Wall clock time and date at job start Tue Mar 31 2020 00:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47388 * 2 1 4 4 C 1.50701 * 109.47277 * 239.99686 * 2 1 3 5 5 H 1.07999 * 120.00474 * 239.99653 * 4 2 1 6 6 C 1.37876 * 119.99638 * 60.00248 * 4 2 1 7 7 N 1.31514 * 120.00187 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00020 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47405 * 59.99763 * 8 6 4 10 10 H 1.48504 * 109.47171 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47348 * 299.99694 * 8 6 4 12 12 C 1.53008 * 109.47180 * 120.00207 * 2 1 3 13 13 S 1.81401 * 109.46608 * 299.99799 * 12 2 1 14 14 C 1.81408 * 102.99615 * 180.02562 * 13 12 2 15 15 C 1.52997 * 109.46973 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47085 * 179.97438 * 15 14 13 17 17 C 1.50707 * 109.47301 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99792 * 90.00016 * 17 16 15 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 269.97953 * 17 16 15 23 23 H 1.09001 * 109.46981 * 299.99759 * 1 2 3 24 24 H 1.08993 * 109.47125 * 59.99914 * 1 2 3 25 25 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47403 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47058 * 300.00127 * 3 2 1 28 28 H 1.09001 * 109.46863 * 60.00169 * 3 2 1 29 29 H 0.96995 * 120.00399 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.47024 * 180.02562 * 12 2 1 31 31 H 1.08994 * 109.47015 * 59.99559 * 12 2 1 32 32 H 1.08992 * 109.47499 * 60.00165 * 14 13 12 33 33 H 1.08999 * 109.46513 * 299.99835 * 14 13 12 34 34 H 1.08995 * 109.47671 * 59.99598 * 15 14 13 35 35 H 1.09004 * 109.46984 * 299.99614 * 15 14 13 36 36 H 1.09005 * 109.47610 * 59.99944 * 16 15 14 37 37 H 1.09000 * 109.47256 * 299.99285 * 16 15 14 38 38 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 41 41 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 42 42 H 1.07999 * 119.99968 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 6 2.0400 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 6 2.1332 -0.8517 4.0841 15 6 1.7073 -0.2503 5.4249 16 6 2.2953 -1.0819 6.5665 17 6 1.8763 -0.4892 7.8873 18 6 0.7066 -0.9085 8.4931 19 6 0.3226 -0.3652 9.7048 20 6 1.1085 0.5969 10.3110 21 6 2.2754 1.0201 9.7027 22 6 2.6618 0.4735 8.4932 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 0.7082 1.1608 -3.4843 30 1 3.1301 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 3.2208 -0.8481 4.0130 33 1 1.7678 -1.8762 4.0133 34 1 0.6196 -0.2542 5.4958 35 1 2.0723 0.7743 5.4958 36 1 3.3830 -1.0784 6.4959 37 1 1.9299 -2.1063 6.4955 38 1 0.0928 -1.6606 8.0196 39 1 -0.5914 -0.6925 10.1778 40 1 0.8086 1.0210 11.2579 41 1 2.8872 1.7750 10.1741 42 1 3.5760 0.8005 8.0203 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568271177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:05 Heat of formation + Delta-G solvation = -17.539863 kcal Electronic energy + Delta-G solvation = -18367.228191 eV Core-core repulsion = 15629.716567 eV Total energy + Delta-G solvation = -2737.511624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15593 -37.82691 -36.07340 -33.50888 -32.00353 -31.72783 -28.21791 -27.55770 -27.21078 -27.10946 -23.42193 -23.24664 -21.68620 -20.77032 -17.96578 -17.69397 -16.94544 -16.61356 -16.59494 -15.95119 -15.57822 -15.41309 -14.86293 -14.86069 -14.34754 -14.22410 -14.10258 -13.51393 -13.39296 -13.28879 -13.07644 -12.86087 -12.67962 -12.62905 -12.33637 -12.21875 -11.99853 -11.97977 -11.70158 -11.58399 -11.41510 -11.24822 -11.01682 -10.39150 -10.34493 -9.78347 -9.55541 -8.43542 -8.00146 -6.18508 0.46076 0.53780 0.93920 1.44464 1.44802 1.52135 1.91719 2.46401 2.91742 3.22269 3.73743 3.89634 4.09726 4.18838 4.27250 4.33134 4.35891 4.37874 4.45263 4.46425 4.65194 4.71225 4.76616 4.78201 4.86061 4.95558 5.08123 5.09113 5.18442 5.23921 5.26015 5.26148 5.31836 5.46651 5.61708 5.66122 5.66400 5.66964 5.77432 6.10708 6.17191 6.21832 6.41933 6.87065 7.49183 8.98612 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.050242 B = 0.002622 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.166538 B =10675.402197 C =10736.251959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.073 3.927 3 C -0.120 4.120 4 C -0.526 4.526 5 H 0.051 0.949 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.045 4.045 13 S -0.300 6.300 14 C -0.083 4.083 15 C -0.084 4.084 16 C -0.069 4.069 17 C -0.092 4.092 18 C -0.131 4.131 19 C -0.129 4.129 20 C -0.135 4.135 21 C -0.129 4.129 22 C -0.131 4.131 23 H 0.031 0.969 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.259 0.741 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -2.687 23.220 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.069 0.931 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.193 4.193 13 S -0.072 6.072 14 C -0.231 4.231 15 C -0.122 4.122 16 C -0.108 4.108 17 C -0.092 4.092 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.146 4.146 22 C -0.149 4.149 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.183 -1.673 23.134 23.225 hybrid contribution 0.976 -1.379 -1.281 2.119 sum 2.159 -3.051 21.854 22.171 Atomic orbital electron populations 1.21684 0.97726 0.98511 0.99841 1.17954 0.92753 0.92478 0.89650 1.21685 0.97818 0.98418 0.99839 1.21335 1.31741 1.12213 0.91299 0.93087 1.25586 0.95172 0.95618 1.01345 1.69958 1.37112 1.23611 1.23633 0.85738 0.78684 0.78765 0.79158 1.19906 1.21100 1.19916 1.23480 1.01455 1.00309 0.94060 1.86892 1.71915 1.45888 1.02531 1.23436 1.03231 1.01337 0.95077 1.21173 1.01123 0.99433 0.90487 1.20570 1.01567 0.99126 0.89556 1.20042 0.95446 0.97294 0.96449 1.21321 0.96556 1.00894 0.96155 1.21447 1.00407 0.97172 0.95625 1.21466 0.95183 0.97773 1.00883 1.21448 0.97383 1.00180 0.95639 1.21320 1.00418 0.97003 0.96184 0.94988 0.92430 0.96054 0.96053 0.92437 0.94986 0.93103 0.91760 0.91757 0.89778 0.89784 0.91757 0.91755 0.89955 0.89951 0.85286 0.84454 0.84303 0.84453 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.01 71.98 0.58 -5.36 16 2 C 0.07 3.58 0.52 -52.92 -0.03 3.56 16 3 C -0.12 -5.93 8.01 71.98 0.58 -5.36 16 4 C -0.53 -28.27 8.01 25.60 0.21 -28.07 16 5 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 6 C 0.02 1.20 5.15 84.65 0.44 1.64 16 7 N -0.90 -50.69 9.35 21.45 0.20 -50.49 16 8 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 C -0.04 -1.87 4.88 71.98 0.35 -1.52 16 13 S -0.30 -10.87 18.79 -56.49 -1.06 -11.93 16 14 C -0.08 -2.13 5.94 71.98 0.43 -1.71 16 15 C -0.08 -1.84 5.20 30.59 0.16 -1.68 16 16 C -0.07 -1.21 5.34 29.85 0.16 -1.05 16 17 C -0.09 -1.72 5.13 -19.86 -0.10 -1.83 16 18 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 19 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 20 C -0.14 -2.07 10.05 22.27 0.22 -1.84 16 21 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 22 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 23 H 0.03 1.47 6.91 -2.39 -0.02 1.46 16 24 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 28 H 0.03 1.47 6.91 -2.39 -0.02 1.46 16 29 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.08 1.29 8.09 -2.38 -0.02 1.27 16 37 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 38 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -59.10 348.37 5.99 -53.11 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.95 Total: 15.51 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 3.87 Total: -51.17 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.20 Total: -50.49 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: -10.87 SS G_CDS: -1.06 Total: -11.93 kcal Total: -59.10 5.99 -53.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568271177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.571 kcal (2) G-P(sol) polarization free energy of solvation -59.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds