Wall clock time and date at job start Tue Mar 31 2020 00:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47412 * 2 1 4 4 C 1.53003 * 109.46874 * 240.00022 * 2 1 3 5 5 C 1.50699 * 109.47263 * 60.00368 * 4 2 1 6 6 H 1.07997 * 119.99913 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00004 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00121 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99706 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47289 * 59.99525 * 9 7 5 11 11 H 1.48502 * 109.46796 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47229 * 299.99067 * 9 7 5 13 13 C 1.53002 * 109.47469 * 120.00267 * 2 1 3 14 14 N 1.46503 * 109.46777 * 299.99826 * 13 2 1 15 15 C 1.34773 * 120.00069 * 180.27598 * 14 13 2 16 16 O 1.21585 * 120.00062 * 359.72091 * 15 14 13 17 17 N 1.34774 * 120.00098 * 179.72422 * 15 14 13 18 18 C 1.39578 * 120.00261 * 174.70759 * 17 15 14 19 19 C 1.39649 * 121.08421 * 327.70277 * 18 17 15 20 20 C 1.38309 * 117.88634 * 179.73542 * 19 18 17 21 21 N 1.32056 * 119.93123 * 0.54792 * 20 19 18 22 22 N 1.28314 * 122.37340 * 359.71507 * 21 20 19 23 23 C 1.31806 * 122.25871 * 359.97438 * 22 21 20 24 24 H 1.09006 * 109.47125 * 299.99810 * 1 2 3 25 25 H 1.09004 * 109.47558 * 59.99750 * 1 2 3 26 26 H 1.09000 * 109.47485 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47295 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47383 * 300.00278 * 3 2 1 29 29 H 1.08996 * 109.47365 * 60.00037 * 3 2 1 30 30 H 1.09004 * 109.46896 * 180.02562 * 4 2 1 31 31 H 1.08999 * 109.47349 * 299.99523 * 4 2 1 32 32 H 0.96999 * 119.99862 * 180.02562 * 8 7 5 33 33 H 1.08991 * 109.47409 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47047 * 59.99388 * 13 2 1 35 35 H 0.97002 * 119.99979 * 359.97438 * 14 13 2 36 36 H 0.96999 * 120.00160 * 354.71187 * 17 15 14 37 37 H 1.07997 * 121.05980 * 359.97438 * 19 18 17 38 38 H 1.08002 * 120.03294 * 180.23410 * 20 19 18 39 39 H 1.07997 * 120.13551 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6262 -1.5515 -3.8527 9 14 1.2470 0.3981 -5.2572 10 1 1.7419 1.7982 -5.2576 11 1 1.7421 -0.3019 -6.4697 12 1 -0.2379 0.3979 -5.2567 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8819 -0.4878 3.6695 16 8 2.5809 -1.4764 3.7810 17 7 1.4373 0.1508 4.7699 18 6 1.6857 -0.3836 6.0352 19 6 1.7555 -1.7641 6.2338 20 6 2.0107 -2.2214 7.5139 21 7 2.1685 -1.3598 8.5022 22 7 2.0998 -0.0908 8.3248 23 6 1.8670 0.4427 7.1423 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1299 -0.7217 -1.2491 31 1 1.6766 -1.7489 -1.2493 32 1 2.8605 -1.8829 -4.7337 33 1 3.1299 -0.7209 1.2494 34 1 1.6766 -1.7489 1.2492 35 1 0.9943 0.7582 2.3564 36 1 0.9445 0.9817 4.6826 37 1 1.6185 -2.4527 5.4132 38 1 2.0757 -3.2822 7.7061 39 1 1.8158 1.5158 7.0321 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459627618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:32 Heat of formation + Delta-G solvation = -5.475289 kcal Electronic energy + Delta-G solvation = -21050.196136 eV Core-core repulsion = 17799.207208 eV Total energy + Delta-G solvation = -3250.988928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -42.37414 -41.12230 -38.93667 -36.62520 -35.38490 -34.08769 -33.56968 -32.05957 -29.08703 -27.94276 -27.72029 -25.81364 -25.38865 -24.45484 -22.21748 -20.40361 -19.75268 -18.79133 -18.33817 -18.12707 -17.60032 -16.69235 -16.61432 -16.29287 -15.92111 -15.50541 -15.28167 -15.19815 -14.71875 -14.40583 -14.31071 -13.92166 -13.88201 -12.87595 -12.75492 -12.65906 -12.49123 -12.30779 -12.22371 -12.00690 -11.84984 -11.80109 -11.52691 -11.12251 -11.02320 -10.87437 -10.75581 -10.49758 -10.29439 -9.73904 -8.13445 -6.20919 -0.28022 -0.04362 1.29244 1.43720 1.44827 1.52112 1.87403 2.44605 2.62030 2.96389 3.19746 3.21472 3.50117 3.60989 3.93764 3.96754 4.09616 4.22962 4.40257 4.49319 4.67568 4.73501 4.75166 4.84646 4.97867 5.04633 5.10849 5.14695 5.34366 5.37701 5.45495 5.53240 5.55300 5.58067 5.72991 5.82016 5.91410 6.31520 6.80880 6.94769 7.28499 7.47025 7.70877 8.98780 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.053235 B = 0.002922 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.844344 B = 9580.903215 C = 9849.838743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.267 1.267 13 C 0.159 3.841 14 N -0.710 5.710 15 C 0.701 3.299 16 O -0.611 6.611 17 N -0.658 5.658 18 C 0.173 3.827 19 C -0.144 4.144 20 C 0.066 3.934 21 N -0.295 5.295 22 N -0.253 5.253 23 C 0.027 3.973 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.073 0.927 30 H -0.014 1.014 31 H -0.013 1.013 32 H 0.259 0.741 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.415 0.585 36 H 0.434 0.566 37 H 0.153 0.847 38 H 0.200 0.800 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 6.832 17.980 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.034 3.966 14 N -0.366 5.366 15 C 0.401 3.599 16 O -0.490 6.490 17 N -0.308 5.308 18 C 0.064 3.936 19 C -0.176 4.176 20 C -0.098 4.098 21 N -0.138 5.138 22 N -0.093 5.093 23 C -0.142 4.142 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.275 0.725 37 H 0.170 0.830 38 H 0.216 0.784 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.367 6.105 19.461 21.091 hybrid contribution -0.540 0.199 -3.019 3.073 sum -5.906 6.305 16.442 18.574 Atomic orbital electron populations 1.21705 0.93451 1.01061 1.01741 1.20709 0.96777 0.96317 0.92609 1.21711 0.99941 0.94584 1.01780 1.18974 0.94341 0.94274 0.92265 1.21573 1.30407 1.12103 0.91070 0.90873 1.25923 0.95707 0.95842 1.02673 1.70106 1.38780 1.24962 1.24124 0.85637 0.78975 0.78777 0.78482 1.19182 1.21904 1.19147 1.21172 0.97853 0.95222 0.82304 1.45019 1.55058 1.33452 1.03025 1.16048 0.79977 0.82771 0.81123 1.90954 1.43104 1.28910 1.86069 1.42256 1.58508 1.28462 1.01600 1.18689 0.95614 0.93419 0.85923 1.22556 0.99924 0.95607 0.99508 1.24584 0.93263 1.03283 0.88637 1.72836 1.13116 0.97476 1.30347 1.72844 1.08994 1.05991 1.21491 1.24661 0.97981 1.03445 0.88079 0.90876 0.92721 0.94377 0.94465 0.92705 0.90820 0.99527 0.99441 0.93211 0.93327 0.93060 0.74633 0.72492 0.82978 0.78361 0.77361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 8.05 71.98 0.58 -3.03 16 2 C -0.06 -2.14 0.54 -52.18 -0.03 -2.17 16 3 C -0.12 -3.64 8.05 71.98 0.58 -3.06 16 4 C 0.04 1.88 4.04 29.85 0.12 2.00 16 5 C -0.51 -26.32 7.65 25.60 0.20 -26.12 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.22 16 8 N -0.94 -55.76 13.29 21.45 0.28 -55.47 16 9 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.16 4.93 4.56 86.38 0.39 5.32 16 14 N -0.71 -15.36 4.96 -478.55 -2.37 -17.73 16 15 C 0.70 16.44 8.35 179.06 1.49 17.94 16 16 O -0.61 -20.00 14.05 -3.98 -0.06 -20.05 16 17 N -0.66 -9.82 5.36 -316.51 -1.70 -11.52 16 18 C 0.17 3.13 6.35 38.51 0.24 3.37 16 19 C -0.14 -3.00 8.82 22.63 0.20 -2.80 16 20 C 0.07 1.28 11.30 84.68 0.96 2.24 16 21 N -0.29 -7.04 11.50 -57.38 -0.66 -7.70 16 22 N -0.25 -5.74 11.49 -56.86 -0.65 -6.39 16 23 C 0.03 0.44 11.27 84.96 0.96 1.40 16 24 H 0.07 1.49 6.86 -2.38 -0.02 1.48 16 25 H 0.05 1.78 6.62 -2.39 -0.02 1.77 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 29 H 0.07 1.50 6.86 -2.39 -0.02 1.49 16 30 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 31 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 6.06 6.18 -92.71 -0.57 5.49 16 36 H 0.43 2.67 8.84 -92.71 -0.82 1.85 16 37 H 0.15 3.51 6.52 -2.91 -0.02 3.49 16 38 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -72.36 323.40 2.72 -69.64 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -0.31 Total: 9.60 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 6.16 Total: -4.70 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -5.10 Total: -98.81 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.06 Total: -20.05 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -72.36 2.72 -69.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459627618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.164 kcal (2) G-P(sol) polarization free energy of solvation -72.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds