Wall clock time and date at job start Tue Mar 31 2020 00:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47388 * 2 1 4 4 C 1.50701 * 109.47277 * 239.99686 * 2 1 3 5 5 H 1.07999 * 120.00474 * 239.99653 * 4 2 1 6 6 C 1.37876 * 119.99638 * 60.00248 * 4 2 1 7 7 N 1.31514 * 120.00187 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47405 * 59.99763 * 8 6 4 10 10 H 1.48504 * 109.47171 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47348 * 299.99694 * 8 6 4 12 12 C 1.53008 * 109.47180 * 120.00207 * 2 1 3 13 13 S 1.81401 * 109.46608 * 299.99799 * 12 2 1 14 14 C 1.81408 * 102.99615 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.46973 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 1.09001 * 109.46981 * 299.99759 * 1 2 3 24 24 H 1.08993 * 109.47125 * 59.99914 * 1 2 3 25 25 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47403 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47058 * 300.00127 * 3 2 1 28 28 H 1.09001 * 109.46863 * 60.00169 * 3 2 1 29 29 H 0.96995 * 120.00399 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.47024 * 180.02562 * 12 2 1 31 31 H 1.08994 * 109.47015 * 59.99559 * 12 2 1 32 32 H 1.08992 * 109.47499 * 60.00165 * 14 13 12 33 33 H 1.08999 * 109.46513 * 299.99835 * 14 13 12 34 34 H 1.08995 * 109.47671 * 59.99598 * 15 14 13 35 35 H 1.09004 * 109.46984 * 299.99614 * 15 14 13 36 36 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 37 37 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 38 38 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 42 42 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 6 2.0400 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 6 2.1332 -0.8517 4.0841 15 6 1.7073 -0.2503 5.4249 16 6 2.2953 -1.0819 6.5665 17 6 1.8763 -0.4892 7.8873 18 6 0.7066 -0.9085 8.4931 19 6 0.3226 -0.3652 9.7048 20 6 1.1085 0.5969 10.3110 21 6 2.2754 1.0201 9.7027 22 6 2.6618 0.4735 8.4932 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1608 -3.4843 30 1 3.1301 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 3.2208 -0.8481 4.0130 33 1 1.7678 -1.8762 4.0133 34 1 0.6196 -0.2542 5.4958 35 1 2.0723 0.7743 5.4958 36 1 3.3830 -1.0784 6.4959 37 1 1.9299 -2.1063 6.4955 38 1 0.0928 -1.6606 8.0196 39 1 -0.5914 -0.6925 10.1778 40 1 0.8086 1.0210 11.2579 41 1 2.8872 1.7750 10.1741 42 1 3.5760 0.8005 8.0203 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568271177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:06 Heat of formation + Delta-G solvation = -7.353385 kcal Electronic energy + Delta-G solvation = -18366.786472 eV Core-core repulsion = 15629.716567 eV Total energy + Delta-G solvation = -2737.069905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.48346 -35.89445 -35.19721 -31.48294 -31.17175 -31.07287 -26.85063 -25.91569 -25.55902 -25.07852 -22.75898 -22.32074 -20.90431 -18.85081 -17.00906 -15.95673 -15.76208 -15.65565 -15.08618 -14.68444 -14.66305 -13.91943 -13.67129 -13.59896 -13.19958 -13.17480 -12.70282 -12.31404 -12.21459 -11.96597 -11.45190 -11.32399 -11.21415 -11.20455 -10.88208 -10.80608 -10.68674 -10.59498 -10.22558 -10.02307 -9.50810 -9.45878 -9.29725 -9.10974 -8.83835 -8.52234 -8.34160 -6.93308 -5.96069 -4.07670 1.16196 1.21198 2.32736 3.30408 3.34986 3.35970 3.41419 3.60302 4.42231 4.54830 4.63650 4.80773 4.92520 4.95885 5.19445 5.26965 5.29329 5.30488 5.34141 5.49535 5.65777 5.75541 5.84135 5.88660 6.04154 6.06611 6.19751 6.23576 6.28229 6.32042 6.48205 6.59919 6.82344 6.89235 7.04115 7.22333 7.22861 7.45535 7.69764 7.74579 8.11927 8.23097 8.45428 8.91518 9.57221 11.04624 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050242 B = 0.002622 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.166538 B =10675.402197 C =10736.251959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.053 0.947 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.052 4.052 13 S -0.272 6.272 14 C -0.099 4.099 15 C -0.092 4.092 16 C -0.079 4.079 17 C -0.076 4.076 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.119 4.119 22 C -0.117 4.117 23 H 0.021 0.979 24 H 0.082 0.918 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.082 0.918 28 H 0.021 0.979 29 H 0.260 0.740 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -1.943 21.681 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.081 3.919 3 C -0.189 4.189 4 C -0.547 4.547 5 H 0.071 0.929 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.200 4.200 13 S -0.044 6.044 14 C -0.247 4.247 15 C -0.131 4.131 16 C -0.117 4.117 17 C -0.077 4.077 18 C -0.135 4.135 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.135 4.135 23 H 0.040 0.960 24 H 0.101 0.899 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.655 -0.925 21.597 21.627 hybrid contribution 1.154 -1.631 -0.932 2.205 sum 1.809 -2.557 20.665 20.901 Atomic orbital electron populations 1.21843 0.97412 0.99026 1.00661 1.17949 0.92980 0.92491 0.88507 1.21844 0.98192 0.98246 1.00660 1.21007 1.31643 1.12046 0.90021 0.92857 1.24886 0.94933 0.94948 0.98714 1.69819 1.36418 1.22651 1.23256 0.86659 0.79147 0.79763 0.82399 1.20352 1.21254 1.20358 1.23808 1.01599 1.00620 0.93936 1.86891 1.71220 1.44581 1.01670 1.23356 1.02887 1.01746 0.96735 1.21254 1.01490 0.99482 0.90845 1.20662 1.01177 0.99244 0.90667 1.19943 0.94919 0.96665 0.96139 1.21099 0.96409 1.00426 0.95601 1.21147 0.99650 0.97205 0.95738 1.21133 0.95403 0.98034 1.00115 1.21148 0.96964 0.99873 0.95752 1.21097 0.99962 0.96844 0.95631 0.95991 0.89905 0.95805 0.95804 0.89910 0.95989 0.92939 0.91808 0.91805 0.90892 0.90898 0.91045 0.91042 0.90846 0.90841 0.86034 0.86192 0.86324 0.86190 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.01 37.16 0.30 -2.94 16 2 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 3 C -0.13 -3.24 8.01 37.16 0.30 -2.94 16 4 C -0.51 -13.61 8.01 -34.44 -0.28 -13.89 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -24.44 9.35 55.43 0.52 -23.92 16 8 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C -0.05 -1.09 4.88 37.16 0.18 -0.91 16 13 S -0.27 -5.07 18.79 -107.50 -2.02 -7.09 16 14 C -0.10 -1.38 5.94 37.16 0.22 -1.16 16 15 C -0.09 -1.10 5.20 -26.74 -0.14 -1.24 16 16 C -0.08 -0.77 5.34 -27.88 -0.15 -0.92 16 17 C -0.08 -0.78 5.13 -104.62 -0.54 -1.31 16 18 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 19 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 20 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 22 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 23 H 0.02 0.50 6.91 -51.93 -0.36 0.14 16 24 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 28 H 0.02 0.50 6.91 -51.93 -0.36 0.14 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 30 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -28.02 348.37 -10.74 -38.76 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.23 Total: 0.20 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: -2.24 Total: -29.14 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.52 Total: -23.92 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -2.02 Total: -7.09 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.02 -10.74 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568271177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.402 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds