Wall clock time and date at job start Tue Mar 31 2020 00:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46936 * 2 1 4 4 H 1.09005 * 109.47371 * 179.09077 * 3 2 1 5 5 C 1.50699 * 109.47353 * 299.08530 * 3 2 1 6 6 H 1.08009 * 119.99840 * 119.99940 * 5 3 2 7 7 C 1.37875 * 120.00316 * 300.00816 * 5 3 2 8 8 N 1.31517 * 120.00341 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 119.99863 * 359.97438 * 7 5 3 10 10 H 1.48510 * 109.47064 * 90.00606 * 9 7 5 11 11 H 1.48500 * 109.47384 * 210.00171 * 9 7 5 12 12 H 1.48496 * 109.47543 * 330.00711 * 9 7 5 13 13 N 1.46900 * 109.47515 * 59.09157 * 3 2 1 14 14 C 1.46893 * 111.00232 * 86.62341 * 13 3 2 15 15 H 1.09004 * 109.46920 * 326.24680 * 14 13 3 16 16 C 1.52998 * 109.47438 * 86.24171 * 14 13 3 17 17 C 1.50702 * 109.47267 * 206.24646 * 14 13 3 18 18 O 1.21264 * 119.99651 * 0.02562 * 17 14 13 19 19 N 1.34778 * 120.00203 * 179.97438 * 17 14 13 20 20 C 1.38937 * 120.00043 * 179.97438 * 19 17 14 21 21 N 1.32403 * 119.20143 * 359.73646 * 20 19 17 22 22 C 1.32275 * 120.74647 * 179.76046 * 21 20 19 23 23 C 1.38614 * 119.18712 * 0.49932 * 22 21 20 24 24 C 1.38611 * 118.53458 * 359.75179 * 23 22 21 25 25 N 1.32279 * 119.18525 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47057 * 56.20838 * 1 2 3 27 27 H 1.08998 * 109.47072 * 176.20738 * 1 2 3 28 28 H 1.08999 * 109.47327 * 296.21093 * 1 2 3 29 29 H 1.08993 * 109.47423 * 239.99973 * 2 1 3 30 30 H 1.08993 * 109.46888 * 119.99688 * 2 1 3 31 31 H 0.96998 * 120.00362 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00158 * 210.57572 * 13 3 2 33 33 H 1.08998 * 109.47592 * 179.97438 * 16 14 13 34 34 H 1.08999 * 109.47205 * 300.00447 * 16 14 13 35 35 H 1.09004 * 109.46650 * 60.00344 * 16 14 13 36 36 H 0.97004 * 119.99640 * 0.02562 * 19 17 14 37 37 H 1.08000 * 120.40797 * 180.25617 * 22 21 20 38 38 H 1.07994 * 120.73516 * 179.77540 * 23 22 21 39 39 H 1.07998 * 120.40986 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0163 5 6 1.5562 2.1463 -1.2416 6 1 0.9339 3.0250 -1.1565 7 6 1.9079 1.6686 -2.4862 8 7 1.4854 2.2826 -3.5698 9 14 2.9847 0.1494 -2.6334 10 1 2.1271 -1.0620 -2.6852 11 1 3.7951 0.2353 -3.8748 12 1 3.8877 0.0667 -1.4575 13 7 1.5325 2.1413 1.1883 14 6 2.4195 1.9331 2.3404 15 1 2.8549 0.9352 2.2881 16 6 3.5366 2.9785 2.3196 17 6 1.6276 2.0695 3.6153 18 8 0.4411 2.3154 3.5686 19 7 2.2379 1.9172 4.8073 20 6 1.5078 2.0435 5.9827 21 7 0.2146 2.3189 5.9134 22 6 -0.5106 2.4411 7.0129 23 6 0.1016 2.2875 8.2470 24 6 1.4581 2.0047 8.2826 25 7 2.1232 1.8902 7.1450 26 1 -0.3633 0.5716 -0.8541 27 1 -0.3633 -1.0254 -0.0680 28 1 -0.3634 0.4539 0.9220 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7331 1.9468 -4.4454 32 1 1.4057 3.1250 1.0027 33 1 4.1946 2.8243 3.1748 34 1 4.1094 2.8798 1.3975 35 1 3.1012 3.9764 2.3719 36 1 3.1869 1.7201 4.8446 37 1 -1.5659 2.6617 6.9499 38 1 -0.4658 2.3856 9.1606 39 1 1.9656 1.8786 9.2276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584002544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:34 Heat of formation + Delta-G solvation = 42.566357 kcal Electronic energy + Delta-G solvation = -21682.896866 eV Core-core repulsion = 18433.991180 eV Total energy + Delta-G solvation = -3248.905686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.33639 -39.47184 -36.72970 -34.92296 -33.81219 -33.43242 -31.68146 -30.94011 -28.78998 -26.32232 -25.12223 -24.68474 -23.13300 -22.97376 -20.42704 -19.33636 -18.59964 -17.56883 -16.72335 -16.07016 -16.01173 -15.68704 -15.34140 -14.84837 -14.32655 -14.18456 -13.69445 -13.59433 -13.44853 -13.11513 -12.72918 -12.63305 -12.20018 -11.97208 -11.36309 -11.22432 -11.05631 -10.99471 -10.88032 -10.64272 -10.53608 -10.25074 -10.04948 -9.63364 -9.32991 -9.03343 -8.96194 -8.78407 -8.59190 -7.53349 -6.10930 -4.10197 0.80503 0.99018 2.51141 2.82746 3.26083 3.33560 3.36522 3.80232 3.98439 4.33009 4.36671 4.48839 4.86938 4.94208 4.99798 5.03255 5.20576 5.28032 5.36218 5.56917 5.74490 5.91048 5.93032 6.10845 6.22264 6.27243 6.40336 6.48509 6.68217 6.88636 6.93056 7.04070 7.14748 7.21856 7.52629 7.58941 7.83159 8.09384 8.26831 8.37039 8.56932 8.94333 9.50585 11.01815 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036743 B = 0.003900 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.869445 B = 7178.116317 C = 7351.797160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.188 3.812 4 H 0.005 0.995 5 C -0.514 4.514 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.651 5.651 14 C 0.074 3.926 15 H 0.101 0.899 16 C -0.179 4.179 17 C 0.508 3.492 18 O -0.437 6.437 19 N -0.646 5.646 20 C 0.542 3.458 21 N -0.502 5.502 22 C 0.178 3.822 23 C -0.273 4.273 24 C 0.177 3.823 25 N -0.556 5.556 26 H 0.067 0.933 27 H 0.019 0.981 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.349 0.651 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.419 0.581 37 H 0.170 0.830 38 H 0.146 0.854 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.739 -1.140 22.274 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.080 3.920 4 H 0.022 0.978 5 C -0.552 4.552 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.283 5.283 14 C -0.041 4.041 15 H 0.119 0.881 16 C -0.238 4.238 17 C 0.292 3.708 18 O -0.300 6.300 19 N -0.298 5.298 20 C 0.187 3.813 21 N -0.222 5.222 22 C 0.010 3.990 23 C -0.298 4.298 24 C 0.009 3.991 25 N -0.277 5.277 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.257 0.743 37 H 0.187 0.813 38 H 0.164 0.836 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.949 -1.538 21.136 21.282 hybrid contribution 1.364 -0.418 0.506 1.514 sum 3.313 -1.956 21.643 21.982 Atomic orbital electron populations 1.21478 0.95332 0.98282 1.03298 1.21778 0.97703 0.98013 0.97649 1.19625 0.92908 0.91283 0.88222 0.97790 1.20986 1.32582 1.13372 0.88243 0.90177 1.24881 0.95524 0.96706 0.95698 1.69883 1.45260 1.40429 0.97824 0.86873 0.80776 0.83884 0.76779 1.20372 1.22577 1.19413 1.60149 1.46500 1.17895 1.03778 1.21438 0.91681 1.00826 0.90184 0.88134 1.22501 0.98661 0.99570 1.03045 1.21444 0.88984 0.76777 0.83566 1.90796 1.14412 1.39453 1.85388 1.43682 1.13290 1.69980 1.02833 1.19650 0.86204 0.89526 0.85962 1.68585 1.05270 1.16150 1.32207 1.23270 1.00330 0.88521 0.86887 1.22728 0.97599 1.08736 1.00703 1.22931 0.91327 0.89209 0.95586 1.67828 1.40788 1.21083 0.98050 0.91360 0.96209 0.92280 0.93989 0.95322 0.92565 0.83080 0.92529 0.90517 0.91823 0.74312 0.81321 0.83638 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.52 37.16 0.35 -2.43 16 2 C -0.11 -2.50 5.28 -26.73 -0.14 -2.65 16 3 C 0.19 4.25 1.69 -68.87 -0.12 4.13 16 4 H 0.00 0.10 6.26 -51.93 -0.33 -0.22 16 5 C -0.51 -13.80 7.89 -34.44 -0.27 -14.07 16 6 H 0.08 2.36 7.84 -52.48 -0.41 1.95 16 7 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 9 Si 0.89 21.55 24.38 -169.99 -4.14 17.41 16 10 H -0.28 -6.67 6.86 56.52 0.39 -6.29 16 11 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.65 -13.04 4.82 -102.17 -0.49 -13.53 16 14 C 0.07 1.17 2.80 -68.87 -0.19 0.98 16 15 H 0.10 1.52 7.24 -51.93 -0.38 1.14 16 16 C -0.18 -2.36 9.04 37.16 0.34 -2.02 16 17 C 0.51 8.34 7.19 -10.98 -0.08 8.26 16 18 O -0.44 -8.89 14.63 5.57 0.08 -8.81 16 19 N -0.65 -8.73 5.29 -13.07 -0.07 -8.80 16 20 C 0.54 7.77 8.38 -322.26 -2.70 5.07 16 21 N -0.50 -7.69 7.87 -13.83 -0.11 -7.80 16 22 C 0.18 1.94 11.30 -17.22 -0.19 1.74 16 23 C -0.27 -2.20 10.17 -39.31 -0.40 -2.60 16 24 C 0.18 1.55 11.30 -17.22 -0.19 1.36 16 25 N -0.56 -6.71 10.46 -13.83 -0.14 -6.86 16 26 H 0.07 1.66 7.12 -51.93 -0.37 1.29 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.30 7.70 -51.93 -0.40 0.90 16 29 H 0.04 0.97 3.25 -51.93 -0.17 0.80 16 30 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.35 7.19 7.90 -39.29 -0.31 6.88 16 33 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 34 H 0.08 1.09 7.54 -51.93 -0.39 0.70 16 35 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 36 H 0.42 4.34 8.23 -40.82 -0.34 4.01 16 37 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -33.81 318.90 -8.17 -41.97 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.17 Total: 7.88 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -3.70 Total: -0.25 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.04 Total: -63.00 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.08 Total: -8.81 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.81 -8.17 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.540 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds