Wall clock time and date at job start Tue Mar 31 2020 00:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 C 1.50706 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00109 * 269.72529 * 4 3 2 6 6 C 1.38238 * 119.99754 * 179.76611 * 5 4 3 7 7 C 1.38234 * 120.00016 * 0.50732 * 6 5 4 8 8 C 1.50696 * 120.00209 * 179.72225 * 7 6 5 9 9 S 1.81398 * 109.47250 * 270.02697 * 8 7 6 10 10 C 1.81401 * 103.00024 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47218 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46739 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00094 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00051 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00370 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99852 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.47256 * 89.99786 * 17 15 13 19 19 H 1.48499 * 109.47393 * 209.99565 * 17 15 13 20 20 H 1.48498 * 109.47289 * 330.00175 * 17 15 13 21 21 C 1.38238 * 120.00063 * 359.74632 * 7 6 5 22 22 C 1.38235 * 120.00108 * 0.02562 * 21 7 6 23 23 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 24 24 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 26 26 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 27 27 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 28 28 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 29 29 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 30 30 H 1.08004 * 119.99934 * 0.02562 * 5 4 3 31 31 H 1.07999 * 119.99924 * 180.23621 * 6 5 4 32 32 H 1.09003 * 109.47159 * 30.02324 * 8 7 6 33 33 H 1.08997 * 109.47406 * 150.02394 * 8 7 6 34 34 H 1.09001 * 109.47371 * 299.99824 * 10 9 8 35 35 H 1.09007 * 109.47088 * 60.00077 * 10 9 8 36 36 H 1.09001 * 109.47040 * 300.00313 * 11 10 9 37 37 H 1.08999 * 109.46938 * 59.99901 * 11 10 9 38 38 H 1.08999 * 109.47085 * 300.00122 * 12 11 10 39 39 H 1.09004 * 109.46655 * 60.00437 * 12 11 10 40 40 H 0.97000 * 120.00056 * 180.02562 * 16 15 13 41 41 H 1.08000 * 120.00578 * 179.97438 * 21 7 6 42 42 H 1.07999 * 120.00165 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2377 1.4484 1.1980 6 6 5.6201 1.4435 1.1986 7 6 6.3117 1.4432 0.0017 8 6 7.8187 1.4442 0.0022 9 16 8.4223 3.1548 0.0023 10 6 10.2249 2.9515 0.0037 11 6 10.8934 4.3278 0.0033 12 6 12.4137 4.1562 0.0051 13 6 13.0721 5.5118 0.0053 14 1 12.4668 6.4061 0.0038 15 6 14.4474 5.6103 0.0064 16 7 15.0220 6.7932 0.0060 17 14 15.4945 4.0633 0.0068 18 1 15.7730 3.6536 -1.3932 19 1 16.7756 4.3329 0.7077 20 1 14.7674 2.9736 0.7060 21 6 5.6210 1.4426 -1.1958 22 6 4.2387 1.4428 -1.1963 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6973 1.4526 2.1331 31 1 6.1597 1.4442 2.1341 32 1 8.1821 0.9307 0.8924 33 1 8.1827 0.9305 -0.8875 34 1 10.5277 2.4004 0.8941 35 1 10.5290 2.4000 -0.8860 36 1 10.5905 4.8785 -0.8873 37 1 10.5892 4.8797 0.8927 38 1 12.7162 3.6056 0.8959 39 1 12.7181 3.6041 -0.8841 40 1 15.9895 6.8624 0.0064 41 1 6.1613 1.4429 -2.1309 42 1 3.6990 1.4427 -2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000481901190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:22 Heat of formation + Delta-G solvation = -19.121928 kcal Electronic energy + Delta-G solvation = -17671.931849 eV Core-core repulsion = 14934.351622 eV Total energy + Delta-G solvation = -2737.580227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.70783 -35.75062 -34.58148 -32.59728 -32.08008 -31.10613 -28.77000 -28.00302 -25.29921 -23.18274 -22.92008 -22.07296 -20.79265 -20.13381 -16.89774 -16.45548 -16.08601 -15.76400 -15.34619 -14.97662 -14.66067 -14.47090 -14.03040 -13.93684 -13.61327 -13.49282 -13.07276 -12.70741 -12.60502 -12.33723 -12.28258 -11.97916 -11.86883 -11.51968 -11.27247 -11.21630 -11.06970 -10.95767 -10.86938 -10.11749 -9.89147 -9.74837 -9.53205 -9.21888 -9.08362 -8.60761 -8.55185 -7.48454 -6.05055 -4.03523 0.90834 1.25007 2.03640 2.81432 3.29285 3.36754 3.39583 3.64477 4.38885 4.43700 4.49989 4.60120 4.67255 4.72855 4.85139 4.95169 5.07740 5.21638 5.27483 5.27957 5.39406 5.39736 5.41193 5.46023 5.48613 5.49640 5.62348 5.75302 5.85144 5.90727 5.92086 5.99172 6.22799 6.41032 6.42247 6.42510 6.50605 6.81305 6.81933 7.24696 7.36903 7.76375 8.52710 9.00009 9.56681 11.08359 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.062642 B = 0.002236 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.879524 B =12520.005778 C =12630.572543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.081 4.081 4 C -0.083 4.083 5 C -0.118 4.118 6 C -0.099 4.099 7 C -0.070 4.070 8 C -0.051 4.051 9 S -0.262 6.262 10 C -0.081 4.081 11 C -0.087 4.087 12 C -0.007 4.007 13 C -0.521 4.521 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.099 4.099 22 C -0.118 4.118 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.017 0.983 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.124 0.876 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.543 -16.229 0.011 31.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.083 4.083 5 C -0.136 4.136 6 C -0.119 4.119 7 C -0.072 4.072 8 C -0.199 4.199 9 S -0.032 6.032 10 C -0.229 4.229 11 C -0.126 4.126 12 C -0.047 4.047 13 C -0.559 4.559 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.119 4.119 22 C -0.136 4.136 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.142 0.858 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -26.920 -15.197 0.013 30.913 hybrid contribution 1.517 -1.809 -0.021 2.361 sum -25.402 -17.006 -0.008 30.569 Atomic orbital electron populations 1.21793 0.95696 1.01695 1.01881 1.21512 0.95626 0.96105 1.02400 1.20641 0.90895 0.97340 1.02943 1.19900 0.95602 0.99599 0.93236 1.20982 0.93926 1.01124 0.97553 1.21036 0.94165 0.99120 0.97561 1.19251 0.93121 1.01007 0.93773 1.22259 0.94750 0.97463 1.05401 1.87187 1.07798 1.10150 1.98056 1.23664 0.91009 1.03989 1.04239 1.21274 0.97054 0.91842 1.02431 1.19576 0.90608 0.98126 0.96357 1.21114 0.91869 0.92031 1.50905 0.90899 1.25027 0.97998 0.95894 0.94564 1.69913 1.10235 1.22935 1.51032 0.86772 0.79841 0.84129 0.78487 1.20285 1.21328 1.19082 1.21036 0.94172 0.99122 0.97553 1.20982 0.93920 1.01129 0.97559 0.92684 0.92701 0.92676 0.91871 0.91871 0.91014 0.91008 0.86081 0.85825 0.89481 0.89483 0.90578 0.90587 0.91797 0.91776 0.96493 0.96933 0.92706 0.85826 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 3 C -0.08 -0.55 5.35 -27.88 -0.15 -0.70 16 4 C -0.08 -0.75 5.13 -104.62 -0.54 -1.28 16 5 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 6 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16 7 C -0.07 -0.80 5.14 -104.63 -0.54 -1.34 16 8 C -0.05 -0.60 6.07 36.00 0.22 -0.38 16 9 S -0.26 -4.01 21.72 -107.50 -2.33 -6.35 16 10 C -0.08 -1.33 5.94 37.16 0.22 -1.11 16 11 C -0.09 -1.77 5.16 -26.73 -0.14 -1.91 16 12 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 13 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 14 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 17 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 21 C -0.10 -1.05 9.70 -39.58 -0.38 -1.44 16 22 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 23 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.09 0.93 8.09 -51.92 -0.42 0.51 16 33 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 34 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 39 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -31.05 359.42 -11.13 -42.18 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.53 Total: -3.35 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -2.79 Total: -27.71 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.77 Total: -27.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.33 Total: -6.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.05 -11.13 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000481901190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.061 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds