Wall clock time and date at job start Tue Mar 31 2020 00:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 C 1.50706 * 109.47116 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00109 * 269.72529 * 4 3 2 6 6 C 1.38238 * 119.99754 * 179.76611 * 5 4 3 7 7 C 1.38234 * 120.00016 * 0.50732 * 6 5 4 8 8 C 1.50696 * 120.00209 * 179.72225 * 7 6 5 9 9 S 1.81398 * 109.47250 * 270.02697 * 8 7 6 10 10 C 1.81401 * 103.00024 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47218 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46932 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46739 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00094 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00051 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00370 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99852 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.47256 * 89.99786 * 17 15 13 19 19 H 1.48499 * 109.47393 * 209.99565 * 17 15 13 20 20 H 1.48498 * 109.47289 * 330.00175 * 17 15 13 21 21 C 1.38238 * 120.00063 * 359.74632 * 7 6 5 22 22 C 1.38235 * 120.00108 * 0.02562 * 21 7 6 23 23 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 24 24 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 26 26 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 27 27 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 28 28 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 29 29 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 30 30 H 1.08004 * 119.99934 * 0.02562 * 5 4 3 31 31 H 1.07999 * 119.99924 * 180.23621 * 6 5 4 32 32 H 1.09003 * 109.47159 * 30.02324 * 8 7 6 33 33 H 1.08997 * 109.47406 * 150.02394 * 8 7 6 34 34 H 1.09001 * 109.47371 * 299.99824 * 10 9 8 35 35 H 1.09007 * 109.47088 * 60.00077 * 10 9 8 36 36 H 1.09001 * 109.47040 * 300.00313 * 11 10 9 37 37 H 1.08999 * 109.46938 * 59.99901 * 11 10 9 38 38 H 1.08999 * 109.47085 * 300.00122 * 12 11 10 39 39 H 1.09004 * 109.46655 * 60.00437 * 12 11 10 40 40 H 0.97000 * 120.00056 * 180.02562 * 16 15 13 41 41 H 1.08000 * 120.00578 * 179.97438 * 21 7 6 42 42 H 1.07999 * 120.00165 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2377 1.4484 1.1980 6 6 5.6201 1.4435 1.1986 7 6 6.3117 1.4432 0.0017 8 6 7.8187 1.4442 0.0022 9 16 8.4223 3.1548 0.0023 10 6 10.2249 2.9515 0.0037 11 6 10.8934 4.3278 0.0033 12 6 12.4137 4.1562 0.0051 13 6 13.0721 5.5118 0.0053 14 1 12.4668 6.4061 0.0038 15 6 14.4474 5.6103 0.0064 16 7 15.0220 6.7932 0.0060 17 14 15.4945 4.0633 0.0068 18 1 15.7730 3.6536 -1.3932 19 1 16.7756 4.3329 0.7077 20 1 14.7674 2.9736 0.7060 21 6 5.6210 1.4426 -1.1958 22 6 4.2387 1.4428 -1.1963 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.6973 1.4526 2.1331 31 1 6.1597 1.4442 2.1341 32 1 8.1821 0.9307 0.8924 33 1 8.1827 0.9305 -0.8875 34 1 10.5277 2.4004 0.8941 35 1 10.5290 2.4000 -0.8860 36 1 10.5905 4.8785 -0.8873 37 1 10.5892 4.8797 0.8927 38 1 12.7162 3.6056 0.8959 39 1 12.7181 3.6041 -0.8841 40 1 15.9895 6.8624 0.0064 41 1 6.1613 1.4429 -2.1309 42 1 3.6990 1.4427 -2.1319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000481901190.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:21 Heat of formation + Delta-G solvation = -32.848159 kcal Electronic energy + Delta-G solvation = -17672.527063 eV Core-core repulsion = 14934.351622 eV Total energy + Delta-G solvation = -2738.175441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.42914 -36.42158 -36.32131 -34.16704 -33.26989 -31.84126 -29.97586 -29.33570 -26.05242 -24.94333 -23.65856 -22.69145 -21.98397 -21.38597 -18.97540 -17.47104 -16.78919 -16.78546 -16.35967 -16.25047 -16.08663 -15.43066 -15.23236 -14.73705 -14.55620 -14.36500 -14.24923 -14.05351 -13.88481 -13.50773 -13.30175 -12.93977 -12.82198 -12.77734 -12.65983 -12.05764 -11.92791 -11.83566 -11.73484 -11.59929 -11.52404 -11.47421 -11.36758 -10.90783 -10.77771 -9.83344 -9.39603 -8.67433 -8.30308 -6.35730 0.04028 0.50148 1.00910 1.36078 1.38456 1.50391 1.69510 2.35837 2.88859 3.04713 3.66185 3.80873 3.91670 4.02962 4.03941 4.06348 4.12959 4.27271 4.29926 4.50588 4.54391 4.55087 4.63197 4.63539 4.75013 4.83151 4.84233 4.90141 4.98563 5.02957 5.07724 5.15485 5.27610 5.30312 5.42620 5.46258 5.50103 5.51076 5.63086 5.64326 5.72814 6.09076 6.26108 6.71970 7.28738 8.86714 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.062642 B = 0.002236 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.879524 B =12520.005778 C =12630.572543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.079 4.079 4 C -0.083 4.083 5 C -0.126 4.126 6 C -0.109 4.109 7 C -0.090 4.090 8 C -0.034 4.034 9 S -0.300 6.300 10 C -0.070 4.070 11 C -0.079 4.079 12 C -0.004 4.004 13 C -0.538 4.538 14 H 0.027 0.973 15 C 0.002 3.998 16 N -0.952 5.952 17 Si 0.956 3.044 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.242 1.242 21 C -0.109 4.109 22 C -0.126 4.126 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.267 0.733 41 H 0.129 0.871 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.637 -19.087 0.000 33.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.116 4.116 4 C -0.084 4.084 5 C -0.143 4.143 6 C -0.129 4.129 7 C -0.091 4.091 8 C -0.181 4.181 9 S -0.070 6.070 10 C -0.218 4.218 11 C -0.118 4.118 12 C -0.043 4.043 13 C -0.576 4.576 14 H 0.046 0.954 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.779 3.221 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.166 1.166 21 C -0.129 4.129 22 C -0.143 4.143 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.147 0.853 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.029 -18.057 0.001 33.342 hybrid contribution 1.698 -0.841 -0.019 1.895 sum -26.331 -18.898 -0.018 32.411 Atomic orbital electron populations 1.21781 0.94854 1.02076 1.02214 1.21477 0.96316 0.95457 1.02098 1.20677 0.89359 0.97968 1.03597 1.20211 0.96854 0.98312 0.92981 1.21247 0.93736 1.00777 0.98584 1.21225 0.94856 0.99177 0.97655 1.19317 0.92890 1.02524 0.94381 1.22275 0.94994 0.94269 1.06578 1.87322 1.07057 1.14405 1.98199 1.23401 0.91625 1.01239 1.05544 1.21043 0.95327 0.94280 1.01165 1.19505 0.92577 0.95187 0.97069 1.21485 0.92200 0.93120 1.50818 0.95442 1.26093 0.99587 0.99905 0.93923 1.70080 1.10844 1.25878 1.52450 0.85576 0.77637 0.79606 0.79316 1.19001 1.20958 1.16574 1.21226 0.94863 0.99177 0.97648 1.21248 0.93729 1.00776 0.98588 0.92359 0.92333 0.92353 0.92185 0.92190 0.90376 0.90368 0.84408 0.85285 0.88295 0.88281 0.89277 0.89211 0.93145 0.93168 0.95559 0.95674 0.92435 0.85278 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.20 5.92 30.59 0.18 -1.02 16 3 C -0.08 -0.92 5.35 29.85 0.16 -0.76 16 4 C -0.08 -1.35 5.13 -19.86 -0.10 -1.45 16 5 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 6 C -0.11 -2.17 9.70 22.27 0.22 -1.96 16 7 C -0.09 -1.91 5.14 -19.87 -0.10 -2.01 16 8 C -0.03 -0.74 6.07 71.23 0.43 -0.30 16 9 S -0.30 -8.89 21.72 -56.49 -1.23 -10.11 16 10 C -0.07 -2.19 5.94 71.98 0.43 -1.76 16 11 C -0.08 -3.22 5.16 30.60 0.16 -3.06 16 12 C 0.00 -0.20 4.04 29.85 0.12 -0.08 16 13 C -0.54 -31.85 9.66 25.60 0.25 -31.60 16 14 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 15 C 0.00 0.09 5.47 84.65 0.46 0.55 16 16 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 17 Si 0.96 44.19 27.47 68.60 1.88 46.08 16 18 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 21 C -0.11 -2.17 9.70 22.27 0.22 -1.95 16 22 C -0.13 -2.17 9.70 22.27 0.22 -1.96 16 23 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.10 1.89 8.09 -2.39 -0.02 1.87 16 33 H 0.10 1.89 8.09 -2.39 -0.02 1.87 16 34 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.03 1.18 7.20 -2.39 -0.02 1.17 16 39 H 0.02 1.12 7.57 -2.38 -0.02 1.10 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -68.02 359.42 5.41 -62.61 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.89 Total: 11.74 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 3.56 Total: -49.88 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.30 Total: -60.44 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.23 Total: -10.11 kcal Total: -68.02 5.41 -62.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000481901190.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.764 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds