Wall clock time and date at job start Tue Mar 31 2020 00:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 120.00178 * 2 1 4 4 C 1.53002 * 109.47349 * 94.99386 * 3 2 1 5 5 C 1.50701 * 120.00283 * 179.97438 * 2 1 3 6 6 N 1.46495 * 109.46728 * 94.99967 * 5 2 1 7 7 C 1.34777 * 119.99663 * 179.97438 * 6 5 2 8 8 O 1.21843 * 120.00114 * 0.02562 * 7 6 5 9 9 N 1.33832 * 120.00147 * 180.27726 * 7 6 5 10 10 C 1.32931 * 120.00335 * 179.72624 * 9 7 6 11 11 C 1.41206 * 126.38025 * 0.02599 * 10 9 7 12 12 C 1.34956 * 108.25105 * 179.97438 * 11 10 9 13 13 N 1.36454 * 108.94396 * 359.97438 * 12 11 10 14 14 C 1.46497 * 125.85130 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46839 * 84.98263 * 14 13 12 16 16 H 1.07998 * 120.00121 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00297 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00421 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99740 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47026 * 90.00018 * 19 17 15 21 21 H 1.48498 * 109.46944 * 210.00034 * 19 17 15 22 22 H 1.48497 * 109.46902 * 329.99594 * 19 17 15 23 23 N 1.37423 * 126.38130 * 179.71062 * 10 9 7 24 24 H 0.97004 * 126.36573 * 0.03671 * 23 10 9 25 25 H 1.08009 * 119.99586 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00017 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47403 * 214.99960 * 3 2 1 28 28 H 1.09007 * 109.46719 * 334.99873 * 3 2 1 29 29 H 1.09000 * 109.46987 * 300.00850 * 4 3 2 30 30 H 1.09005 * 109.46610 * 60.00038 * 4 3 2 31 31 H 1.08996 * 109.47274 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.46569 * 335.00235 * 5 2 1 33 33 H 1.08997 * 109.47052 * 215.00481 * 5 2 1 34 34 H 0.97000 * 120.00601 * 0.02562 * 6 5 2 35 35 H 1.08006 * 125.87181 * 359.92613 * 11 10 9 36 36 H 1.07998 * 125.52710 * 180.02562 * 12 11 10 37 37 H 1.08999 * 109.47563 * 204.97521 * 14 13 12 38 38 H 1.08996 * 109.47475 * 324.98421 * 14 13 12 39 39 H 0.97005 * 120.00376 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.4274 1.6841 1.4370 5 6 2.0636 -1.3051 0.0006 6 7 2.4119 -1.6683 -1.3752 7 6 3.0936 -2.8049 -1.6200 8 8 3.4196 -3.5306 -0.6971 9 7 3.4167 -3.1341 -2.8763 10 6 4.0938 -4.2524 -3.1173 11 6 4.5372 -5.1866 -2.1559 12 6 5.1837 -6.1811 -2.7997 13 7 5.1725 -5.9222 -4.1394 14 6 5.7706 -6.7616 -5.1805 15 6 4.7959 -7.8401 -5.5777 16 1 3.8280 -7.8951 -5.1019 17 6 5.1399 -8.7567 -6.5485 18 7 4.2895 -9.6982 -6.8948 19 14 6.8144 -8.6621 -7.3710 20 1 7.7890 -9.4799 -6.6051 21 1 6.7145 -9.1818 -8.7585 22 1 7.2709 -7.2494 -7.4033 23 7 4.4872 -4.7177 -4.3491 24 1 4.3229 -4.2908 -5.2045 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.9742 1.1989 -0.5894 28 1 1.4386 2.0855 -0.4344 29 1 1.5166 1.7902 2.0264 30 1 3.0523 0.9037 1.8714 31 1 2.9720 2.6282 1.4370 32 1 1.4385 -2.0852 0.4352 33 1 2.9742 -1.1985 0.5900 34 1 2.1527 -1.0905 -2.1099 35 1 4.3858 -5.1169 -1.0888 36 1 5.6358 -7.0425 -2.3307 37 1 6.0080 -6.1484 -6.0498 38 1 6.6831 -7.2193 -4.7985 39 1 4.5313 -10.3429 -7.5781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454839649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:45 Heat of formation + Delta-G solvation = 64.682070 kcal Electronic energy + Delta-G solvation = -20466.088839 eV Core-core repulsion = 17218.142163 eV Total energy + Delta-G solvation = -3247.946676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27786 -40.38108 -37.93711 -35.93002 -34.70901 -34.45558 -32.58878 -32.50918 -31.24588 -28.90785 -27.10662 -24.50304 -24.36172 -23.08297 -22.66778 -21.19818 -19.73237 -19.25355 -18.58623 -17.58555 -17.10820 -16.65178 -16.47383 -16.07239 -15.94485 -15.61670 -15.17319 -15.04849 -14.76017 -14.46523 -14.22469 -13.95834 -13.84383 -13.74037 -13.23993 -13.12488 -12.72583 -12.59199 -12.23202 -11.83908 -11.74193 -11.64055 -11.29545 -11.26345 -10.90570 -10.51608 -10.21651 -9.92237 -9.89786 -8.42071 -8.33434 -6.55296 0.27779 0.58109 1.13947 1.40111 1.41454 1.50050 1.66984 2.26794 2.50599 2.91686 3.06952 3.13781 3.78259 3.89393 3.91486 4.26730 4.36894 4.41110 4.53459 4.54275 4.57148 4.64461 4.76750 4.81550 4.93045 4.98185 5.11757 5.16184 5.16554 5.24966 5.39669 5.64019 5.72094 5.88571 5.93981 6.02617 6.10422 6.43740 6.55455 6.89459 7.00190 7.11076 8.11638 8.74868 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047826 B = 0.002713 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.315136 B =10318.316930 C =10396.724628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.148 4.148 3 C -0.086 4.086 4 C -0.145 4.145 5 C 0.176 3.824 6 N -0.714 5.714 7 C 0.670 3.330 8 O -0.661 6.661 9 N -0.721 5.721 10 C 0.472 3.528 11 C -0.347 4.347 12 C 0.180 3.820 13 N -0.350 5.350 14 C 0.235 3.765 15 C -0.566 4.566 16 H 0.032 0.968 17 C 0.022 3.978 18 N -0.937 5.937 19 Si 0.951 3.049 20 H -0.256 1.256 21 H -0.289 1.289 22 H -0.232 1.232 23 N -0.466 5.466 24 H 0.453 0.547 25 H 0.124 0.876 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.405 0.595 35 H 0.172 0.828 36 H 0.226 0.774 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 17.353 8.938 19.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C -0.123 4.123 4 C -0.203 4.203 5 C 0.052 3.948 6 N -0.368 5.368 7 C 0.369 3.631 8 O -0.546 6.546 9 N -0.485 5.485 10 C 0.218 3.782 11 C -0.379 4.379 12 C 0.036 3.964 13 N -0.136 5.136 14 C 0.117 3.883 15 C -0.604 4.604 16 H 0.050 0.950 17 C -0.179 4.179 18 N -0.574 5.574 19 Si 0.772 3.228 20 H -0.180 1.180 21 H -0.215 1.215 22 H -0.155 1.155 23 N -0.190 5.190 24 H 0.302 0.698 25 H 0.142 0.858 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.189 0.811 36 H 0.243 0.757 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.225 17.153 8.591 19.223 hybrid contribution -0.012 -0.629 -0.733 0.966 sum 1.213 16.524 7.859 18.338 Atomic orbital electron populations 1.24025 0.94749 1.03059 0.97413 1.21742 0.95667 0.94489 1.02958 1.20602 0.99919 0.93555 0.98246 1.21729 1.01770 1.01347 0.95425 1.20046 0.98309 0.93942 0.82478 1.44696 1.59812 1.23289 1.08976 1.16986 0.79012 0.82038 0.85055 1.90703 1.61000 1.53471 1.49444 1.68103 1.35923 1.21614 1.22902 1.18927 0.85973 0.89473 0.83814 1.22312 1.14782 0.98762 1.02072 1.23365 0.93711 0.98522 0.80757 1.47437 1.46668 1.11688 1.07815 1.20255 0.93765 0.88047 0.86274 1.21442 1.02258 1.13483 1.23224 0.94965 1.25854 1.01921 0.93735 0.96377 1.70039 1.38392 1.17262 1.31752 0.85686 0.78224 0.81012 0.77865 1.18027 1.21456 1.15498 1.44363 1.51769 1.14379 1.08505 0.69824 0.85769 0.88633 0.92035 0.89650 0.91997 0.93587 0.91447 0.93031 0.92707 0.76012 0.81129 0.75720 0.91477 0.88786 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 13.88 67.78 0.94 -1.59 16 2 C -0.15 -2.85 4.67 -16.48 -0.08 -2.92 16 3 C -0.09 -1.35 6.10 29.85 0.18 -1.17 16 4 C -0.15 -2.05 9.90 71.98 0.71 -1.34 16 5 C 0.18 4.75 5.83 85.63 0.50 5.25 16 6 N -0.71 -22.66 5.55 -482.83 -2.68 -25.34 16 7 C 0.67 27.24 8.47 179.35 1.52 28.76 16 8 O -0.66 -30.05 13.26 -4.81 -0.06 -30.12 16 9 N -0.72 -29.09 10.59 -322.55 -3.42 -32.51 16 10 C 0.47 18.48 8.07 133.95 1.08 19.56 16 11 C -0.35 -13.01 9.52 22.24 0.21 -12.80 16 12 C 0.18 5.75 11.45 83.22 0.95 6.70 16 13 N -0.35 -12.11 3.63 -350.85 -1.28 -13.39 16 14 C 0.23 8.37 5.26 85.63 0.45 8.82 16 15 C -0.57 -27.35 9.94 25.60 0.25 -27.09 16 16 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 17 C 0.02 1.07 5.47 84.65 0.46 1.54 16 18 N -0.94 -52.60 13.96 21.45 0.30 -52.30 16 19 Si 0.95 35.28 27.47 68.60 1.88 37.17 16 20 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 21 H -0.29 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.23 -7.35 6.54 99.48 0.65 -6.70 16 23 N -0.47 -16.13 7.38 -54.79 -0.40 -16.53 16 24 H 0.45 13.59 8.96 -213.27 -1.91 11.68 16 25 H 0.12 1.45 7.99 -2.91 -0.02 1.43 16 26 H 0.10 1.67 7.99 -2.91 -0.02 1.65 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.06 7.99 -2.38 -0.02 1.04 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.51 7.99 -2.38 -0.02 1.49 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.40 11.37 8.56 -92.71 -0.79 10.58 16 35 H 0.17 6.95 5.77 -2.91 -0.02 6.93 16 36 H 0.23 5.22 8.06 -2.91 -0.02 5.20 16 37 H 0.07 2.21 7.20 -2.39 -0.02 2.19 16 38 H 0.09 2.84 7.57 -2.39 -0.02 2.82 16 39 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -69.37 336.33 -0.16 -69.53 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: -1.69 Total: 39.78 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.19 Total: 23.71 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -7.48 Total: -140.07 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.06 Total: -30.12 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 1.88 Total: 37.17 kcal Total: -69.37 -0.16 -69.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454839649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.211 kcal (2) G-P(sol) polarization free energy of solvation -69.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds