Wall clock time and date at job start Tue Mar 31 2020 00:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00074 * 2 1 4 4 C 1.52997 * 109.47226 * 124.99735 * 3 2 1 5 5 N 1.46497 * 109.47161 * 179.97438 * 4 3 2 6 6 C 1.34810 * 126.59806 * 125.26876 * 5 4 3 7 7 C 1.36593 * 106.84610 * 180.11010 * 6 5 4 8 8 C 1.47520 * 125.77505 * 179.90229 * 7 6 5 9 9 O 1.21600 * 120.00028 * 359.71212 * 8 7 6 10 10 N 1.34777 * 120.00087 * 179.71458 * 8 7 6 11 11 C 1.46501 * 120.00027 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47030 * 324.99761 * 11 10 8 13 13 C 1.50700 * 109.47229 * 205.00369 * 11 10 8 14 14 H 1.07998 * 119.99966 * 359.97438 * 13 11 10 15 15 C 1.37878 * 120.00064 * 180.02562 * 13 11 10 16 16 N 1.31511 * 119.99697 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 119.99856 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47576 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47046 * 119.99929 * 17 15 13 20 20 H 1.48498 * 109.47240 * 239.99731 * 17 15 13 21 21 C 1.52999 * 109.47135 * 84.99801 * 11 10 8 22 22 C 1.52997 * 109.47317 * 295.00335 * 21 11 10 23 23 N 1.34405 * 108.45459 * 359.63686 * 7 6 5 24 24 N 1.28756 * 109.52066 * 0.22594 * 23 7 6 25 25 H 1.08003 * 120.00115 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99678 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99678 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47098 * 4.99483 * 3 2 1 29 29 H 1.09000 * 109.46763 * 244.99687 * 3 2 1 30 30 H 1.08999 * 109.47288 * 59.99865 * 4 3 2 31 31 H 1.09000 * 109.47210 * 299.99678 * 4 3 2 32 32 H 1.08006 * 126.57707 * 359.97432 * 6 5 4 33 33 H 0.96998 * 119.99765 * 0.02562 * 10 8 7 34 34 H 0.97005 * 119.99685 * 180.02562 * 16 15 13 35 35 H 1.08996 * 109.46929 * 174.99439 * 21 11 10 36 36 H 1.09002 * 109.46716 * 55.00244 * 21 11 10 37 37 H 1.09002 * 109.47153 * 299.99641 * 22 21 11 38 38 H 1.09001 * 109.46832 * 179.97438 * 22 21 11 39 39 H 1.09004 * 109.47261 * 59.99813 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7680 2.6016 1.1813 6 6 3.8537 3.4806 2.1997 7 6 4.6297 4.5168 1.7641 8 6 4.9917 5.7125 2.5487 9 8 4.5852 5.8382 3.6878 10 7 5.7728 6.6656 2.0030 11 6 6.1317 7.8533 2.7820 12 1 5.2970 8.1318 3.4253 13 6 6.4460 8.9919 1.8460 14 1 6.3849 8.8453 0.7778 15 6 6.8125 10.2204 2.3535 16 7 6.8874 10.3986 3.6543 17 14 7.2027 11.6314 1.1934 18 1 7.0458 11.1754 -0.2111 19 1 6.2725 12.7590 1.4550 20 1 8.6006 12.0815 1.4139 21 6 7.3590 7.5469 3.6427 22 6 7.0025 6.4771 4.6767 23 7 5.0127 4.2600 0.5016 24 7 4.5200 3.1322 0.1235 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 3.7400 0.5066 1.0922 31 1 2.4772 1.2357 2.1130 32 1 3.3947 3.3851 3.1728 33 1 6.0967 6.5656 1.0941 34 1 7.1449 11.2630 4.0114 35 1 7.6796 8.4544 4.1543 36 1 8.1667 7.1834 3.0074 37 1 6.1948 6.8406 5.3120 38 1 7.8771 6.2586 5.2896 39 1 6.6819 5.5696 4.1650 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424786432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:11 Heat of formation + Delta-G solvation = 47.281382 kcal Electronic energy + Delta-G solvation = -21003.395281 eV Core-core repulsion = 17754.694054 eV Total energy + Delta-G solvation = -3248.701227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.19023 -40.40013 -37.30812 -36.91325 -34.77586 -34.20870 -32.89054 -31.82410 -30.26035 -28.86220 -25.60494 -25.34664 -24.22197 -22.73927 -21.88409 -21.02144 -20.74160 -19.43545 -18.08013 -17.26400 -17.12647 -17.00820 -16.35246 -16.10630 -16.00689 -15.64110 -15.03265 -14.90743 -14.57137 -14.00381 -13.77894 -13.64630 -13.43180 -13.16485 -13.09545 -12.87148 -12.68466 -12.62010 -12.15527 -12.14012 -12.03527 -12.00991 -11.56882 -11.29055 -11.03410 -10.92191 -10.52018 -10.34304 -10.23973 -9.61031 -8.15036 -6.31280 0.18097 0.71881 1.07715 1.42849 1.44519 1.45892 1.58069 2.35366 2.42848 2.58659 3.14239 3.28811 3.45441 3.79690 3.90168 4.03274 4.07298 4.24551 4.38015 4.41748 4.53498 4.61033 4.65858 4.78924 4.86820 4.99886 5.07893 5.10784 5.28975 5.46589 5.48529 5.56971 5.62601 5.73109 5.81574 5.84422 5.92024 6.18376 6.75029 6.80610 7.06277 7.32587 7.50105 8.90608 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030582 B = 0.003334 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.338798 B = 8395.745456 C = 8891.469668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.103 4.103 4 C 0.118 3.882 5 N -0.348 5.348 6 C 0.109 3.891 7 C -0.120 4.120 8 C 0.588 3.412 9 O -0.574 6.574 10 N -0.694 5.694 11 C 0.278 3.722 12 H 0.008 0.992 13 C -0.549 4.549 14 H 0.065 0.935 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.277 1.277 21 C -0.122 4.122 22 C -0.123 4.123 23 N -0.229 5.229 24 N -0.085 5.085 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.236 0.764 33 H 0.402 0.598 34 H 0.266 0.734 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 -21.593 -4.635 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C -0.141 4.141 4 C 0.000 4.000 5 N -0.133 5.133 6 C -0.049 4.049 7 C -0.260 4.260 8 C 0.373 3.627 9 O -0.454 6.454 10 N -0.341 5.341 11 C 0.175 3.825 12 H 0.026 0.974 13 C -0.588 4.588 14 H 0.083 0.917 15 C -0.182 4.182 16 N -0.550 5.550 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.202 1.202 21 C -0.161 4.161 22 C -0.180 4.180 23 N -0.102 5.102 24 N -0.066 5.066 25 H 0.132 0.868 26 H 0.111 0.889 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.252 0.748 33 H 0.236 0.764 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.529 -21.604 -5.145 24.166 hybrid contribution 0.004 1.097 0.150 1.107 sum -9.525 -20.507 -4.995 23.156 Atomic orbital electron populations 1.24104 0.96078 1.02713 0.99333 1.22761 0.95954 0.97438 1.01408 1.20960 0.97774 0.97282 0.98100 1.22498 0.94751 0.79842 1.02952 1.50799 1.34810 1.18147 1.09593 1.23770 0.96867 0.88039 0.96245 1.21573 1.10095 1.00687 0.93612 1.17132 0.78614 0.81691 0.85273 1.90743 1.56824 1.79194 1.18653 1.46179 1.49220 1.20700 1.17962 1.18481 0.92797 0.81079 0.90143 0.97376 1.21579 1.47751 0.95999 0.93425 0.91726 1.25705 0.94688 1.01004 0.96762 1.70034 1.47713 1.24688 1.12563 0.85349 0.77778 0.78478 0.79051 1.18996 1.20687 1.20246 1.21793 0.98159 0.98876 0.97260 1.21677 0.99339 0.98490 0.98542 1.74632 1.16298 1.08345 1.10954 1.81817 1.10000 1.04938 1.09813 0.86843 0.88859 0.85141 0.91563 0.90512 0.86282 0.84399 0.74781 0.76375 0.92484 0.90588 0.94550 0.94784 0.93454 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 14.32 67.78 0.97 -0.55 16 2 C -0.16 -1.24 9.52 25.65 0.24 -1.00 16 3 C -0.10 -1.15 5.86 29.85 0.17 -0.98 16 4 C 0.12 1.18 6.52 86.38 0.56 1.74 16 5 N -0.35 -7.16 3.69 -347.11 -1.28 -8.45 16 6 C 0.11 2.59 11.27 83.85 0.95 3.54 16 7 C -0.12 -4.07 6.99 40.81 0.29 -3.78 16 8 C 0.59 24.82 6.39 86.69 0.55 25.38 16 9 O -0.57 -26.56 14.00 -4.03 -0.06 -26.62 16 10 N -0.69 -31.66 5.02 -449.27 -2.25 -33.91 16 11 C 0.28 14.76 2.24 44.24 0.10 14.86 16 12 H 0.01 0.51 7.58 -2.38 -0.02 0.49 16 13 C -0.55 -30.33 8.73 25.60 0.22 -30.11 16 14 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 15 C 0.02 1.03 5.29 84.66 0.45 1.47 16 16 N -0.91 -52.47 11.29 21.45 0.24 -52.23 16 17 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 C -0.12 -6.17 5.45 30.59 0.17 -6.00 16 22 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 23 N -0.23 -7.88 12.04 -50.00 -0.60 -8.49 16 24 N -0.09 -2.46 13.65 37.02 0.51 -1.96 16 25 H 0.11 0.65 8.06 -2.91 -0.02 0.63 16 26 H 0.09 0.85 7.84 -2.91 -0.02 0.82 16 27 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 28 H 0.07 0.88 7.79 -2.39 -0.02 0.87 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.14 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.24 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.40 17.32 8.22 -92.71 -0.76 16.56 16 34 H 0.27 14.41 8.31 -92.70 -0.77 13.63 16 35 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.84 5.64 -2.38 -0.01 1.83 16 Total: -1.00 -70.15 333.38 4.16 -65.99 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.29 Total: 20.69 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.29 Total: -0.37 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.39 Total: -105.03 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.06 Total: -26.62 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.15 4.16 -65.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424786432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.272 kcal (2) G-P(sol) polarization free energy of solvation -70.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds