Wall clock time and date at job start Tue Mar 31 2020 00:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00074 * 2 1 4 4 C 1.52997 * 109.47226 * 124.99735 * 3 2 1 5 5 N 1.46497 * 109.47161 * 179.97438 * 4 3 2 6 6 C 1.34810 * 126.59806 * 125.26876 * 5 4 3 7 7 C 1.36593 * 106.84610 * 180.11010 * 6 5 4 8 8 C 1.47520 * 125.77505 * 179.90229 * 7 6 5 9 9 O 1.21600 * 120.00028 * 359.71212 * 8 7 6 10 10 N 1.34777 * 120.00087 * 179.71458 * 8 7 6 11 11 C 1.46501 * 120.00027 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47030 * 324.99761 * 11 10 8 13 13 C 1.50700 * 109.47229 * 205.00369 * 11 10 8 14 14 H 1.07998 * 119.99966 * 359.97438 * 13 11 10 15 15 C 1.37878 * 120.00064 * 180.02562 * 13 11 10 16 16 N 1.31511 * 119.99697 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 119.99856 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47576 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47046 * 119.99929 * 17 15 13 20 20 H 1.48498 * 109.47240 * 239.99731 * 17 15 13 21 21 C 1.52999 * 109.47135 * 84.99801 * 11 10 8 22 22 C 1.52997 * 109.47317 * 295.00335 * 21 11 10 23 23 N 1.34405 * 108.45459 * 359.63686 * 7 6 5 24 24 N 1.28756 * 109.52066 * 0.22594 * 23 7 6 25 25 H 1.08003 * 120.00115 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99678 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99678 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47098 * 4.99483 * 3 2 1 29 29 H 1.09000 * 109.46763 * 244.99687 * 3 2 1 30 30 H 1.08999 * 109.47288 * 59.99865 * 4 3 2 31 31 H 1.09000 * 109.47210 * 299.99678 * 4 3 2 32 32 H 1.08006 * 126.57707 * 359.97432 * 6 5 4 33 33 H 0.96998 * 119.99765 * 0.02562 * 10 8 7 34 34 H 0.97005 * 119.99685 * 180.02562 * 16 15 13 35 35 H 1.08996 * 109.46929 * 174.99439 * 21 11 10 36 36 H 1.09002 * 109.46716 * 55.00244 * 21 11 10 37 37 H 1.09002 * 109.47153 * 299.99641 * 22 21 11 38 38 H 1.09001 * 109.46832 * 179.97438 * 22 21 11 39 39 H 1.09004 * 109.47261 * 59.99813 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7680 2.6016 1.1813 6 6 3.8537 3.4806 2.1997 7 6 4.6297 4.5168 1.7641 8 6 4.9917 5.7125 2.5487 9 8 4.5852 5.8382 3.6878 10 7 5.7728 6.6656 2.0030 11 6 6.1317 7.8533 2.7820 12 1 5.2970 8.1318 3.4253 13 6 6.4460 8.9919 1.8460 14 1 6.3849 8.8453 0.7778 15 6 6.8125 10.2204 2.3535 16 7 6.8874 10.3986 3.6543 17 14 7.2027 11.6314 1.1934 18 1 7.0458 11.1754 -0.2111 19 1 6.2725 12.7590 1.4550 20 1 8.6006 12.0815 1.4139 21 6 7.3590 7.5469 3.6427 22 6 7.0025 6.4771 4.6767 23 7 5.0127 4.2600 0.5016 24 7 4.5200 3.1322 0.1235 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 3.7400 0.5066 1.0922 31 1 2.4772 1.2357 2.1130 32 1 3.3947 3.3851 3.1728 33 1 6.0967 6.5656 1.0941 34 1 7.1449 11.2630 4.0114 35 1 7.6796 8.4544 4.1543 36 1 8.1667 7.1834 3.0074 37 1 6.1948 6.8406 5.3120 38 1 7.8771 6.2586 5.2896 39 1 6.6819 5.5696 4.1650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424786432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:11 Heat of formation + Delta-G solvation = 68.756422 kcal Electronic energy + Delta-G solvation = -21002.464054 eV Core-core repulsion = 17754.694054 eV Total energy + Delta-G solvation = -3247.769999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04537 -38.69859 -36.66243 -35.01045 -33.93292 -32.29167 -31.16088 -30.58510 -29.37150 -26.93131 -24.79682 -23.66781 -22.55649 -21.75392 -20.38264 -20.18678 -19.24718 -17.97801 -16.58965 -16.12413 -15.90441 -15.45277 -15.25373 -14.69179 -14.60009 -14.27765 -13.99622 -13.37516 -13.32870 -12.89756 -12.63569 -12.17073 -11.95209 -11.82326 -11.60341 -11.45875 -11.21344 -11.09731 -10.90056 -10.79628 -10.37283 -10.26425 -10.13155 -9.84806 -9.59680 -9.21271 -9.06934 -8.97740 -8.45056 -7.76475 -6.07255 -4.15550 1.23458 1.71856 2.06963 2.08706 3.28629 3.36458 3.40505 3.95440 3.97843 4.20822 4.28715 4.39812 4.47061 4.54948 4.74340 4.82143 5.03260 5.13986 5.24285 5.32434 5.37062 5.50089 5.56870 6.07550 6.12993 6.22999 6.39470 6.43967 6.51112 6.70525 7.10436 7.23349 7.40838 7.48281 7.67927 7.78427 7.94323 8.10696 8.22728 8.74006 8.82733 9.15078 9.51320 10.98306 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030582 B = 0.003334 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.338798 B = 8395.745456 C = 8891.469668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C -0.107 4.107 4 C 0.129 3.871 5 N -0.368 5.368 6 C 0.082 3.918 7 C -0.086 4.086 8 C 0.586 3.414 9 O -0.549 6.549 10 N -0.688 5.688 11 C 0.269 3.731 12 H 0.052 0.948 13 C -0.531 4.531 14 H 0.063 0.937 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.901 3.099 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.128 4.128 22 C -0.137 4.137 23 N -0.203 5.203 24 N -0.074 5.074 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.202 0.798 33 H 0.397 0.603 34 H 0.263 0.737 35 H 0.100 0.900 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.022 0.978 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.203 -19.633 -4.160 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.176 4.176 3 C -0.145 4.145 4 C 0.007 3.993 5 N -0.154 5.154 6 C -0.074 4.074 7 C -0.226 4.226 8 C 0.368 3.632 9 O -0.428 6.428 10 N -0.335 5.335 11 C 0.168 3.832 12 H 0.069 0.931 13 C -0.569 4.569 14 H 0.081 0.919 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.167 4.167 22 C -0.195 4.195 23 N -0.077 5.077 24 N -0.054 5.054 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.132 0.868 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.219 0.781 33 H 0.230 0.770 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.960 -19.591 -4.636 22.035 hybrid contribution -0.051 0.629 0.002 0.631 sum -9.011 -18.961 -4.634 21.499 Atomic orbital electron populations 1.23961 0.95905 1.02269 0.99737 1.22756 0.96008 0.97695 1.01141 1.21032 0.98074 0.96648 0.98754 1.21937 0.94339 0.81674 1.01306 1.50482 1.36312 1.17496 1.11083 1.23369 0.99126 0.89625 0.95247 1.22004 1.07023 1.00492 0.93089 1.16779 0.79820 0.81238 0.85365 1.90770 1.56139 1.78405 1.17448 1.46368 1.48186 1.21005 1.17923 1.18867 0.94133 0.79810 0.90415 0.93070 1.21291 1.47456 0.95056 0.93142 0.91871 1.24875 0.95006 0.98558 0.95255 1.69906 1.47287 1.23999 1.10925 0.86397 0.77921 0.81880 0.80956 1.19661 1.20943 1.20913 1.21941 0.98532 0.99252 0.96972 1.21843 0.99012 0.99384 0.99228 1.74660 1.15193 1.07175 1.10672 1.81908 1.09434 1.05459 1.08643 0.88080 0.88357 0.86770 0.90522 0.89038 0.88446 0.87747 0.78115 0.76988 0.92678 0.88159 0.94905 0.93076 0.95842 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.95 14.32 29.01 0.42 -0.54 16 2 C -0.16 -0.83 9.52 -36.02 -0.34 -1.18 16 3 C -0.11 -0.72 5.86 -27.88 -0.16 -0.88 16 4 C 0.13 0.87 6.52 -4.05 -0.03 0.84 16 5 N -0.37 -4.25 3.69 -61.07 -0.23 -4.48 16 6 C 0.08 1.08 11.27 -16.84 -0.19 0.89 16 7 C -0.09 -1.49 6.99 -83.55 -0.58 -2.08 16 8 C 0.59 12.22 6.39 -12.48 -0.08 12.14 16 9 O -0.55 -12.55 14.00 5.28 0.07 -12.48 16 10 N -0.69 -15.32 5.02 -55.98 -0.28 -15.60 16 11 C 0.27 6.92 2.24 -69.08 -0.15 6.76 16 12 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 13 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 14 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 15 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 16 N -0.88 -24.89 11.29 55.43 0.63 -24.27 16 17 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.13 -3.17 5.45 -26.73 -0.15 -3.32 16 22 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 23 N -0.20 -3.54 12.04 32.85 0.40 -3.15 16 24 N -0.07 -1.12 13.65 60.35 0.82 -0.30 16 25 H 0.10 0.42 8.06 -52.48 -0.42 -0.01 16 26 H 0.10 0.52 7.84 -52.48 -0.41 0.11 16 27 H 0.11 0.47 8.06 -52.48 -0.42 0.04 16 28 H 0.08 0.58 7.79 -51.93 -0.40 0.17 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.20 2.02 8.06 -52.48 -0.42 1.60 16 33 H 0.40 8.33 8.22 -40.82 -0.34 7.99 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 35 H 0.10 2.71 5.95 -51.93 -0.31 2.41 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -31.58 333.38 -5.41 -36.99 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.48 Total: 5.36 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.35 Total: -3.08 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 1.34 Total: -47.79 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.58 -5.41 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424786432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.746 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds