6.4730 -0.2503 36 1 5.0696 8.0944 -0.0320 37 1 5.9679 5.9786 -2.0386 38 1 5.1294 7.5044 -2.4089 39 1 6.7910 7.5340 -1.7715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424725228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:21 Heat of formation + Delta-G solvation = 99.130493 kcal Electronic energy + Delta-G solvation = -21764.249086 eV Core-core repulsion = 18517.796206 eV Total energy + Delta-G solvation = -3246.452881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82463 -38.49438 -36.51925 -35.43009 -33.73564 -32.73167 -31.46592 -30.58074 -29.36501 -25.88462 -25.24075 -24.54119 -22.36156 -21.53250 -21.16661 -20.25891 -19.31699 -17.16568 -16.80639 -16.02559 -15.88243 -15.75330 -15.23282 -14.56518 -14.45936 -13.99517 -13.71723 -13.58787 -13.25282 -13.01816 -12.85409 -12.33678 -12.25183 -12.04765 -11.87932 -11.56662 -11.52308 -11.36226 -11.07123 -10.70911 -10.53685 -10.29265 -10.17321 -9.85715 -9.76482 -9.48566 -9.10051 -8.78644 -8.64139 -7.70451 -6.39390 -3.90166 1.44948 1.80920 2.28295 2.32721 3.12881 3.27990 3.34595 4.16305 4.17818 4.25004 4.38582 4.47803 4.58941 4.72117 4.83313 4.93266 4.98891 5.25965 5.31288 5.45661 5.51660 5.60240 5.68269 5.71984 5.76330 6.01645 6.11938 6.18515 6.20062 6.30400 6.50344 6.52071 6.60360 6.63912 6.85035 7.08441 7.56484 8.27473 8.33021 8.57283 8.96014 9.34620 9.80301 10.71641 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.004536 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.074012 B = 6170.833002 C = 6561.321036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.130 3.870 5 N -0.369 5.369 6 C 0.070 3.930 7 C -0.067 4.067 8 C 0.531 3.469 9 O -0.571 6.571 10 N -0.440 5.440 11 C -0.313 4.313 12 H 0.110 0.890 13 C 0.062 3.938 14 N -0.857 5.857 15 Si 0.877 3.123 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.263 1.263 19 C 0.084 3.916 20 C -0.123 4.123 21 C -0.144 4.144 22 N -0.207 5.207 23 N -0.086 5.086 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.199 0.801 32 H 0.275 0.725 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -17.098 -7.648 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.175 4.175 3 C -0.144 4.144 4 C 0.009 3.991 5 N -0.156 5.156 6 C -0.086 4.086 7 C -0.207 4.207 8 C 0.318 3.682 9 O -0.453 6.453 10 N -0.158 5.158 11 C -0.440 4.440 12 H 0.128 0.872 13 C -0.144 4.144 14 N -0.493 5.493 15 Si 0.705 3.295 16 H -0.199 1.199 17 H -0.215 1.215 18 H -0.187 1.187 19 C -0.040 4.040 20 C -0.161 4.161 21 C -0.202 4.202 22 N -0.080 5.080 23 N -0.065 5.065 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.132 0.868 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.216 0.784 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.174 -17.073 -8.486 21.158 hybrid contribution 0.415 -0.468 0.593 0.862 sum -8.759 -17.540 -7.893 21.135 Atomic orbital electron populations 1.23944 0.95907 1.02199 1.00004 1.22773 0.96007 0.97769 1.00908 1.21026 0.98084 0.96489 0.98844 1.21865 0.94247 0.81943 1.01065 1.50397 1.36630 1.17403 1.11165 1.23278 0.99960 0.90082 0.95253 1.22112 1.05527 1.00510 0.92505 1.16742 0.85188 0.81260 0.85030 1.90652 1.57147 1.77255 1.20282 1.43609 1.40617 1.21436 1.10128 1.19122 0.98257 1.05751 1.20898 0.87200 1.25320 0.97503 0.95274 0.96321 1.69756 1.21728 1.12858 1.44953 0.86962 0.81471 0.82522 0.78560 1.19877 1.21524 1.18733 1.22236 0.97143 1.02230 0.82387 1.21697 0.98890 1.01447 0.94113 1.21664 1.00573 1.01431 0.96529 1.74791 1.15242 1.06895 1.11073 1.81862 1.09522 1.06203 1.08889 0.88382 0.88152 0.86833 0.90580 0.89101 0.88728 0.87968 0.78448 0.91473 0.91663 0.88857 0.92379 0.91669 0.92680 0.93319 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 14.32 29.01 0.42 -0.69 16 2 C -0.16 -0.97 9.52 -36.03 -0.34 -1.31 16 3 C -0.11 -0.83 5.86 -27.88 -0.16 -1.00 16 4 C 0.13 1.07 6.52 -4.04 -0.03 1.04 16 5 N -0.37 -4.92 3.69 -61.04 -0.23 -5.14 16 6 C 0.07 1.08 11.28 -16.80 -0.19 0.89 16 7 C -0.07 -1.36 6.55 -83.56 -0.55 -1.90 16 8 C 0.53 13.18 7.56 -12.52 -0.09 13.08 16 9 O -0.57 -15.57 16.68 5.25 0.09 -15.48 16 10 N -0.44 -11.38 2.25 -116.02 -0.26 -11.64 16 11 C -0.31 -9.09 9.46 -14.98 -0.14 -9.23 16 12 H 0.11 3.53 7.80 -52.49 -0.41 3.12 16 13 C 0.06 1.76 5.30 -17.46 -0.09 1.67 16 14 N -0.86 -24.98 13.96 55.50 0.77 -24.20 16 15 Si 0.88 21.44 24.87 -169.99 -4.23 17.21 16 16 H -0.27 -6.25 6.67 56.52 0.38 -5.87 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.26 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.08 1.90 3.55 -4.04 -0.01 1.88 16 20 C -0.12 -2.45 5.83 -26.73 -0.16 -2.61 16 21 C -0.14 -2.38 9.91 37.15 0.37 -2.01 16 22 N -0.21 -3.98 7.57 32.84 0.25 -3.73 16 23 N -0.09 -1.42 13.64 60.35 0.82 -0.59 16 24 H 0.10 0.60 7.84 -52.49 -0.41 0.18 16 25 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 26 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 27 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.20 2.50 8.06 -52.49 -0.42 2.07 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.54 3.20 -51.93 -0.17 1.38 16 34 H 0.09 2.05 5.21 -51.93 -0.27 1.78 16 35 H 0.06 1.15 7.02 -51.93 -0.36 0.79 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -33.38 327.47 -4.24 -37.62 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.41 Total: 1.20 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.98 Total: -0.18 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 1.36 Total: -45.31 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.23 Total: 17.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.38 -4.24 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424725228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.752 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds