Wall clock time and date at job start Tue Mar 31 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46936 * 2 1 4 4 H 1.09005 * 109.47371 * 179.09077 * 3 2 1 5 5 C 1.50699 * 109.47353 * 299.08530 * 3 2 1 6 6 H 1.08009 * 119.99840 * 119.99940 * 5 3 2 7 7 C 1.37875 * 120.00316 * 300.00816 * 5 3 2 8 8 N 1.31517 * 120.00341 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 119.99863 * 359.97438 * 7 5 3 10 10 H 1.48510 * 109.47064 * 90.00606 * 9 7 5 11 11 H 1.48500 * 109.47384 * 210.00171 * 9 7 5 12 12 H 1.48496 * 109.47543 * 330.00711 * 9 7 5 13 13 N 1.46900 * 109.47515 * 59.09157 * 3 2 1 14 14 C 1.46893 * 111.00232 * 86.62341 * 13 3 2 15 15 H 1.09004 * 109.46920 * 326.24680 * 14 13 3 16 16 C 1.52998 * 109.47438 * 86.24171 * 14 13 3 17 17 C 1.50702 * 109.47267 * 206.24646 * 14 13 3 18 18 O 1.21264 * 119.99651 * 0.02562 * 17 14 13 19 19 N 1.34778 * 120.00203 * 179.97438 * 17 14 13 20 20 C 1.38937 * 120.00043 * 179.97438 * 19 17 14 21 21 N 1.32403 * 119.20143 * 359.73646 * 20 19 17 22 22 C 1.32275 * 120.74647 * 179.76046 * 21 20 19 23 23 C 1.38614 * 119.18712 * 0.49932 * 22 21 20 24 24 C 1.38611 * 118.53458 * 359.75179 * 23 22 21 25 25 N 1.32279 * 119.18525 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47057 * 56.20838 * 1 2 3 27 27 H 1.08998 * 109.47072 * 176.20738 * 1 2 3 28 28 H 1.08999 * 109.47327 * 296.21093 * 1 2 3 29 29 H 1.08993 * 109.47423 * 239.99973 * 2 1 3 30 30 H 1.08993 * 109.46888 * 119.99688 * 2 1 3 31 31 H 0.96998 * 120.00362 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00158 * 210.57572 * 13 3 2 33 33 H 1.08998 * 109.47592 * 179.97438 * 16 14 13 34 34 H 1.08999 * 109.47205 * 300.00447 * 16 14 13 35 35 H 1.09004 * 109.46650 * 60.00344 * 16 14 13 36 36 H 0.97004 * 119.99640 * 0.02562 * 19 17 14 37 37 H 1.08000 * 120.40797 * 180.25617 * 22 21 20 38 38 H 1.07994 * 120.73516 * 179.77540 * 23 22 21 39 39 H 1.07998 * 120.40986 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 0.0163 5 6 1.5562 2.1463 -1.2416 6 1 0.9339 3.0250 -1.1565 7 6 1.9079 1.6686 -2.4862 8 7 1.4854 2.2826 -3.5698 9 14 2.9847 0.1494 -2.6334 10 1 2.1271 -1.0620 -2.6852 11 1 3.7951 0.2353 -3.8748 12 1 3.8877 0.0667 -1.4575 13 7 1.5325 2.1413 1.1883 14 6 2.4195 1.9331 2.3404 15 1 2.8549 0.9352 2.2881 16 6 3.5366 2.9785 2.3196 17 6 1.6276 2.0695 3.6153 18 8 0.4411 2.3154 3.5686 19 7 2.2379 1.9172 4.8073 20 6 1.5078 2.0435 5.9827 21 7 0.2146 2.3189 5.9134 22 6 -0.5106 2.4411 7.0129 23 6 0.1016 2.2875 8.2470 24 6 1.4581 2.0047 8.2826 25 7 2.1232 1.8902 7.1450 26 1 -0.3633 0.5716 -0.8541 27 1 -0.3633 -1.0254 -0.0680 28 1 -0.3634 0.4539 0.9220 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.7331 1.9468 -4.4454 32 1 1.4057 3.1250 1.0027 33 1 4.1946 2.8243 3.1748 34 1 4.1094 2.8798 1.3975 35 1 3.1012 3.9764 2.3719 36 1 3.1869 1.7201 4.8446 37 1 -1.5659 2.6617 6.9499 38 1 -0.4658 2.3856 9.1606 39 1 1.9656 1.8786 9.2276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584002544.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:33 Heat of formation + Delta-G solvation = 18.202346 kcal Electronic energy + Delta-G solvation = -21683.953369 eV Core-core repulsion = 18433.991180 eV Total energy + Delta-G solvation = -3249.962189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24980 -40.64510 -38.32782 -36.03880 -35.10527 -34.64474 -33.60731 -31.90887 -30.27186 -28.12610 -26.16533 -25.54226 -25.01445 -24.06681 -21.73663 -20.92871 -19.63723 -18.85307 -18.25486 -17.51967 -16.94972 -16.78110 -16.69608 -15.97169 -15.69340 -15.35991 -15.17713 -14.95273 -14.82026 -14.59820 -14.29358 -14.03646 -13.65428 -13.33683 -12.89813 -12.56029 -12.45208 -12.38829 -12.08421 -12.03450 -11.95366 -11.89152 -11.84842 -11.23048 -10.96298 -10.83182 -10.66308 -9.96091 -9.68668 -9.09232 -8.26411 -6.29494 -0.03767 0.23228 1.34784 1.36547 1.47353 1.51001 1.66054 2.34045 2.94021 3.09016 3.14473 3.36879 3.55574 3.83763 3.92067 4.08197 4.13719 4.30978 4.36812 4.43191 4.45364 4.63708 4.72391 4.80404 4.87909 4.94532 5.11348 5.12614 5.20406 5.33131 5.39797 5.54240 5.63645 5.74639 5.92183 6.10114 6.15671 6.48740 6.64357 6.82051 7.10143 7.32715 7.35395 8.90166 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036743 B = 0.003900 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.869445 B = 7178.116317 C = 7351.797160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C 0.196 3.804 4 H 0.014 0.986 5 C -0.509 4.509 6 H 0.036 0.964 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.301 1.301 12 H -0.240 1.240 13 N -0.664 5.664 14 C 0.074 3.926 15 H 0.117 0.883 16 C -0.170 4.170 17 C 0.516 3.484 18 O -0.487 6.487 19 N -0.635 5.635 20 C 0.514 3.486 21 N -0.551 5.551 22 C 0.153 3.847 23 C -0.247 4.247 24 C 0.170 3.830 25 N -0.562 5.562 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.265 0.735 32 H 0.340 0.660 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.433 0.567 37 H 0.187 0.813 38 H 0.189 0.811 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 -2.799 25.763 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.154 4.154 3 C 0.087 3.913 4 H 0.031 0.969 5 C -0.548 4.548 6 H 0.054 0.946 7 C -0.180 4.180 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.229 1.229 12 H -0.164 1.164 13 N -0.295 5.295 14 C -0.040 4.040 15 H 0.135 0.865 16 C -0.229 4.229 17 C 0.301 3.699 18 O -0.354 6.354 19 N -0.288 5.288 20 C 0.158 3.842 21 N -0.272 5.272 22 C -0.012 4.012 23 C -0.270 4.270 24 C 0.003 3.997 25 N -0.283 5.283 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.273 0.727 37 H 0.204 0.796 38 H 0.206 0.794 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.656 -3.205 24.714 25.188 hybrid contribution 0.737 0.192 -0.354 0.840 sum 4.393 -3.013 24.360 24.936 Atomic orbital electron populations 1.21352 0.95740 0.99043 1.01367 1.21784 0.97368 0.97469 0.98759 1.19431 0.93063 0.91533 0.87278 0.96886 1.21210 1.31047 1.12084 0.90414 0.94560 1.25712 0.97134 0.99947 0.95238 1.70041 1.47561 1.42698 0.98496 0.85904 0.79379 0.79912 0.77564 1.19743 1.22880 1.16391 1.60020 1.48238 1.17128 1.04087 1.21520 0.91604 1.02514 0.88391 0.86527 1.22411 0.98020 0.98163 1.04335 1.21374 0.88265 0.75896 0.84394 1.90778 1.16351 1.42090 1.86202 1.43317 1.13807 1.69495 1.02174 1.19746 0.86388 0.91428 0.86639 1.68475 1.06315 1.17640 1.34784 1.23761 1.01239 0.88971 0.87266 1.23162 0.97520 1.05238 1.01037 1.23794 0.91987 0.87846 0.96025 1.67890 1.41107 1.21122 0.98194 0.94792 0.93835 0.92864 0.94573 0.92206 0.92630 0.84090 0.88767 0.91217 0.92609 0.72706 0.79610 0.79380 0.77064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 9.52 71.98 0.69 -4.44 16 2 C -0.12 -4.90 5.28 30.59 0.16 -4.73 16 3 C 0.20 8.74 1.69 44.17 0.07 8.81 16 4 H 0.01 0.58 6.26 -2.38 -0.01 0.57 16 5 C -0.51 -28.22 7.89 25.60 0.20 -28.02 16 6 H 0.04 2.27 7.84 -2.91 -0.02 2.25 16 7 C 0.02 0.98 5.45 84.65 0.46 1.44 16 8 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 9 Si 0.95 43.94 24.38 68.60 1.67 45.61 16 10 H -0.27 -12.29 6.86 99.48 0.68 -11.61 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.24 -10.00 6.53 99.48 0.65 -9.35 16 13 N -0.66 -26.74 4.82 -477.17 -2.30 -29.04 16 14 C 0.07 2.25 2.80 44.17 0.12 2.38 16 15 H 0.12 3.18 7.24 -2.38 -0.02 3.17 16 16 C -0.17 -4.20 9.04 71.98 0.65 -3.55 16 17 C 0.52 16.71 7.19 87.66 0.63 17.34 16 18 O -0.49 -20.28 14.63 -2.98 -0.04 -20.33 16 19 N -0.64 -16.42 5.29 -313.66 -1.66 -18.08 16 20 C 0.51 14.20 8.38 261.30 2.19 16.39 16 21 N -0.55 -16.73 7.87 -197.68 -1.56 -18.29 16 22 C 0.15 3.12 11.30 84.72 0.96 4.08 16 23 C -0.25 -3.08 10.17 22.45 0.23 -2.85 16 24 C 0.17 2.35 11.30 84.71 0.96 3.31 16 25 N -0.56 -12.24 10.46 -197.68 -2.07 -14.31 16 26 H 0.03 1.67 7.12 -2.38 -0.02 1.66 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 2.35 7.70 -2.39 -0.02 2.34 16 29 H 0.04 1.58 3.25 -2.39 -0.01 1.57 16 30 H 0.06 2.17 7.57 -2.39 -0.02 2.15 16 31 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 32 H 0.34 14.61 7.90 -89.69 -0.71 13.90 16 33 H 0.09 1.60 7.56 -2.39 -0.02 1.58 16 34 H 0.07 1.84 7.54 -2.39 -0.02 1.83 16 35 H 0.05 1.47 8.13 -2.38 -0.02 1.45 16 36 H 0.43 8.07 8.23 -92.71 -0.76 7.31 16 37 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -77.84 318.90 1.20 -76.64 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -0.47 Total: 26.16 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 7.32 Total: 10.15 kcal Atomic # 7 Polarization: -130.95 SS G_CDS: -7.28 Total: -138.23 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.04 Total: -20.33 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.67 Total: 45.61 kcal Total: -77.84 1.20 -76.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002544.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.839 kcal (2) G-P(sol) polarization free energy of solvation -77.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds