Wall clock time and date at job start Tue Mar 31 2020 01:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99606 * 2 1 4 4 C 1.53003 * 109.46999 * 124.99892 * 3 2 1 5 5 N 1.46492 * 109.47147 * 179.97438 * 4 3 2 6 6 C 1.34834 * 126.59503 * 125.34065 * 5 4 3 7 7 C 1.36670 * 106.83175 * 180.14906 * 6 5 4 8 8 C 1.47429 * 125.78149 * 179.83679 * 7 6 5 9 9 O 1.21626 * 120.00219 * 355.32813 * 8 7 6 10 10 N 1.34775 * 119.99999 * 175.32410 * 8 7 6 11 11 C 1.36963 * 119.99883 * 184.72358 * 10 8 7 12 12 H 1.08001 * 120.00244 * 325.60767 * 11 10 8 13 13 C 1.38985 * 119.99865 * 145.60720 * 11 10 8 14 14 N 1.31404 * 120.00015 * 158.10260 * 13 11 10 15 15 Si 1.86805 * 120.00150 * 338.10761 * 13 11 10 16 16 H 1.48501 * 109.47036 * 95.55763 * 15 13 11 17 17 H 1.48500 * 109.47069 * 215.55976 * 15 13 11 18 18 H 1.48500 * 109.46724 * 335.55970 * 15 13 11 19 19 C 1.46497 * 120.00159 * 5.00184 * 10 8 7 20 20 C 1.53009 * 109.47037 * 83.00401 * 19 10 8 21 21 C 1.52995 * 109.46969 * 175.52018 * 20 19 10 22 22 N 1.34421 * 108.43749 * 359.57928 * 7 6 5 23 23 N 1.28758 * 109.53307 * 0.25964 * 22 7 6 24 24 H 1.07998 * 120.00214 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99799 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00268 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47179 * 4.99863 * 3 2 1 28 28 H 1.08999 * 109.46979 * 244.99784 * 3 2 1 29 29 H 1.09006 * 109.46580 * 59.99888 * 4 3 2 30 30 H 1.09001 * 109.47050 * 300.00306 * 4 3 2 31 31 H 1.08000 * 126.58284 * 359.97438 * 6 5 4 32 32 H 0.97007 * 119.99849 * 179.97438 * 14 13 11 33 33 H 1.08995 * 109.47187 * 203.00200 * 19 10 8 34 34 H 1.09001 * 109.46823 * 323.00636 * 19 10 8 35 35 H 1.09000 * 109.46891 * 295.51868 * 20 19 10 36 36 H 1.09001 * 109.47043 * 55.52273 * 20 19 10 37 37 H 1.09008 * 109.46968 * 64.72590 * 21 20 19 38 38 H 1.09000 * 109.46935 * 184.72512 * 21 20 19 39 39 H 1.08999 * 109.47317 * 304.73036 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 7 3.7678 2.6017 1.1814 6 6 3.8545 3.4801 2.2005 7 6 4.6298 4.5175 1.7640 8 6 4.9911 5.7129 2.5476 9 8 4.5215 5.8774 3.6574 10 7 5.8419 6.6234 2.0341 11 6 6.2533 7.6833 2.7978 12 1 5.5771 8.1286 3.5126 13 6 7.5409 8.1860 2.6529 14 7 7.8127 9.4152 3.0297 15 14 8.8853 7.1142 1.9225 16 1 9.0064 7.3939 0.4691 17 1 10.1759 7.4131 2.5934 18 1 8.5421 5.6836 2.1243 19 6 6.3220 6.4827 0.6572 20 6 5.2840 7.0615 -0.3064 21 6 5.8325 7.0164 -1.7340 22 7 5.0118 4.2607 0.5010 23 7 4.5190 3.1327 0.1232 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 3.7399 0.5066 1.0920 30 1 2.4772 1.2356 2.1130 31 1 3.3967 3.3839 3.1740 32 1 8.7115 9.7658 2.9289 33 1 7.2630 7.0209 0.5437 34 1 6.4776 5.4274 0.4328 35 1 4.3682 6.4730 -0.2503 36 1 5.0696 8.0944 -0.0320 37 1 5.9679 5.9786 -2.0386 38 1 5.1294 7.5044 -2.4089 39 1 6.7910 7.5340 -1.7715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424725228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:21 Heat of formation + Delta-G solvation = 76.558887 kcal Electronic energy + Delta-G solvation = -21765.227865 eV Core-core repulsion = 18517.796206 eV Total energy + Delta-G solvation = -3247.431659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.16568 -40.37731 -37.38639 -37.22479 -34.85189 -34.47983 -33.33023 -31.91812 -30.31188 -27.64787 -27.01592 -25.48391 -23.98541 -22.80148 -22.64587 -20.97921 -20.71686 -19.01960 -18.38557 -17.71856 -17.16817 -16.95457 -16.35217 -16.07152 -15.71789 -15.57052 -15.35187 -14.88951 -14.70676 -14.37984 -14.12494 -13.89044 -13.62761 -13.54885 -13.21991 -12.97160 -12.70502 -12.50990 -12.37875 -12.11445 -12.00694 -11.94961 -11.80451 -11.37952 -11.12891 -11.10251 -10.60500 -10.30712 -10.18172 -9.74075 -8.55653 -6.12887 0.21925 0.76341 1.11859 1.19507 1.30870 1.41137 1.44714 2.14872 2.34829 2.61272 2.93807 3.34591 3.46570 3.81365 3.88613 4.02840 4.06417 4.11555 4.23563 4.26510 4.39418 4.42447 4.49676 4.56305 4.63866 4.80072 4.92687 5.00976 5.06939 5.09436 5.19121 5.30105 5.46522 5.53361 5.54652 5.73880 5.85552 6.01089 6.47935 6.83499 7.02296 7.25283 7.79054 8.60650 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.004536 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.074012 B = 6170.833002 C = 6561.321036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.102 4.102 4 C 0.119 3.881 5 N -0.347 5.347 6 C 0.099 3.901 7 C -0.108 4.108 8 C 0.533 3.467 9 O -0.608 6.608 10 N -0.457 5.457 11 C -0.335 4.335 12 H 0.057 0.943 13 C 0.022 3.978 14 N -0.899 5.899 15 Si 0.940 3.060 16 H -0.243 1.243 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.086 3.914 20 C -0.116 4.116 21 C -0.136 4.136 22 N -0.222 5.222 23 N -0.085 5.085 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.131 0.869 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.229 0.771 32 H 0.283 0.717 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 -20.545 -9.417 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.175 4.175 3 C -0.140 4.140 4 C 0.000 4.000 5 N -0.133 5.133 6 C -0.058 4.058 7 C -0.247 4.247 8 C 0.321 3.679 9 O -0.492 6.492 10 N -0.175 5.175 11 C -0.462 4.462 12 H 0.075 0.925 13 C -0.181 4.181 14 N -0.536 5.536 15 Si 0.764 3.236 16 H -0.169 1.169 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.037 4.037 20 C -0.155 4.155 21 C -0.194 4.194 22 N -0.096 5.096 23 N -0.065 5.065 24 H 0.111 0.889 25 H 0.132 0.868 26 H 0.148 0.852 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.152 0.848 31 H 0.246 0.754 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.432 -20.546 -10.297 24.842 hybrid contribution 0.250 0.449 1.175 1.283 sum -9.182 -20.096 -9.122 23.903 Atomic orbital electron populations 1.24097 0.96061 1.02698 0.99396 1.22765 0.95968 0.97444 1.01352 1.20952 0.97719 0.97230 0.98066 1.22467 0.94754 0.79886 1.02879 1.50723 1.35083 1.18049 1.09480 1.23617 0.97431 0.88482 0.96258 1.21513 1.09301 1.00394 0.93511 1.17329 0.83478 0.82037 0.85021 1.90606 1.58113 1.78410 1.22118 1.43686 1.41382 1.21198 1.11238 1.18739 0.98349 1.07611 1.21543 0.92489 1.25983 0.99195 0.96131 0.96814 1.69840 1.22716 1.14347 1.46670 0.85966 0.78172 0.79994 0.79463 1.16860 1.20673 1.19098 1.22369 0.97288 1.02958 0.81093 1.21626 0.98418 0.99608 0.95855 1.21622 1.00992 1.02610 0.94203 1.74684 1.16102 1.08054 1.10721 1.81768 1.09671 1.05332 1.09737 0.88874 0.86825 0.85156 0.91618 0.90339 0.86366 0.84775 0.75439 0.90746 0.92654 0.87602 0.92506 0.94040 0.91413 0.91136 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 14.32 67.78 0.97 -0.73 16 2 C -0.16 -1.41 9.52 25.65 0.24 -1.17 16 3 C -0.10 -1.27 5.86 29.85 0.17 -1.10 16 4 C 0.12 1.44 6.52 86.38 0.56 2.00 16 5 N -0.35 -8.09 3.69 -347.02 -1.28 -9.37 16 6 C 0.10 2.83 11.28 83.86 0.95 3.77 16 7 C -0.11 -4.25 6.55 40.80 0.27 -3.99 16 8 C 0.53 27.11 7.56 86.66 0.65 27.76 16 9 O -0.61 -34.42 16.68 -4.11 -0.07 -34.49 16 10 N -0.46 -24.38 2.25 -639.23 -1.44 -25.82 16 11 C -0.33 -20.55 9.46 84.07 0.80 -19.75 16 12 H 0.06 3.99 7.80 -2.91 -0.02 3.97 16 13 C 0.02 1.30 5.30 84.94 0.45 1.75 16 14 N -0.90 -54.34 13.96 21.67 0.30 -54.04 16 15 Si 0.94 44.54 24.87 68.60 1.71 46.25 16 16 H -0.24 -10.37 6.67 99.48 0.66 -9.71 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 C 0.09 3.87 3.55 86.38 0.31 4.18 16 20 C -0.12 -4.64 5.83 30.60 0.18 -4.46 16 21 C -0.14 -4.23 9.91 71.98 0.71 -3.51 16 22 N -0.22 -8.21 7.57 -50.01 -0.38 -8.59 16 23 N -0.09 -2.60 13.64 37.02 0.51 -2.10 16 24 H 0.09 0.93 7.84 -2.91 -0.02 0.91 16 25 H 0.11 0.74 8.06 -2.91 -0.02 0.72 16 26 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 27 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.13 0.88 8.08 -2.39 -0.02 0.87 16 31 H 0.23 4.98 8.06 -2.91 -0.02 4.96 16 32 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 33 H 0.06 2.58 3.20 -2.39 -0.01 2.57 16 34 H 0.11 4.54 5.21 -2.39 -0.01 4.52 16 35 H 0.06 2.25 7.02 -2.39 -0.02 2.23 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -77.24 327.47 6.61 -70.63 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.00 Total: 12.77 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.26 Total: 4.76 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -2.29 Total: -99.91 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.07 Total: -34.49 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.71 Total: 46.25 kcal Total: -77.24 6.61 -70.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424725228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.184 kcal (2) G-P(sol) polarization free energy of solvation -77.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds