Wall clock time and date at job start Tue Mar 31 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46826 * 2 1 4 4 N 1.46504 * 109.46805 * 182.40422 * 3 2 1 5 5 C 1.37096 * 119.99871 * 267.88111 * 4 3 2 6 6 H 1.07995 * 119.99926 * 186.19695 * 5 4 3 7 7 C 1.38952 * 119.99951 * 6.19893 * 5 4 3 8 8 N 1.31410 * 120.00366 * 20.75742 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 200.75238 * 7 5 4 10 10 H 1.48506 * 109.46802 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47326 * 119.99773 * 9 7 5 12 12 H 1.48499 * 109.47535 * 240.00367 * 9 7 5 13 13 C 1.34776 * 119.99870 * 87.88249 * 4 3 2 14 14 O 1.21294 * 120.00014 * 3.72181 * 13 4 3 15 15 C 1.50705 * 119.99736 * 183.72495 * 13 4 3 16 16 H 1.08994 * 109.45213 * 31.06993 * 15 13 4 17 17 C 1.53221 * 109.43471 * 150.99310 * 15 13 4 18 18 C 1.53459 * 109.26692 * 189.43331 * 17 15 13 19 19 C 1.50795 * 108.17670 * 311.33430 * 18 17 15 20 20 N 1.29840 * 128.52935 * 195.88033 * 19 18 17 21 21 N 1.28909 * 109.48373 * 179.86844 * 20 19 18 22 22 C 1.30843 * 109.73761 * 0.03633 * 21 20 19 23 23 N 1.34699 * 107.07187 * 0.03436 * 22 21 20 24 24 C 1.46255 * 128.84635 * 179.83210 * 23 22 21 25 25 H 1.09006 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46739 * 299.99661 * 1 2 3 27 27 H 1.08995 * 109.47637 * 59.99708 * 1 2 3 28 28 H 1.08994 * 109.47050 * 240.00232 * 2 1 3 29 29 H 1.09000 * 109.47235 * 120.00071 * 2 1 3 30 30 H 1.09000 * 109.46800 * 62.40332 * 3 2 1 31 31 H 1.08992 * 109.47037 * 302.40304 * 3 2 1 32 32 H 0.96999 * 120.00654 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.49186 * 69.50749 * 17 15 13 34 34 H 1.09002 * 109.53039 * 309.38824 * 17 15 13 35 35 H 1.09005 * 109.72667 * 191.64980 * 18 17 15 36 36 H 1.09005 * 109.73072 * 71.01933 * 18 17 15 37 37 H 1.07996 * 126.45963 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.59326 * 316.90190 * 24 23 22 39 39 H 1.09002 * 109.59066 * 77.35061 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5039 1.4430 -0.0579 5 6 4.2357 1.4705 1.1010 6 1 5.3101 1.5718 1.0589 7 6 3.5951 1.3680 2.3298 8 7 2.3903 0.8482 2.4014 9 14 4.4467 1.9689 3.8800 10 1 5.7859 2.5081 3.5318 11 1 3.6315 3.0386 4.5096 12 1 4.5996 0.8386 4.8308 13 6 4.1310 1.4164 -1.2506 14 8 3.4854 1.4603 -2.2764 15 6 5.6346 1.3320 -1.3095 16 1 6.0008 0.7737 -0.4480 17 6 6.0549 0.6159 -2.5972 18 6 7.5601 0.3216 -2.5447 19 6 8.2728 1.5866 -2.1373 20 7 9.5356 1.8716 -2.2375 21 7 9.7464 3.0577 -1.7788 22 6 8.6195 3.5782 -1.3651 23 7 7.6574 2.6602 -1.5800 24 6 6.2264 2.7462 -1.2907 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7122 1.9438 0.9108 31 1 1.6419 1.9686 -0.8676 32 1 1.9430 0.7770 3.2592 33 1 5.8384 1.2528 -3.4548 34 1 5.5041 -0.3201 -2.6901 35 1 7.9074 0.0039 -3.5279 36 1 7.7564 -0.4630 -1.8140 37 1 8.4860 4.5588 -0.9327 38 1 6.0784 3.1914 -0.3068 39 1 5.7364 3.3577 -2.0484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431391861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:33 Heat of formation + Delta-G solvation = 33.541625 kcal Electronic energy + Delta-G solvation = -22487.439867 eV Core-core repulsion = 19238.142840 eV Total energy + Delta-G solvation = -3249.297027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -44.27568 -40.87438 -38.02500 -36.91948 -34.59427 -34.11116 -33.41660 -31.90693 -30.13621 -27.70895 -26.68962 -25.51869 -24.09894 -23.24303 -22.32216 -21.20337 -20.49392 -18.84998 -18.13973 -17.95987 -17.23909 -16.41092 -16.22431 -16.07569 -15.47147 -15.42793 -15.20887 -15.09947 -14.69818 -14.61871 -13.88101 -13.52989 -13.17912 -13.15655 -13.00196 -12.71890 -12.59088 -12.47485 -12.30599 -12.08715 -12.06280 -12.02206 -11.84468 -11.39529 -11.38453 -11.10294 -10.74223 -10.32113 -10.17912 -9.72950 -8.26031 -5.84310 0.88524 1.35978 1.49457 1.52453 1.59334 1.83452 1.97393 2.26870 2.85480 3.07586 3.23124 3.57466 3.60626 3.75044 3.89389 4.11258 4.21818 4.32473 4.35539 4.47379 4.52254 4.57153 4.68423 4.71647 4.77730 4.92515 5.01202 5.02906 5.12611 5.12766 5.24638 5.26073 5.33089 5.42305 5.60459 5.79939 5.90859 5.92963 6.48233 7.12236 7.58579 7.69126 7.98833 8.68232 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.006281 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.586854 B = 4456.917213 C = 5598.918599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C 0.139 3.861 4 N -0.441 5.441 5 C -0.356 4.356 6 H 0.111 0.889 7 C 0.005 3.995 8 N -0.867 5.867 9 Si 0.977 3.023 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.286 1.286 13 C 0.448 3.552 14 O -0.635 6.635 15 C -0.098 4.098 16 H 0.098 0.902 17 C -0.095 4.095 18 C -0.026 4.026 19 C 0.177 3.823 20 N -0.332 5.332 21 N -0.345 5.345 22 C 0.164 3.836 23 N -0.468 5.468 24 C 0.127 3.873 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.013 0.987 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.271 0.729 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.257 0.743 38 H 0.114 0.886 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 1.661 -1.491 3.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.147 4.147 3 C 0.016 3.984 4 N -0.156 5.156 5 C -0.483 4.483 6 H 0.129 0.871 7 C -0.199 4.199 8 N -0.504 5.504 9 Si 0.802 3.198 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.212 1.212 13 C 0.236 3.764 14 O -0.524 6.524 15 C -0.120 4.120 16 H 0.116 0.884 17 C -0.134 4.134 18 C -0.066 4.066 19 C -0.092 4.092 20 N -0.171 5.171 21 N -0.184 5.184 22 C -0.124 4.124 23 N -0.158 5.158 24 C 0.004 3.996 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.273 0.727 38 H 0.132 0.868 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.620 1.540 -2.091 4.455 hybrid contribution -1.266 0.408 1.263 1.834 sum 2.353 1.948 -0.828 3.165 Atomic orbital electron populations 1.21512 0.94991 1.01226 1.00872 1.21660 0.96055 0.97061 0.99900 1.21346 0.79950 0.97515 0.99623 1.44115 1.06131 1.60243 1.05161 1.19991 0.93162 1.51911 0.83185 0.87113 1.25890 0.96912 0.95594 1.01485 1.70221 1.14990 1.38597 1.26601 0.85114 0.78778 0.77869 0.78059 1.18535 1.20634 1.21227 1.20047 0.89603 0.83707 0.83037 1.90533 1.68263 1.58920 1.34690 1.21317 0.92916 0.96396 1.01326 0.88369 1.21444 0.94304 1.01733 0.95904 1.20360 0.91885 0.89549 1.04777 1.25263 0.90191 0.93769 1.00008 1.73939 1.13453 1.08879 1.20871 1.74351 1.23757 1.03501 1.16798 1.26995 0.83507 0.99116 1.02823 1.46325 1.10478 1.13674 1.45279 1.21884 0.75038 0.98153 1.04511 0.92423 0.92815 0.93603 0.96770 0.90274 0.89155 0.95410 0.91841 0.91313 0.89754 0.86290 0.87384 0.72700 0.86764 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 9.91 71.98 0.71 -3.74 16 2 C -0.11 -4.60 5.73 30.60 0.18 -4.42 16 3 C 0.14 6.22 4.62 86.38 0.40 6.62 16 4 N -0.44 -19.60 2.63 -635.52 -1.67 -21.27 16 5 C -0.36 -15.40 9.10 84.04 0.76 -14.64 16 6 H 0.11 4.44 5.57 -2.91 -0.02 4.42 16 7 C 0.01 0.23 5.05 84.93 0.43 0.65 16 8 N -0.87 -39.07 8.09 21.66 0.18 -38.90 16 9 Si 0.98 35.19 29.60 68.60 2.03 37.22 16 10 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 11 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 12 H -0.29 -10.54 7.11 99.48 0.71 -9.84 16 13 C 0.45 18.75 6.66 87.66 0.58 19.33 16 14 O -0.63 -30.17 15.92 -3.07 -0.05 -30.22 16 15 C -0.10 -3.19 1.69 -11.36 -0.02 -3.21 16 16 H 0.10 3.29 6.47 -2.39 -0.02 3.28 16 17 C -0.10 -2.72 4.71 30.82 0.15 -2.58 16 18 C -0.03 -0.65 6.33 30.03 0.19 -0.46 16 19 C 0.18 5.35 7.75 138.13 1.07 6.42 16 20 N -0.33 -11.57 12.21 -50.28 -0.61 -12.19 16 21 N -0.35 -11.59 12.23 -60.31 -0.74 -12.33 16 22 C 0.16 4.34 12.83 180.27 2.31 6.65 16 23 N -0.47 -13.16 3.11 -519.40 -1.62 -14.77 16 24 C 0.13 3.56 6.23 86.53 0.54 4.10 16 25 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 3.67 6.16 -2.39 -0.01 3.65 16 30 H 0.09 4.22 5.81 -2.39 -0.01 4.21 16 31 H 0.03 1.27 7.44 -2.39 -0.02 1.26 16 32 H 0.27 11.66 8.31 -92.71 -0.77 10.89 16 33 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 34 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 35 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.26 4.17 8.06 -2.91 -0.02 4.14 16 38 H 0.11 3.04 7.65 -2.39 -0.02 3.03 16 39 H 0.10 2.65 8.12 -2.39 -0.02 2.63 16 Total: -1.00 -58.81 314.39 5.88 -52.93 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.06 Total: 24.79 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.30 Total: 14.73 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -4.46 Total: -99.46 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.22 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Total: -58.81 5.88 -52.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431391861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.469 kcal (2) G-P(sol) polarization free energy of solvation -58.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds