Wall clock time and date at job start Tue Mar 31 2020 00:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46919 * 2 1 4 4 H 1.09005 * 109.46629 * 177.48217 * 3 2 1 5 5 C 1.50697 * 109.47194 * 57.48207 * 3 2 1 6 6 H 1.07998 * 119.99735 * 239.99715 * 5 3 2 7 7 C 1.37878 * 120.00355 * 59.99659 * 5 3 2 8 8 N 1.31516 * 119.99885 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00100 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46972 * 90.00225 * 9 7 5 11 11 H 1.48506 * 109.46987 * 209.99979 * 9 7 5 12 12 H 1.48493 * 109.47222 * 329.99979 * 9 7 5 13 13 N 1.46900 * 109.47018 * 297.47714 * 3 2 1 14 14 C 1.46895 * 111.00179 * 274.85532 * 13 3 2 15 15 H 1.08998 * 109.47260 * 34.02138 * 14 13 3 16 16 C 1.53002 * 109.47278 * 274.02252 * 14 13 3 17 17 C 1.50695 * 109.47182 * 154.02240 * 14 13 3 18 18 O 1.21261 * 120.00020 * 0.02562 * 17 14 13 19 19 N 1.34783 * 120.00238 * 179.97438 * 17 14 13 20 20 C 1.38931 * 120.00112 * 179.97438 * 19 17 14 21 21 N 1.32405 * 119.20470 * 359.73606 * 20 19 17 22 22 C 1.32277 * 120.75389 * 179.75533 * 21 20 19 23 23 C 1.38617 * 119.18066 * 0.50819 * 22 21 20 24 24 C 1.38617 * 118.53878 * 359.74450 * 23 22 21 25 25 N 1.32276 * 119.17824 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47554 * 174.52842 * 1 2 3 27 27 H 1.09006 * 109.47248 * 294.52954 * 1 2 3 28 28 H 1.08997 * 109.47183 * 54.52512 * 1 2 3 29 29 H 1.08996 * 109.46859 * 239.99974 * 2 1 3 30 30 H 1.09003 * 109.46744 * 119.99810 * 2 1 3 31 31 H 0.96999 * 120.00156 * 179.97438 * 8 7 5 32 32 H 1.00905 * 110.99322 * 150.89911 * 13 3 2 33 33 H 1.09005 * 109.47037 * 300.00457 * 16 14 13 34 34 H 1.09003 * 109.47201 * 59.99942 * 16 14 13 35 35 H 1.08995 * 109.47291 * 180.02562 * 16 14 13 36 36 H 0.97000 * 119.99930 * 0.02562 * 19 17 14 37 37 H 1.07998 * 120.41327 * 180.25837 * 22 21 20 38 38 H 1.08000 * 120.73244 * 179.77534 * 23 22 21 39 39 H 1.07992 * 120.40977 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0451 5 6 1.4873 2.1707 1.1980 6 1 0.8713 3.0471 1.0604 7 6 1.7680 1.7182 2.4698 8 7 2.5185 0.6513 2.6374 9 14 1.0835 2.6213 3.9548 10 1 -0.2407 2.0524 4.3131 11 1 2.0151 2.4667 5.1010 12 1 0.9319 4.0626 3.6311 13 7 1.6007 2.1172 -1.2288 14 6 2.5329 1.8577 -2.3339 15 1 2.9400 0.8512 -2.2371 16 6 3.6740 2.8759 -2.2884 17 6 1.8026 1.9800 -3.6464 18 8 0.6220 2.2566 -3.6598 19 7 2.4618 1.7830 -4.8054 20 6 1.7883 1.8953 -6.0154 21 7 0.4978 2.1913 -6.0114 22 6 -0.1723 2.3104 -7.1456 23 6 0.4907 2.1108 -8.3465 24 6 1.8405 1.7973 -8.3136 25 7 2.4512 1.6981 -7.1444 26 1 -0.3634 -1.0230 -0.0980 27 1 -0.3634 0.4267 0.9350 28 1 -0.3633 0.5964 -0.8369 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.7163 0.3331 3.5321 32 1 1.4873 3.1082 -1.0763 33 1 3.2669 3.8824 -2.3852 34 1 4.2023 2.7874 -1.3391 35 1 4.3655 2.6836 -3.1087 36 1 3.4062 1.5621 -4.7947 37 1 -1.2240 2.5561 -7.1361 38 1 -0.0328 2.1982 -9.2871 39 1 2.3867 1.6359 -9.2311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584002543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:32 Heat of formation + Delta-G solvation = 34.090428 kcal Electronic energy + Delta-G solvation = -21603.886679 eV Core-core repulsion = 18354.613450 eV Total energy + Delta-G solvation = -3249.273230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27726 -39.37007 -36.45161 -34.84382 -33.75983 -33.36062 -31.31621 -30.72851 -28.58347 -25.89917 -25.03899 -24.62009 -23.30276 -22.76660 -20.32493 -19.01778 -18.46411 -17.52204 -16.64031 -16.00635 -15.73939 -15.61563 -14.96755 -14.77622 -14.29675 -14.02812 -13.63137 -13.57146 -13.43861 -12.89433 -12.45062 -12.07692 -11.90957 -11.72601 -11.25880 -11.10494 -10.95155 -10.93245 -10.80990 -10.72484 -10.36125 -10.08030 -9.88421 -9.51989 -9.34451 -8.93792 -8.80132 -8.72148 -8.47796 -7.28351 -6.03183 -4.07737 0.85570 1.03781 2.59240 2.91792 3.30644 3.37372 3.40560 3.85743 4.03650 4.36907 4.43828 4.54125 4.94318 5.04055 5.11412 5.13660 5.29442 5.39826 5.50921 5.61887 5.89790 5.97210 6.06519 6.34556 6.46398 6.54321 6.73814 6.89309 6.95464 7.08891 7.26912 7.29188 7.49813 7.74812 7.79309 7.83149 8.15294 8.23232 8.34263 8.44369 8.61656 9.00196 9.56896 11.03083 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.003687 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.636262 B = 7591.741991 C = 7752.862476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.005 0.995 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.661 5.661 14 C 0.077 3.923 15 H 0.102 0.898 16 C -0.177 4.177 17 C 0.508 3.492 18 O -0.440 6.440 19 N -0.646 5.646 20 C 0.543 3.457 21 N -0.502 5.502 22 C 0.178 3.822 23 C -0.275 4.275 24 C 0.177 3.823 25 N -0.557 5.557 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.007 0.993 30 H 0.086 0.914 31 H 0.261 0.739 32 H 0.340 0.660 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.419 0.581 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 1.906 -19.359 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.293 5.293 14 C -0.039 4.039 15 H 0.120 0.880 16 C -0.236 4.236 17 C 0.292 3.708 18 O -0.303 6.303 19 N -0.298 5.298 20 C 0.187 3.813 21 N -0.222 5.222 22 C 0.009 3.991 23 C -0.299 4.299 24 C 0.009 3.991 25 N -0.278 5.278 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.257 0.743 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.660 1.411 -18.290 18.357 hybrid contribution 0.489 0.834 0.127 0.975 sum 1.148 2.245 -18.163 18.337 Atomic orbital electron populations 1.21449 0.97309 0.97212 1.01846 1.21459 0.95403 0.98077 0.99148 1.19191 0.93496 0.91625 0.84534 0.97763 1.21138 1.31636 1.12054 0.90148 0.92148 1.24860 0.95052 0.95026 0.98816 1.69882 1.37519 1.23218 1.22181 0.86560 0.78840 0.80136 0.82257 1.20630 1.21382 1.19944 1.60348 1.46212 1.16626 1.06095 1.21399 0.91659 1.00989 0.89806 0.88031 1.22489 0.98457 0.99532 1.03128 1.21576 0.88325 0.76645 0.84210 1.90778 1.14540 1.39401 1.85628 1.43735 1.14288 1.69225 1.02524 1.19674 0.86101 0.89383 0.86119 1.68589 1.06820 1.16349 1.30474 1.23262 1.00356 0.88706 0.86733 1.22719 0.97434 1.08729 1.01018 1.22925 0.91885 0.89347 0.94900 1.67829 1.40517 1.21186 0.98246 0.96971 0.92917 0.93047 0.97388 0.89553 0.92956 0.84118 0.92188 0.90481 0.92719 0.74302 0.81385 0.83695 0.81391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.45 37.16 0.35 -2.49 16 2 C -0.10 -2.47 5.55 -26.73 -0.15 -2.62 16 3 C 0.22 5.23 2.11 -68.86 -0.15 5.09 16 4 H 0.00 0.12 7.19 -51.93 -0.37 -0.25 16 5 C -0.51 -13.47 7.31 -34.44 -0.25 -13.72 16 6 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.61 11.35 55.43 0.63 -23.98 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.66 -13.86 4.79 -102.17 -0.49 -14.35 16 14 C 0.08 1.30 2.80 -68.87 -0.19 1.11 16 15 H 0.10 1.71 7.11 -51.93 -0.37 1.34 16 16 C -0.18 -2.50 9.04 37.16 0.34 -2.16 16 17 C 0.51 8.79 7.19 -10.99 -0.08 8.71 16 18 O -0.44 -9.29 14.63 5.57 0.08 -9.21 16 19 N -0.65 -9.23 5.29 -13.07 -0.07 -9.30 16 20 C 0.54 8.11 8.38 -322.27 -2.70 5.40 16 21 N -0.50 -7.96 7.87 -13.83 -0.11 -8.06 16 22 C 0.18 2.01 11.30 -17.22 -0.19 1.81 16 23 C -0.27 -2.32 10.17 -39.30 -0.40 -2.72 16 24 C 0.18 1.63 11.30 -17.22 -0.19 1.43 16 25 N -0.56 -7.01 10.46 -13.84 -0.14 -7.15 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 1.31 7.36 -51.93 -0.38 0.93 16 28 H 0.05 1.22 7.52 -51.93 -0.39 0.83 16 29 H 0.01 0.17 7.42 -51.93 -0.39 -0.22 16 30 H 0.09 2.29 6.14 -51.93 -0.32 1.97 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.34 7.18 7.94 -39.29 -0.31 6.86 16 33 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 34 H 0.08 1.18 7.50 -51.93 -0.39 0.80 16 35 H 0.05 0.60 7.56 -51.93 -0.39 0.21 16 36 H 0.42 4.70 8.23 -40.82 -0.34 4.36 16 37 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -32.37 325.50 -9.23 -41.60 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.30 Total: 8.04 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -3.71 Total: 1.48 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.18 Total: -62.84 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.37 -9.23 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.695 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds