Wall clock time and date at job start Tue Mar 31 2020 00:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 120.00178 * 2 1 4 4 C 1.53002 * 109.47349 * 94.99386 * 3 2 1 5 5 C 1.50701 * 120.00283 * 179.97438 * 2 1 3 6 6 N 1.46495 * 109.46728 * 94.99967 * 5 2 1 7 7 C 1.34777 * 119.99663 * 179.97438 * 6 5 2 8 8 O 1.21843 * 120.00114 * 0.02562 * 7 6 5 9 9 N 1.33832 * 120.00147 * 180.27726 * 7 6 5 10 10 C 1.32931 * 120.00335 * 179.72624 * 9 7 6 11 11 C 1.41206 * 126.38025 * 0.02599 * 10 9 7 12 12 C 1.34956 * 108.25105 * 179.97438 * 11 10 9 13 13 N 1.36454 * 108.94396 * 359.97438 * 12 11 10 14 14 C 1.46497 * 125.85130 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46839 * 84.98263 * 14 13 12 16 16 H 1.07998 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00297 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00421 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99740 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47026 * 90.00018 * 19 17 15 21 21 H 1.48498 * 109.46944 * 210.00034 * 19 17 15 22 22 H 1.48497 * 109.46902 * 329.99594 * 19 17 15 23 23 N 1.37423 * 126.38130 * 179.71062 * 10 9 7 24 24 H 0.97004 * 126.36573 * 0.03671 * 23 10 9 25 25 H 1.08009 * 119.99586 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00017 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47403 * 214.99960 * 3 2 1 28 28 H 1.09007 * 109.46719 * 334.99873 * 3 2 1 29 29 H 1.09000 * 109.46987 * 300.00850 * 4 3 2 30 30 H 1.09005 * 109.46610 * 60.00038 * 4 3 2 31 31 H 1.08996 * 109.47274 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.46569 * 335.00235 * 5 2 1 33 33 H 1.08997 * 109.47052 * 215.00481 * 5 2 1 34 34 H 0.97000 * 120.00601 * 0.02562 * 6 5 2 35 35 H 1.08006 * 125.87181 * 359.92613 * 11 10 9 36 36 H 1.07998 * 125.52710 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47563 * 204.97521 * 14 13 12 38 38 H 1.08996 * 109.47475 * 324.98421 * 14 13 12 39 39 H 0.97005 * 120.00376 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.4274 1.6841 1.4370 5 6 2.0636 -1.3051 0.0006 6 7 2.4119 -1.6683 -1.3752 7 6 3.0936 -2.8049 -1.6200 8 8 3.4196 -3.5306 -0.6971 9 7 3.4167 -3.1341 -2.8763 10 6 4.0938 -4.2524 -3.1173 11 6 4.5372 -5.1866 -2.1559 12 6 5.1837 -6.1811 -2.7997 13 7 5.1725 -5.9222 -4.1394 14 6 5.7706 -6.7616 -5.1805 15 6 4.7959 -7.8401 -5.5777 16 1 3.8280 -7.8951 -5.1019 17 6 5.1399 -8.7567 -6.5485 18 7 4.2895 -9.6982 -6.8948 19 14 6.8144 -8.6621 -7.3710 20 1 7.7890 -9.4799 -6.6051 21 1 6.7145 -9.1818 -8.7585 22 1 7.2709 -7.2494 -7.4033 23 7 4.4872 -4.7177 -4.3491 24 1 4.3229 -4.2908 -5.2045 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.9742 1.1989 -0.5894 28 1 1.4386 2.0855 -0.4344 29 1 1.5166 1.7902 2.0264 30 1 3.0523 0.9037 1.8714 31 1 2.9720 2.6282 1.4370 32 1 1.4385 -2.0852 0.4352 33 1 2.9742 -1.1985 0.5900 34 1 2.1527 -1.0905 -2.1099 35 1 4.3858 -5.1169 -1.0888 36 1 5.6358 -7.0425 -2.3307 37 1 6.0080 -6.1484 -6.0498 38 1 6.6831 -7.2193 -4.7985 39 1 4.5313 -10.3429 -7.5781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454839649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:45 Heat of formation + Delta-G solvation = 86.162076 kcal Electronic energy + Delta-G solvation = -20465.157396 eV Core-core repulsion = 17218.142163 eV Total energy + Delta-G solvation = -3247.015234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -40.81805 -38.95951 -36.95906 -34.36031 -33.33714 -32.85658 -31.07091 -31.02078 -30.42189 -27.33083 -25.89221 -23.72781 -22.81510 -21.62215 -21.24385 -19.75772 -18.72983 -17.41415 -17.23298 -16.20930 -15.66021 -15.38197 -15.05485 -14.91378 -14.67008 -14.27585 -13.95509 -13.77482 -13.28019 -13.21338 -12.88731 -12.80664 -12.65713 -12.35750 -12.28067 -11.90835 -11.48906 -11.08357 -11.03112 -10.86405 -10.67829 -10.05360 -9.81747 -9.64447 -9.36581 -9.06010 -9.03759 -8.56495 -8.36489 -6.84332 -6.50721 -4.59117 1.73897 1.88765 2.07451 2.96936 3.01427 3.07793 3.14319 3.81310 3.98115 4.42430 4.59013 4.63814 4.71463 4.77953 5.05898 5.18967 5.22639 5.39387 5.52690 5.65326 5.69916 5.76360 5.78238 5.83134 5.93069 6.01861 6.07642 6.18145 6.36036 6.41958 6.66438 6.69666 6.94705 7.06777 7.34849 7.56637 7.75824 8.02520 8.30949 8.45033 8.53505 9.01728 9.61794 10.60828 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047826 B = 0.002713 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.315136 B =10318.316930 C =10396.724628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.138 4.138 3 C -0.090 4.090 4 C -0.147 4.147 5 C 0.175 3.825 6 N -0.726 5.726 7 C 0.685 3.315 8 O -0.632 6.632 9 N -0.711 5.711 10 C 0.489 3.511 11 C -0.330 4.330 12 C 0.164 3.836 13 N -0.347 5.347 14 C 0.230 3.770 15 C -0.564 4.564 16 H 0.085 0.915 17 C 0.083 3.917 18 N -0.877 5.877 19 Si 0.875 3.125 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.265 1.265 23 N -0.471 5.471 24 H 0.445 0.555 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 15.820 9.204 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.127 4.127 4 C -0.204 4.204 5 C 0.051 3.949 6 N -0.380 5.380 7 C 0.384 3.616 8 O -0.514 6.514 9 N -0.475 5.475 10 C 0.235 3.765 11 C -0.362 4.362 12 C 0.020 3.980 13 N -0.133 5.133 14 C 0.112 3.888 15 C -0.602 4.602 16 H 0.103 0.897 17 C -0.124 4.124 18 N -0.512 5.512 19 Si 0.700 3.300 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.190 1.190 23 N -0.194 5.194 24 H 0.292 0.708 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.201 0.799 36 H 0.205 0.795 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.326 15.560 8.850 17.904 hybrid contribution 0.612 -0.134 -0.868 1.071 sum 0.286 15.427 7.981 17.371 Atomic orbital electron populations 1.23842 0.95182 1.02092 0.99644 1.21876 0.95419 0.95470 1.01065 1.20609 1.00263 0.94055 0.97779 1.21729 1.01493 1.01224 0.95942 1.19991 0.98518 0.92427 0.84006 1.44685 1.61161 1.24549 1.07631 1.16621 0.78540 0.81158 0.85300 1.90730 1.59608 1.52265 1.48815 1.68045 1.35442 1.21135 1.22870 1.18694 0.85663 0.89129 0.82979 1.22423 1.13473 0.97808 1.02540 1.22803 0.95255 0.98430 0.81507 1.47406 1.46772 1.11636 1.07462 1.20299 0.94309 0.89126 0.85105 1.21271 1.03246 1.11920 1.23767 0.89663 1.24835 0.97331 0.94482 0.95707 1.69859 1.35389 1.15614 1.30347 0.86887 0.83971 0.79164 0.79951 1.19355 1.20321 1.18951 1.44358 1.52010 1.14513 1.08542 0.70844 0.88252 0.88127 0.91002 0.91406 0.92707 0.92377 0.92605 0.91778 0.91758 0.76949 0.79860 0.79500 0.93419 0.92230 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 13.88 29.01 0.40 -1.14 16 2 C -0.14 -1.40 4.67 -101.06 -0.47 -1.87 16 3 C -0.09 -0.78 6.10 -27.88 -0.17 -0.95 16 4 C -0.15 -1.14 9.90 37.16 0.37 -0.77 16 5 C 0.18 2.33 5.83 -5.20 -0.03 2.29 16 6 N -0.73 -11.39 5.55 -66.62 -0.37 -11.76 16 7 C 0.68 13.64 8.47 -87.76 -0.74 12.89 16 8 O -0.63 -13.94 13.26 5.06 0.07 -13.87 16 9 N -0.71 -14.21 10.59 -15.79 -0.17 -14.38 16 10 C 0.49 9.59 8.07 -155.29 -1.25 8.33 16 11 C -0.33 -6.21 9.52 -39.62 -0.38 -6.58 16 12 C 0.16 2.75 11.45 -16.66 -0.19 2.56 16 13 N -0.35 -6.33 3.63 -62.25 -0.23 -6.55 16 14 C 0.23 4.44 5.26 -5.20 -0.03 4.41 16 15 C -0.56 -13.76 9.94 -34.44 -0.34 -14.10 16 16 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 17 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 18 N -0.88 -24.08 13.96 55.43 0.77 -23.31 16 19 Si 0.87 17.96 27.47 -169.99 -4.67 13.29 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.26 -5.06 6.54 56.52 0.37 -4.69 16 23 N -0.47 -8.37 7.38 31.33 0.23 -8.14 16 24 H 0.44 6.90 8.96 -182.54 -1.64 5.26 16 25 H 0.10 0.74 7.99 -52.48 -0.42 0.32 16 26 H 0.10 0.94 7.99 -52.49 -0.42 0.52 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.51 7.99 -51.93 -0.41 0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.40 5.61 8.56 -40.82 -0.35 5.26 16 35 H 0.18 3.65 5.77 -52.48 -0.30 3.35 16 36 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 37 H 0.05 0.89 7.20 -51.93 -0.37 0.52 16 38 H 0.06 1.05 7.57 -51.93 -0.39 0.66 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -30.83 336.33 -9.08 -39.90 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.85 Total: 12.67 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -2.93 Total: 7.07 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 0.24 Total: -64.14 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.07 Total: -13.87 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.67 Total: 13.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.83 -9.08 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454839649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.065 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds