Wall clock time and date at job start Tue Mar 31 2020 00:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 120.00345 * 2 1 4 4 C 1.53001 * 109.46873 * 124.99974 * 3 2 1 5 5 N 1.46505 * 109.46639 * 179.97438 * 4 3 2 6 6 C 1.34818 * 126.59402 * 125.24217 * 5 4 3 7 7 C 1.36596 * 106.83725 * 180.13100 * 6 5 4 8 8 C 1.47527 * 125.76558 * 179.90047 * 7 6 5 9 9 O 1.21591 * 120.00238 * 359.71324 * 8 7 6 10 10 N 1.34776 * 119.99702 * 179.71638 * 8 7 6 11 11 C 1.46502 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46581 * 35.00344 * 11 10 8 13 13 C 1.50700 * 109.46969 * 154.99546 * 11 10 8 14 14 H 1.07998 * 120.00370 * 0.02562 * 13 11 10 15 15 C 1.37878 * 119.99824 * 180.02562 * 13 11 10 16 16 N 1.31523 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99983 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47402 * 60.00067 * 17 15 13 19 19 H 1.48504 * 109.47024 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46769 * 299.99484 * 17 15 13 21 21 C 1.52992 * 109.47005 * 275.00208 * 11 10 8 22 22 C 1.52997 * 109.47482 * 64.99872 * 21 11 10 23 23 N 1.34395 * 108.46211 * 359.63233 * 7 6 5 24 24 N 1.28763 * 109.52182 * 0.23168 * 23 7 6 25 25 H 1.08003 * 119.99770 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00406 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99770 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46673 * 4.99960 * 3 2 1 29 29 H 1.09005 * 109.47005 * 244.99760 * 3 2 1 30 30 H 1.08996 * 109.47483 * 60.00482 * 4 3 2 31 31 H 1.08997 * 109.46793 * 299.99627 * 4 3 2 32 32 H 1.08004 * 126.57795 * 359.97438 * 6 5 4 33 33 H 0.97001 * 120.00217 * 359.97438 * 10 8 7 34 34 H 0.96993 * 119.99651 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47103 * 304.99625 * 21 11 10 36 36 H 1.08998 * 109.46862 * 185.00437 * 21 11 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 22 21 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 22 21 11 39 39 H 1.09004 * 109.47261 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 7 3.7681 2.6014 1.1813 6 6 3.8534 3.4807 2.1997 7 6 4.6293 4.5170 1.7638 8 6 4.9908 5.7129 2.5483 9 8 4.5841 5.8387 3.6873 10 7 5.7717 6.6662 2.0025 11 6 6.1302 7.8541 2.7812 12 1 6.2543 7.5781 3.8284 13 6 7.4212 8.4278 2.2566 14 1 7.9241 7.9552 1.4260 15 6 7.9603 9.5562 2.8372 16 7 7.3482 10.1316 3.8492 17 14 9.5602 10.2679 2.1865 18 1 9.3906 10.6445 0.7602 19 1 9.9243 11.4713 2.9769 20 1 10.6379 9.2533 2.3059 21 6 5.0199 8.8993 2.6574 22 6 3.7404 8.3632 3.3027 23 7 5.0126 4.2600 0.5015 24 7 4.5201 3.1320 0.1235 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4025 -0.9314 30 1 3.7400 0.5065 1.0921 31 1 2.4772 1.2355 2.1130 32 1 3.3941 3.3853 3.1725 33 1 6.0964 6.5657 1.0939 34 1 7.7277 10.9252 4.2578 35 1 4.8349 9.1098 1.6040 36 1 5.3254 9.8155 3.1626 37 1 3.9254 8.1528 4.3561 38 1 3.4350 7.4470 2.7973 39 1 2.9495 9.1081 3.2148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424786433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:13 Heat of formation + Delta-G solvation = 47.396532 kcal Electronic energy + Delta-G solvation = -21014.579735 eV Core-core repulsion = 17765.883502 eV Total energy + Delta-G solvation = -3248.696234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.18962 -40.40124 -37.30702 -36.91298 -34.77469 -34.20603 -32.89127 -31.82386 -30.25984 -28.85977 -25.60289 -25.34507 -24.22173 -22.73939 -21.88407 -21.02182 -20.73965 -19.43290 -18.08005 -17.27329 -17.10879 -17.00042 -16.35387 -16.09979 -16.03861 -15.60868 -15.10972 -14.84460 -14.56451 -13.98047 -13.81069 -13.63878 -13.43617 -13.15465 -13.08067 -12.90239 -12.65609 -12.60859 -12.16869 -12.16419 -12.02360 -12.00973 -11.56747 -11.29079 -11.05358 -10.92010 -10.50814 -10.34241 -10.23943 -9.61081 -8.14485 -6.31013 0.18075 0.71899 1.07652 1.43051 1.45874 1.47684 1.55427 2.35464 2.42840 2.58843 3.14561 3.28811 3.45512 3.79818 3.90193 4.03262 4.07387 4.24653 4.38078 4.41840 4.53249 4.60799 4.65903 4.78780 4.86863 5.00015 5.08131 5.10626 5.28746 5.46398 5.48470 5.56898 5.62361 5.73379 5.81534 5.84542 5.92175 6.18314 6.74787 6.80647 7.06309 7.32674 7.50193 8.90743 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035529 B = 0.003292 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.896972 B = 8502.915787 C = 8959.024399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.103 4.103 4 C 0.118 3.882 5 N -0.348 5.348 6 C 0.108 3.892 7 C -0.120 4.120 8 C 0.588 3.412 9 O -0.574 6.574 10 N -0.694 5.694 11 C 0.279 3.721 12 H 0.008 0.992 13 C -0.552 4.552 14 H 0.065 0.935 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.273 1.273 21 C -0.122 4.122 22 C -0.123 4.123 23 N -0.229 5.229 24 N -0.085 5.085 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.236 0.764 33 H 0.402 0.598 34 H 0.266 0.734 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 -20.014 -5.759 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.176 4.176 3 C -0.141 4.141 4 C -0.001 4.001 5 N -0.133 5.133 6 C -0.049 4.049 7 C -0.260 4.260 8 C 0.373 3.627 9 O -0.454 6.454 10 N -0.341 5.341 11 C 0.176 3.824 12 H 0.026 0.974 13 C -0.590 4.590 14 H 0.083 0.917 15 C -0.181 4.181 16 N -0.550 5.550 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.161 4.161 22 C -0.181 4.181 23 N -0.102 5.102 24 N -0.066 5.066 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.148 0.852 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.156 0.844 32 H 0.252 0.748 33 H 0.236 0.764 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.218 -20.005 -6.271 24.265 hybrid contribution 0.647 0.706 0.403 1.039 sum -11.571 -19.300 -5.868 23.255 Atomic orbital electron populations 1.24101 0.96059 1.02728 0.99298 1.22758 0.95969 0.97438 1.01441 1.20958 0.97758 0.97292 0.98060 1.22501 0.94746 0.79829 1.02989 1.50802 1.34799 1.18136 1.09609 1.23774 0.96913 0.88023 0.96220 1.21574 1.10034 1.00724 0.93632 1.17131 0.78685 0.81532 0.85361 1.90741 1.56473 1.79376 1.18821 1.46180 1.48915 1.20888 1.18085 1.18468 0.92731 0.80660 0.90578 0.97385 1.21525 1.07337 1.12116 1.18003 0.91697 1.25708 1.00867 0.96652 0.94885 1.70022 1.40342 1.21120 1.23486 0.85458 0.79083 0.77602 0.78555 1.19229 1.20765 1.19809 1.21790 0.94434 1.01293 0.98542 1.21679 0.97283 0.99320 0.99788 1.74630 1.16204 1.08380 1.11009 1.81819 1.10007 1.04929 1.09819 0.88801 0.86867 0.85207 0.91474 0.90518 0.86366 0.84391 0.74782 0.76371 0.92467 0.94569 0.90594 0.94776 0.93992 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 14.32 67.78 0.97 -0.51 16 2 C -0.16 -1.23 9.52 25.65 0.24 -0.99 16 3 C -0.10 -1.13 5.86 29.85 0.17 -0.96 16 4 C 0.12 1.18 6.52 86.38 0.56 1.74 16 5 N -0.35 -7.17 3.69 -347.09 -1.28 -8.45 16 6 C 0.11 2.59 11.27 83.85 0.95 3.54 16 7 C -0.12 -4.07 6.99 40.82 0.29 -3.78 16 8 C 0.59 24.83 6.38 86.69 0.55 25.39 16 9 O -0.57 -26.57 14.00 -4.00 -0.06 -26.63 16 10 N -0.69 -31.67 5.02 -449.29 -2.25 -33.92 16 11 C 0.28 14.80 2.24 44.24 0.10 14.90 16 12 H 0.01 0.51 7.58 -2.39 -0.02 0.49 16 13 C -0.55 -30.46 8.73 25.60 0.22 -30.23 16 14 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.02 1.06 5.29 84.65 0.45 1.51 16 16 N -0.91 -52.50 11.30 21.45 0.24 -52.26 16 17 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16 22 C -0.12 -5.58 8.51 71.98 0.61 -4.97 16 23 N -0.23 -7.88 12.04 -49.99 -0.60 -8.48 16 24 N -0.09 -2.46 13.65 37.02 0.51 -1.96 16 25 H 0.09 0.82 7.84 -2.91 -0.02 0.80 16 26 H 0.11 0.64 8.06 -2.91 -0.02 0.61 16 27 H 0.13 0.62 8.06 -2.91 -0.02 0.60 16 28 H 0.07 0.87 7.79 -2.39 -0.02 0.85 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.14 0.56 8.08 -2.39 -0.02 0.54 16 32 H 0.24 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.40 17.31 8.23 -92.71 -0.76 16.55 16 34 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 4.23 5.95 -2.39 -0.01 4.22 16 37 H 0.03 1.62 7.84 -2.39 -0.02 1.60 16 38 H 0.04 1.84 5.64 -2.39 -0.01 1.83 16 39 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -70.06 333.39 4.16 -65.90 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.29 Total: 20.85 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.29 Total: -0.36 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.39 Total: -105.07 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.06 Total: -26.63 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.06 4.16 -65.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424786433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.298 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds