Wall clock time and date at job start Tue Mar 31 2020 00:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 S 1.81407 * 109.46870 * 270.01693 * 8 7 6 10 10 C 1.81398 * 102.99919 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47441 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47410 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46651 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99253 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99429 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47049 * 90.00254 * 17 15 13 19 19 H 1.48508 * 109.46963 * 210.00115 * 17 15 13 20 20 H 1.48491 * 109.47327 * 329.99829 * 17 15 13 21 21 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 22 22 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 32 32 H 1.08993 * 109.47425 * 30.01501 * 8 7 6 33 33 H 1.09005 * 109.47338 * 150.01905 * 8 7 6 34 34 H 1.09002 * 109.47635 * 300.00282 * 10 9 8 35 35 H 1.09004 * 109.47461 * 60.00179 * 10 9 8 36 36 H 1.09002 * 109.47166 * 300.00210 * 11 10 9 37 37 H 1.08999 * 109.46964 * 59.99999 * 11 10 9 38 38 H 1.08997 * 109.47135 * 299.99738 * 12 11 10 39 39 H 1.08994 * 109.47120 * 60.00522 * 12 11 10 40 40 H 0.97003 * 119.99606 * 180.02562 * 16 15 13 41 41 H 1.08003 * 120.00252 * 179.97438 * 21 7 6 42 42 H 1.07991 * 120.00142 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 16 2.2611 -3.9967 -5.2121 10 6 3.0285 -4.7277 -6.6843 11 6 2.1286 -5.8379 -7.2305 12 6 2.7762 -6.4550 -8.4718 13 6 1.8894 -7.5481 -9.0101 14 1 0.9575 -7.7799 -8.5161 15 6 2.2685 -8.2531 -10.1329 16 7 3.4041 -7.9718 -10.7336 17 14 1.1697 -9.6086 -10.7997 18 1 0.2184 -9.0348 -11.7852 19 1 2.0053 -10.6422 -11.4622 20 1 0.4120 -10.2264 -9.6820 21 6 3.2875 -2.4861 -2.2324 22 6 2.8271 -1.8343 -1.1037 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.0688 0.6339 -2.5850 31 1 1.8972 -0.5213 -4.5956 32 1 3.5770 -2.0055 -5.5288 33 1 4.4162 -3.1921 -4.5012 34 1 3.1600 -3.9586 -7.4454 35 1 3.9995 -5.1455 -6.4184 36 1 1.9976 -6.6070 -6.4692 37 1 1.1574 -5.4206 -7.4963 38 1 2.9075 -5.6862 -9.2333 39 1 3.7472 -6.8724 -8.2056 40 1 3.6706 -8.4675 -11.5236 41 1 3.9084 -3.3643 -2.1333 42 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540647383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:25 Heat of formation + Delta-G solvation = -19.837731 kcal Electronic energy + Delta-G solvation = -17859.468029 eV Core-core repulsion = 15121.856763 eV Total energy + Delta-G solvation = -2737.611267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.81824 -36.02476 -34.43982 -32.01455 -31.85092 -31.05195 -27.59097 -27.46287 -26.82177 -23.48134 -23.07107 -22.22612 -20.31072 -20.04959 -16.78348 -16.37027 -15.87567 -15.59402 -15.25160 -14.63844 -14.56341 -14.26776 -14.09953 -13.88300 -13.59468 -13.54361 -12.83601 -12.65493 -12.54423 -12.33009 -12.19494 -11.72576 -11.65410 -11.45646 -11.39853 -10.94434 -10.88365 -10.87744 -10.85392 -10.52432 -9.83900 -9.78366 -9.29608 -9.11157 -9.04106 -8.56286 -8.36576 -7.41144 -6.01590 -4.03972 0.96425 1.29057 2.11554 2.90323 3.32278 3.38241 3.42416 3.69480 4.35396 4.45659 4.48097 4.64829 4.74212 4.86971 4.88340 5.08940 5.13989 5.29338 5.29983 5.34318 5.41738 5.47262 5.50225 5.52295 5.58056 5.65249 5.65534 5.86938 5.88988 5.91543 5.95134 6.14277 6.28138 6.46677 6.47340 6.56581 6.72969 6.85333 7.02755 7.63746 7.76029 7.97477 8.39517 9.02480 9.60140 11.09731 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048297 B = 0.002311 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.612170 B =12113.913863 C =12331.745505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.077 4.077 5 C -0.115 4.115 6 C -0.100 4.100 7 C -0.069 4.069 8 C -0.051 4.051 9 S -0.269 6.269 10 C -0.075 4.075 11 C -0.094 4.094 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.099 4.099 22 C -0.119 4.119 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.124 0.876 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 18.482 21.146 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.078 4.078 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.070 4.070 8 C -0.198 4.198 9 S -0.039 6.039 10 C -0.223 4.223 11 C -0.133 4.133 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.119 4.119 22 C -0.137 4.137 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.142 0.858 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.599 18.146 21.450 28.141 hybrid contribution 0.687 -0.510 -1.135 1.422 sum -0.912 17.636 20.315 26.917 Atomic orbital electron populations 1.21863 0.94270 1.02196 1.01878 1.20129 0.96029 0.95988 0.95398 1.21856 1.01207 0.95150 1.01894 1.19857 0.97581 0.95751 0.94628 1.20906 1.00411 1.00213 0.91785 1.21031 0.96842 0.95187 0.98869 1.19266 0.98828 0.95577 0.93366 1.22251 1.00207 0.99099 0.98236 1.87117 1.34633 1.43880 1.38276 1.23648 1.02144 1.01590 0.94961 1.21461 0.97756 0.94527 0.99604 1.19105 0.96019 0.95378 0.90651 1.21228 1.05892 1.17597 1.11142 0.92538 1.25031 0.95227 0.97445 0.96802 1.69964 1.21655 1.41484 1.20420 0.86565 0.80457 0.81702 0.79126 1.20624 1.21211 1.19820 1.21032 0.99820 0.99376 0.91680 1.21002 0.98551 0.95684 0.98421 0.92401 0.92461 0.92386 0.90548 0.92560 0.92425 0.92451 0.86143 0.85855 0.89482 0.89482 0.90586 0.90587 0.92409 0.92411 0.96450 0.96432 0.92978 0.85835 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.00 37.16 0.33 -0.65 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.70 16 3 C -0.14 -0.90 9.01 37.16 0.33 -0.57 16 4 C -0.08 -0.72 4.78 -104.62 -0.50 -1.22 16 5 C -0.12 -1.12 8.71 -39.58 -0.34 -1.47 16 6 C -0.10 -1.09 9.70 -39.58 -0.38 -1.48 16 7 C -0.07 -0.82 5.14 -104.62 -0.54 -1.35 16 8 C -0.05 -0.63 6.07 36.01 0.22 -0.41 16 9 S -0.27 -4.29 21.72 -107.50 -2.33 -6.63 16 10 C -0.08 -1.33 5.94 37.16 0.22 -1.10 16 11 C -0.09 -2.00 5.16 -26.73 -0.14 -2.14 16 12 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 13 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.10 -1.09 9.70 -39.58 -0.38 -1.48 16 22 C -0.12 -1.16 9.67 -39.58 -0.38 -1.55 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.40 7.37 -51.93 -0.38 0.01 16 26 H 0.08 0.51 7.88 -51.93 -0.41 0.10 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.36 7.41 -51.93 -0.38 -0.03 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.12 0.97 7.10 -52.48 -0.37 0.59 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.09 1.00 8.09 -51.92 -0.42 0.58 16 34 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 35 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -30.44 358.85 -11.03 -41.47 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -7.42 Total: -3.59 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -2.40 Total: -27.22 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -2.33 Total: -6.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.44 -11.03 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540647383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.634 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds