Wall clock time and date at job start Tue Mar 31 2020 00:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 S 1.81407 * 109.46870 * 270.01693 * 8 7 6 10 10 C 1.81398 * 102.99919 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47441 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.47410 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46651 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99253 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00100 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99429 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47049 * 90.00254 * 17 15 13 19 19 H 1.48508 * 109.46963 * 210.00115 * 17 15 13 20 20 H 1.48491 * 109.47327 * 329.99829 * 17 15 13 21 21 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 22 22 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 32 32 H 1.08993 * 109.47425 * 30.01501 * 8 7 6 33 33 H 1.09005 * 109.47338 * 150.01905 * 8 7 6 34 34 H 1.09002 * 109.47635 * 300.00282 * 10 9 8 35 35 H 1.09004 * 109.47461 * 60.00179 * 10 9 8 36 36 H 1.09002 * 109.47166 * 300.00210 * 11 10 9 37 37 H 1.08999 * 109.46964 * 59.99999 * 11 10 9 38 38 H 1.08997 * 109.47135 * 299.99738 * 12 11 10 39 39 H 1.08994 * 109.47120 * 60.00522 * 12 11 10 40 40 H 0.97003 * 119.99606 * 180.02562 * 16 15 13 41 41 H 1.08003 * 120.00252 * 179.97438 * 21 7 6 42 42 H 1.07991 * 120.00142 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 16 2.2611 -3.9967 -5.2121 10 6 3.0285 -4.7277 -6.6843 11 6 2.1286 -5.8379 -7.2305 12 6 2.7762 -6.4550 -8.4718 13 6 1.8894 -7.5481 -9.0101 14 1 0.9575 -7.7799 -8.5161 15 6 2.2685 -8.2531 -10.1329 16 7 3.4041 -7.9718 -10.7336 17 14 1.1697 -9.6086 -10.7997 18 1 0.2184 -9.0348 -11.7852 19 1 2.0053 -10.6422 -11.4622 20 1 0.4120 -10.2264 -9.6820 21 6 3.2875 -2.4861 -2.2324 22 6 2.8271 -1.8343 -1.1037 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.0688 0.6339 -2.5850 31 1 1.8972 -0.5213 -4.5956 32 1 3.5770 -2.0055 -5.5288 33 1 4.4162 -3.1921 -4.5012 34 1 3.1600 -3.9586 -7.4454 35 1 3.9995 -5.1455 -6.4184 36 1 1.9976 -6.6070 -6.4692 37 1 1.1574 -5.4206 -7.4963 38 1 2.9075 -5.6862 -9.2333 39 1 3.7472 -6.8724 -8.2056 40 1 3.6706 -8.4675 -11.5236 41 1 3.9084 -3.3643 -2.1333 42 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540647383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:23 Heat of formation + Delta-G solvation = -32.390544 kcal Electronic energy + Delta-G solvation = -17860.012360 eV Core-core repulsion = 15121.856763 eV Total energy + Delta-G solvation = -2738.155598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56680 -36.68737 -36.37092 -34.05767 -32.63734 -31.82559 -29.45941 -27.95644 -27.75988 -25.36322 -23.87950 -23.06278 -22.02950 -20.80123 -18.59021 -17.51832 -16.94824 -16.59579 -16.52032 -16.18795 -16.00250 -15.22667 -14.93973 -14.64010 -14.46565 -14.35952 -14.34980 -13.90074 -13.78864 -13.36936 -13.22203 -12.96811 -12.84139 -12.75280 -12.70473 -12.35959 -12.15014 -11.99856 -11.67328 -11.60541 -11.49189 -11.44593 -11.21371 -10.89066 -10.57670 -9.82766 -9.40483 -8.67779 -8.22425 -6.33552 0.04541 0.50569 1.00596 1.39607 1.40876 1.52307 1.67644 2.40081 2.89688 3.10725 3.63488 3.77581 3.86919 4.01417 4.02554 4.09523 4.13292 4.34276 4.34606 4.49235 4.54590 4.57887 4.61445 4.70067 4.80148 4.83222 4.95603 4.98111 5.01743 5.06173 5.11515 5.16816 5.19910 5.35763 5.40984 5.47193 5.52053 5.64856 5.66370 5.74984 5.80513 6.08826 6.20934 6.81830 7.35515 8.89242 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048297 B = 0.002311 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.612170 B =12113.913863 C =12331.745505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.076 4.076 5 C -0.120 4.120 6 C -0.109 4.109 7 C -0.089 4.089 8 C -0.036 4.036 9 S -0.290 6.290 10 C -0.069 4.069 11 C -0.080 4.080 12 C 0.031 3.969 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.000 4.000 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.109 4.109 22 C -0.126 4.126 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.054 0.946 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.265 0.735 41 H 0.128 0.872 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 19.222 22.564 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.077 4.077 5 C -0.138 4.138 6 C -0.129 4.129 7 C -0.091 4.091 8 C -0.183 4.183 9 S -0.060 6.060 10 C -0.217 4.217 11 C -0.119 4.119 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.129 4.129 22 C -0.144 4.144 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.073 0.927 41 H 0.146 0.854 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.388 18.886 22.869 29.755 hybrid contribution 0.948 -0.636 -1.470 1.861 sum -1.440 18.249 21.400 28.161 Atomic orbital electron populations 1.21859 0.93915 1.01776 1.02579 1.20185 0.96250 0.96436 0.94608 1.21841 1.00976 0.94515 1.02572 1.20179 0.96678 0.95420 0.95398 1.21138 1.00397 1.00636 0.91639 1.21207 0.96821 0.95226 0.99665 1.19294 1.00183 0.96314 0.93267 1.22282 0.99237 0.97883 0.98931 1.87124 1.36311 1.45555 1.36997 1.23366 1.01451 1.00705 0.96189 1.21164 0.97807 0.95450 0.97495 1.18980 0.95124 0.94507 0.92171 1.21663 1.06404 1.18583 1.11742 0.92364 1.25980 0.96719 1.00028 0.97065 1.70085 1.23359 1.42747 1.20930 0.85432 0.78521 0.78417 0.78599 1.19673 1.20527 1.18903 1.21211 1.00062 0.99738 0.91874 1.21280 0.98397 0.95763 0.98947 0.93362 0.91033 0.92476 0.89764 0.92908 0.92439 0.91135 0.84550 0.85388 0.88527 0.88531 0.90163 0.90176 0.92782 0.92755 0.98486 0.98474 0.92665 0.85357 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.00 71.98 0.65 -1.02 16 2 C -0.06 -0.69 3.09 -11.54 -0.04 -0.72 16 3 C -0.14 -1.45 9.01 71.98 0.65 -0.80 16 4 C -0.08 -1.28 4.78 -19.87 -0.09 -1.37 16 5 C -0.12 -2.15 8.71 22.27 0.19 -1.96 16 6 C -0.11 -2.28 9.70 22.27 0.22 -2.06 16 7 C -0.09 -2.01 5.14 -19.87 -0.10 -2.11 16 8 C -0.04 -0.86 6.07 71.24 0.43 -0.43 16 9 S -0.29 -9.09 21.72 -56.49 -1.23 -10.32 16 10 C -0.07 -2.43 5.94 71.98 0.43 -2.00 16 11 C -0.08 -3.47 5.16 30.59 0.16 -3.31 16 12 C 0.03 1.66 4.97 29.85 0.15 1.81 16 13 C -0.55 -31.72 9.11 25.60 0.23 -31.49 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 15 C 0.00 0.00 5.46 84.66 0.46 0.46 16 16 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 17 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 21 C -0.11 -2.27 9.70 22.27 0.22 -2.06 16 22 C -0.13 -2.27 9.67 22.27 0.22 -2.05 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.67 7.37 -2.39 -0.02 0.65 16 26 H 0.08 0.91 7.88 -2.39 -0.02 0.89 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.59 7.41 -2.39 -0.02 0.57 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.14 1.93 7.10 -2.91 -0.02 1.91 16 31 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 33 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 34 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.14 1.90 7.95 -2.92 -0.02 1.88 16 Total: -1.00 -64.97 358.85 5.80 -59.16 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.95 Total: 10.07 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 3.77 Total: -49.13 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.23 Total: -10.32 kcal Total: -64.97 5.80 -59.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540647383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.774 kcal (2) G-P(sol) polarization free energy of solvation -64.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds