Wall clock time and date at job start Tue Mar 31 2020 00:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00345 * 2 1 4 4 C 1.53001 * 109.46873 * 124.99974 * 3 2 1 5 5 N 1.46505 * 109.46639 * 179.97438 * 4 3 2 6 6 C 1.34818 * 126.59402 * 125.24217 * 5 4 3 7 7 C 1.36596 * 106.83725 * 180.13100 * 6 5 4 8 8 C 1.47527 * 125.76558 * 179.90047 * 7 6 5 9 9 O 1.21591 * 120.00238 * 359.71324 * 8 7 6 10 10 N 1.34776 * 119.99702 * 179.71638 * 8 7 6 11 11 C 1.46502 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46581 * 35.00344 * 11 10 8 13 13 C 1.50700 * 109.46969 * 154.99546 * 11 10 8 14 14 H 1.07998 * 120.00370 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99824 * 180.02562 * 13 11 10 16 16 N 1.31523 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99983 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47402 * 60.00067 * 17 15 13 19 19 H 1.48504 * 109.47024 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46769 * 299.99484 * 17 15 13 21 21 C 1.52992 * 109.47005 * 275.00208 * 11 10 8 22 22 C 1.52997 * 109.47482 * 64.99872 * 21 11 10 23 23 N 1.34395 * 108.46211 * 359.63233 * 7 6 5 24 24 N 1.28763 * 109.52182 * 0.23168 * 23 7 6 25 25 H 1.08003 * 119.99770 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00406 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99770 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46673 * 4.99960 * 3 2 1 29 29 H 1.09005 * 109.47005 * 244.99760 * 3 2 1 30 30 H 1.08996 * 109.47483 * 60.00482 * 4 3 2 31 31 H 1.08997 * 109.46793 * 299.99627 * 4 3 2 32 32 H 1.08004 * 126.57795 * 359.97438 * 6 5 4 33 33 H 0.97001 * 120.00217 * 359.97438 * 10 8 7 34 34 H 0.96993 * 119.99651 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47103 * 304.99625 * 21 11 10 36 36 H 1.08998 * 109.46862 * 185.00437 * 21 11 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 22 21 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 22 21 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7681 2.6014 1.1813 6 6 3.8534 3.4807 2.1997 7 6 4.6293 4.5170 1.7638 8 6 4.9908 5.7129 2.5483 9 8 4.5841 5.8387 3.6873 10 7 5.7717 6.6662 2.0025 11 6 6.1302 7.8541 2.7812 12 1 6.2543 7.5781 3.8284 13 6 7.4212 8.4278 2.2566 14 1 7.9241 7.9552 1.4260 15 6 7.9603 9.5562 2.8372 16 7 7.3482 10.1316 3.8492 17 14 9.5602 10.2679 2.1865 18 1 9.3906 10.6445 0.7602 19 1 9.9243 11.4713 2.9769 20 1 10.6379 9.2533 2.3059 21 6 5.0199 8.8993 2.6574 22 6 3.7404 8.3632 3.3027 23 7 5.0126 4.2600 0.5015 24 7 4.5201 3.1320 0.1235 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 3.7400 0.5065 1.0921 31 1 2.4772 1.2355 2.1130 32 1 3.3941 3.3853 3.1725 33 1 6.0964 6.5657 1.0939 34 1 7.7277 10.9252 4.2578 35 1 4.8349 9.1098 1.6040 36 1 5.3254 9.8155 3.1626 37 1 3.9254 8.1528 4.3561 38 1 3.4350 7.4470 2.7973 39 1 2.9495 9.1081 3.2148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424786433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:14 Heat of formation + Delta-G solvation = 68.836662 kcal Electronic energy + Delta-G solvation = -21013.650022 eV Core-core repulsion = 17765.883502 eV Total energy + Delta-G solvation = -3247.766520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.04450 -38.69930 -36.66456 -35.00978 -33.93387 -32.28890 -31.16023 -30.58499 -29.37301 -26.92912 -24.79819 -23.66585 -22.55489 -21.75425 -20.38542 -20.18656 -19.24668 -17.97709 -16.59129 -16.13047 -15.89738 -15.43970 -15.25032 -14.75740 -14.53684 -14.24378 -14.06613 -13.41729 -13.23870 -12.93466 -12.62404 -12.15407 -11.99255 -11.80066 -11.60505 -11.45234 -11.20482 -11.09952 -10.92902 -10.76961 -10.37203 -10.28627 -10.12707 -9.85134 -9.59627 -9.21284 -9.06988 -8.99153 -8.44124 -7.76464 -6.06706 -4.15258 1.23452 1.71548 2.07071 2.08599 3.31503 3.35792 3.38187 3.95552 3.97724 4.20830 4.28447 4.39925 4.47031 4.54752 4.74091 4.82191 5.03248 5.13708 5.24544 5.32448 5.36787 5.49807 5.56602 6.07478 6.12736 6.22676 6.39424 6.43861 6.51096 6.70482 7.10394 7.23357 7.40836 7.48321 7.67827 7.78488 7.94421 8.10721 8.22867 8.74045 8.82592 9.15069 9.51484 10.98773 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035529 B = 0.003292 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.896972 B = 8502.915787 C = 8959.024399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C -0.107 4.107 4 C 0.129 3.871 5 N -0.368 5.368 6 C 0.082 3.918 7 C -0.086 4.086 8 C 0.586 3.414 9 O -0.549 6.549 10 N -0.688 5.688 11 C 0.270 3.730 12 H 0.051 0.949 13 C -0.533 4.533 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.128 4.128 22 C -0.137 4.137 23 N -0.204 5.204 24 N -0.074 5.074 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.202 0.798 33 H 0.397 0.603 34 H 0.264 0.736 35 H 0.032 0.968 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.038 0.962 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -18.169 -5.190 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.176 4.176 3 C -0.145 4.145 4 C 0.007 3.993 5 N -0.154 5.154 6 C -0.074 4.074 7 C -0.226 4.226 8 C 0.368 3.632 9 O -0.428 6.428 10 N -0.335 5.335 11 C 0.168 3.832 12 H 0.069 0.931 13 C -0.571 4.571 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.167 4.167 22 C -0.195 4.195 23 N -0.077 5.077 24 N -0.054 5.054 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.219 0.781 33 H 0.230 0.770 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.461 -18.108 -5.665 22.167 hybrid contribution 0.524 0.284 0.222 0.636 sum -10.938 -17.825 -5.443 21.610 Atomic orbital electron populations 1.23956 0.95903 1.02264 0.99757 1.22756 0.96009 0.97704 1.01121 1.21032 0.98064 0.96640 0.98761 1.21940 0.94339 0.81688 1.01296 1.50486 1.36302 1.17488 1.11097 1.23373 0.99158 0.89607 0.95232 1.22005 1.06978 1.00516 0.93107 1.16778 0.79873 0.81067 0.85481 1.90768 1.55715 1.78608 1.17664 1.46370 1.47950 1.21093 1.18077 1.18854 0.92422 0.79344 0.92531 0.93075 1.21215 1.06498 1.11657 1.17733 0.91975 1.24873 0.97617 0.96376 0.94770 1.69887 1.38904 1.20819 1.22523 0.86507 0.83289 0.78410 0.78901 1.20125 1.21198 1.20194 1.21939 0.93639 1.02515 0.98588 1.21844 0.97765 0.98632 1.01238 1.74657 1.15119 1.07205 1.10720 1.81910 1.09442 1.05452 1.08645 0.88367 0.88078 0.86764 0.90540 0.89039 0.88433 0.87744 0.78112 0.76993 0.92561 0.94903 0.88174 0.93079 0.94338 0.95843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 14.32 29.02 0.42 -0.53 16 2 C -0.16 -0.83 9.52 -36.02 -0.34 -1.17 16 3 C -0.11 -0.71 5.86 -27.88 -0.16 -0.88 16 4 C 0.13 0.87 6.52 -4.04 -0.03 0.84 16 5 N -0.37 -4.25 3.69 -61.06 -0.23 -4.48 16 6 C 0.08 1.08 11.27 -16.83 -0.19 0.89 16 7 C -0.09 -1.49 6.99 -83.55 -0.58 -2.08 16 8 C 0.59 12.23 6.38 -12.47 -0.08 12.15 16 9 O -0.55 -12.56 14.00 5.29 0.07 -12.48 16 10 N -0.69 -15.33 5.02 -55.98 -0.28 -15.61 16 11 C 0.27 6.94 2.24 -69.08 -0.15 6.79 16 12 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 13 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 15 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 16 N -0.88 -24.91 11.30 55.43 0.63 -24.28 16 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.13 -3.17 5.45 -26.74 -0.15 -3.31 16 22 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 23 N -0.20 -3.54 12.04 32.85 0.40 -3.15 16 24 N -0.07 -1.12 13.65 60.35 0.82 -0.30 16 25 H 0.10 0.52 7.84 -52.48 -0.41 0.10 16 26 H 0.10 0.41 8.06 -52.49 -0.42 -0.01 16 27 H 0.11 0.46 8.06 -52.48 -0.42 0.04 16 28 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.20 2.03 8.06 -52.48 -0.42 1.60 16 33 H 0.40 8.33 8.23 -40.82 -0.34 7.99 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 37 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 38 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -31.55 333.39 -5.41 -36.96 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.48 Total: 5.39 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.35 Total: -3.06 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 1.34 Total: -47.81 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.55 -5.41 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424786433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.792 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds