Wall clock time and date at job start Tue Mar 31 2020 00:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46919 * 2 1 4 4 H 1.09005 * 109.46629 * 177.48217 * 3 2 1 5 5 C 1.50697 * 109.47194 * 57.48207 * 3 2 1 6 6 H 1.07998 * 119.99735 * 239.99715 * 5 3 2 7 7 C 1.37878 * 120.00355 * 59.99659 * 5 3 2 8 8 N 1.31516 * 119.99885 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00100 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46972 * 90.00225 * 9 7 5 11 11 H 1.48506 * 109.46987 * 209.99979 * 9 7 5 12 12 H 1.48493 * 109.47222 * 329.99979 * 9 7 5 13 13 N 1.46900 * 109.47018 * 297.47714 * 3 2 1 14 14 C 1.46895 * 111.00179 * 274.85532 * 13 3 2 15 15 H 1.08998 * 109.47260 * 34.02138 * 14 13 3 16 16 C 1.53002 * 109.47278 * 274.02252 * 14 13 3 17 17 C 1.50695 * 109.47182 * 154.02240 * 14 13 3 18 18 O 1.21261 * 120.00020 * 0.02562 * 17 14 13 19 19 N 1.34783 * 120.00238 * 179.97438 * 17 14 13 20 20 C 1.38931 * 120.00112 * 179.97438 * 19 17 14 21 21 N 1.32405 * 119.20470 * 359.73606 * 20 19 17 22 22 C 1.32277 * 120.75389 * 179.75533 * 21 20 19 23 23 C 1.38617 * 119.18066 * 0.50819 * 22 21 20 24 24 C 1.38617 * 118.53878 * 359.74450 * 23 22 21 25 25 N 1.32276 * 119.17824 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47554 * 174.52842 * 1 2 3 27 27 H 1.09006 * 109.47248 * 294.52954 * 1 2 3 28 28 H 1.08997 * 109.47183 * 54.52512 * 1 2 3 29 29 H 1.08996 * 109.46859 * 239.99974 * 2 1 3 30 30 H 1.09003 * 109.46744 * 119.99810 * 2 1 3 31 31 H 0.96999 * 120.00156 * 179.97438 * 8 7 5 32 32 H 1.00905 * 110.99322 * 150.89911 * 13 3 2 33 33 H 1.09005 * 109.47037 * 300.00457 * 16 14 13 34 34 H 1.09003 * 109.47201 * 59.99942 * 16 14 13 35 35 H 1.08995 * 109.47291 * 180.02562 * 16 14 13 36 36 H 0.97000 * 119.99930 * 0.02562 * 19 17 14 37 37 H 1.07998 * 120.41327 * 180.25837 * 22 21 20 38 38 H 1.08000 * 120.73244 * 179.77534 * 23 22 21 39 39 H 1.07992 * 120.40977 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0451 5 6 1.4873 2.1707 1.1980 6 1 0.8713 3.0471 1.0604 7 6 1.7680 1.7182 2.4698 8 7 2.5185 0.6513 2.6374 9 14 1.0835 2.6213 3.9548 10 1 -0.2407 2.0524 4.3131 11 1 2.0151 2.4667 5.1010 12 1 0.9319 4.0626 3.6311 13 7 1.6007 2.1172 -1.2288 14 6 2.5329 1.8577 -2.3339 15 1 2.9400 0.8512 -2.2371 16 6 3.6740 2.8759 -2.2884 17 6 1.8026 1.9800 -3.6464 18 8 0.6220 2.2566 -3.6598 19 7 2.4618 1.7830 -4.8054 20 6 1.7883 1.8953 -6.0154 21 7 0.4978 2.1913 -6.0114 22 6 -0.1723 2.3104 -7.1456 23 6 0.4907 2.1108 -8.3465 24 6 1.8405 1.7973 -8.3136 25 7 2.4512 1.6981 -7.1444 26 1 -0.3634 -1.0230 -0.0980 27 1 -0.3634 0.4267 0.9350 28 1 -0.3633 0.5964 -0.8369 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.7163 0.3331 3.5321 32 1 1.4873 3.1082 -1.0763 33 1 3.2669 3.8824 -2.3852 34 1 4.2023 2.7874 -1.3391 35 1 4.3655 2.6836 -3.1087 36 1 3.4062 1.5621 -4.7947 37 1 -1.2240 2.5561 -7.1361 38 1 -0.0328 2.1982 -9.2871 39 1 2.3867 1.6359 -9.2311 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584002543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:31 Heat of formation + Delta-G solvation = 12.990326 kcal Electronic energy + Delta-G solvation = -21604.801648 eV Core-core repulsion = 18354.613450 eV Total energy + Delta-G solvation = -3250.188199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.24319 -40.61608 -38.13182 -36.02796 -35.11085 -34.64055 -33.09374 -31.85761 -30.17080 -27.73609 -26.15902 -25.54865 -25.14791 -23.99373 -21.66668 -20.72581 -19.59806 -18.81220 -18.10558 -17.26375 -16.81268 -16.77585 -16.62942 -15.91942 -15.83014 -15.26873 -15.13764 -14.96167 -14.64507 -14.28804 -13.90604 -13.85905 -13.51556 -13.30666 -12.82758 -12.57458 -12.55568 -12.30263 -12.06887 -11.97945 -11.89850 -11.84071 -11.73318 -11.33909 -10.83727 -10.76551 -10.50993 -9.95203 -9.68028 -8.96695 -8.08235 -6.18266 -0.03382 0.24003 1.42753 1.45130 1.51504 1.54674 1.66626 2.44700 2.94471 3.16978 3.21456 3.41148 3.66569 3.84247 3.93338 4.11905 4.17895 4.31710 4.44633 4.61074 4.71762 4.78670 4.79264 4.88334 4.95163 5.11901 5.16750 5.31636 5.38478 5.54451 5.55653 5.73343 5.80343 5.86365 6.05524 6.16172 6.28363 6.49062 6.76809 7.00772 7.11604 7.32888 7.49631 8.97095 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.003687 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.636262 B = 7591.741991 C = 7752.862476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C 0.228 3.772 4 H -0.014 1.014 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.669 5.669 14 C 0.077 3.923 15 H 0.104 0.896 16 C -0.166 4.166 17 C 0.517 3.483 18 O -0.487 6.487 19 N -0.636 5.636 20 C 0.514 3.486 21 N -0.551 5.551 22 C 0.153 3.847 23 C -0.246 4.246 24 C 0.169 3.831 25 N -0.563 5.563 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.336 0.664 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.432 0.568 37 H 0.188 0.812 38 H 0.190 0.810 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 2.145 -21.816 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C 0.120 3.880 4 H 0.004 0.996 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.207 1.207 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.300 5.300 14 C -0.038 4.038 15 H 0.122 0.878 16 C -0.225 4.225 17 C 0.302 3.698 18 O -0.354 6.354 19 N -0.289 5.289 20 C 0.158 3.842 21 N -0.272 5.272 22 C -0.012 4.012 23 C -0.269 4.269 24 C 0.003 3.997 25 N -0.284 5.284 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.272 0.728 37 H 0.205 0.795 38 H 0.207 0.793 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.896 1.651 -20.816 20.900 hybrid contribution 0.407 0.746 0.661 1.076 sum 1.303 2.397 -20.155 20.339 Atomic orbital electron populations 1.21298 0.96787 0.98086 1.00361 1.21360 0.95741 0.98079 0.98557 1.18928 0.92104 0.91645 0.85289 0.99632 1.21382 1.31400 1.11976 0.91340 0.92930 1.25515 0.95378 0.95717 1.01143 1.69990 1.38411 1.24220 1.22604 0.85677 0.78053 0.79208 0.79399 1.20692 1.20944 1.19486 1.60192 1.47853 1.16137 1.05833 1.21429 0.91792 1.01957 0.88620 0.87824 1.22363 0.97786 0.98459 1.03872 1.21377 0.87629 0.75898 0.84883 1.90755 1.16278 1.41929 1.86401 1.43343 1.14698 1.68803 1.02035 1.19739 0.86383 0.91407 0.86655 1.68474 1.07755 1.17814 1.33144 1.23777 1.01445 0.89111 0.86892 1.23167 0.97100 1.05086 1.01588 1.23799 0.92722 0.88038 0.95123 1.67883 1.40758 1.21201 0.98570 0.95034 0.94933 0.93648 0.96032 0.91926 0.92984 0.84531 0.92271 0.91781 0.89078 0.72822 0.79496 0.79304 0.77054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.11 9.45 71.98 0.68 -4.43 16 2 C -0.10 -4.82 5.55 30.60 0.17 -4.65 16 3 C 0.23 11.17 2.11 44.17 0.09 11.26 16 4 H -0.01 -0.72 7.19 -2.38 -0.02 -0.74 16 5 C -0.52 -28.03 7.31 25.60 0.19 -27.85 16 6 H 0.05 2.85 7.62 -2.91 -0.02 2.83 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -51.21 11.35 21.45 0.24 -50.97 16 9 Si 0.95 43.50 29.54 68.60 2.03 45.53 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.67 -28.64 4.79 -477.17 -2.29 -30.93 16 14 C 0.08 2.61 2.80 44.17 0.12 2.73 16 15 H 0.10 3.48 7.11 -2.39 -0.02 3.46 16 16 C -0.17 -4.58 9.04 71.98 0.65 -3.93 16 17 C 0.52 18.02 7.19 87.65 0.63 18.65 16 18 O -0.49 -21.07 14.63 -2.97 -0.04 -21.11 16 19 N -0.64 -17.89 5.29 -313.67 -1.66 -19.55 16 20 C 0.51 14.99 8.38 261.30 2.19 17.18 16 21 N -0.55 -17.33 7.87 -197.68 -1.56 -18.88 16 22 C 0.15 3.23 11.30 84.72 0.96 4.19 16 23 C -0.25 -3.26 10.17 22.45 0.23 -3.03 16 24 C 0.17 2.51 11.30 84.72 0.96 3.47 16 25 N -0.56 -13.03 10.46 -197.69 -2.07 -15.10 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.03 1.63 7.36 -2.38 -0.02 1.61 16 28 H 0.04 2.17 7.52 -2.39 -0.02 2.16 16 29 H 0.02 0.96 7.42 -2.39 -0.02 0.94 16 30 H 0.06 3.38 6.14 -2.39 -0.01 3.36 16 31 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.34 14.61 7.94 -89.69 -0.71 13.90 16 33 H 0.06 1.65 8.13 -2.38 -0.02 1.63 16 34 H 0.06 1.96 7.50 -2.39 -0.02 1.94 16 35 H 0.09 1.83 7.56 -2.39 -0.02 1.81 16 36 H 0.43 9.21 8.23 -92.71 -0.76 8.45 16 37 H 0.19 2.88 8.06 -2.91 -0.02 2.85 16 38 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -72.21 325.50 1.58 -70.63 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -0.39 Total: 25.15 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.32 Total: 15.24 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -7.33 Total: -135.43 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.04 Total: -21.11 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -72.21 1.58 -70.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.622 kcal (2) G-P(sol) polarization free energy of solvation -72.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds