Wall clock time and date at job start Tue Mar 31 2020 00:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 H 1.09006 * 109.47050 * 305.64381 * 3 2 1 5 5 C 1.50698 * 109.46995 * 185.64353 * 3 2 1 6 6 H 1.08002 * 120.00134 * 239.99830 * 5 3 2 7 7 C 1.37870 * 120.00180 * 59.99974 * 5 3 2 8 8 N 1.31519 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00219 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47255 * 59.99969 * 9 7 5 11 11 H 1.48501 * 109.47246 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47168 * 300.00194 * 9 7 5 13 13 N 1.46901 * 109.47068 * 65.64269 * 3 2 1 14 14 C 1.46903 * 111.00097 * 204.30259 * 13 3 2 15 15 H 1.08998 * 109.46861 * 326.26093 * 14 13 3 16 16 C 1.52995 * 109.47064 * 86.26059 * 14 13 3 17 17 C 1.50702 * 109.47046 * 206.25992 * 14 13 3 18 18 O 1.21263 * 120.00119 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99966 * 179.97438 * 17 14 13 20 20 C 1.38932 * 120.00156 * 180.02562 * 19 17 14 21 21 N 1.32405 * 119.20122 * 359.72627 * 20 19 17 22 22 C 1.32277 * 120.74828 * 179.76489 * 21 20 19 23 23 C 1.38611 * 119.18593 * 0.50289 * 22 21 20 24 24 C 1.38616 * 118.53326 * 359.75199 * 23 22 21 25 25 N 1.32266 * 119.18535 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47077 * 293.71884 * 1 2 3 27 27 H 1.09005 * 109.47151 * 53.71405 * 1 2 3 28 28 H 1.08996 * 109.47520 * 173.71257 * 1 2 3 29 29 H 1.08996 * 109.46682 * 120.00122 * 2 1 3 30 30 H 1.08998 * 109.46850 * 239.99990 * 2 1 3 31 31 H 0.96993 * 120.00141 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00379 * 328.25603 * 13 3 2 33 33 H 1.08994 * 109.47346 * 64.80496 * 16 14 13 34 34 H 1.09002 * 109.46919 * 184.81001 * 16 14 13 35 35 H 1.09003 * 109.47085 * 304.80214 * 16 14 13 36 36 H 0.97000 * 119.99572 * 0.02562 * 19 17 14 37 37 H 1.08001 * 120.40751 * 180.23515 * 22 21 20 38 38 H 1.07994 * 120.73550 * 179.77721 * 23 22 21 39 39 H 1.08002 * 120.40624 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5406 1.4447 -0.1397 6 1 4.1541 1.8864 0.6316 7 6 4.1302 0.8829 -1.2522 8 7 3.3831 0.3455 -2.1918 9 14 5.9901 0.8863 -1.4257 10 1 6.5948 0.1481 -0.2879 11 1 6.3694 0.2276 -2.7014 12 1 6.4847 2.2865 -1.4261 13 7 1.6648 2.0945 1.2617 14 6 1.6003 3.5534 1.1016 15 1 2.3549 3.8737 0.3832 16 6 0.2124 3.9499 0.5943 17 6 1.8580 4.2164 2.4301 18 8 2.0735 3.5404 3.4135 19 7 1.8489 5.5608 2.5254 20 6 2.0869 6.1721 3.7500 21 7 2.3156 5.4187 4.8145 22 6 2.5504 5.9685 5.9945 23 6 2.5445 7.3498 6.1097 24 6 2.2965 8.1078 4.9760 25 7 2.0737 7.4939 3.8258 26 1 -0.3633 0.4134 0.9409 27 1 -0.3634 0.6082 -0.8284 28 1 -0.3634 -1.0214 -0.1125 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.7979 -0.0493 -2.9746 32 1 0.7911 1.7303 1.6112 33 1 -0.5339 3.7066 1.3504 34 1 0.1912 5.0212 0.3942 35 1 -0.0086 3.4045 -0.3232 36 1 1.6761 6.1015 1.7388 37 1 2.7399 5.3487 6.8584 38 1 2.7296 7.8250 7.0617 39 1 2.2852 9.1863 5.0312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584002545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:38 Heat of formation + Delta-G solvation = 33.835382 kcal Electronic energy + Delta-G solvation = -21597.377020 eV Core-core repulsion = 18348.092730 eV Total energy + Delta-G solvation = -3249.284289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22778 -39.30677 -36.50301 -34.78183 -33.71473 -33.23580 -31.60184 -30.79093 -28.64371 -26.13613 -25.04311 -24.60965 -23.22252 -22.35325 -20.08124 -19.66239 -18.49509 -17.31740 -16.28265 -16.03343 -15.94876 -15.54576 -14.95018 -14.81637 -14.36642 -14.14838 -13.63472 -13.52746 -13.46049 -12.86027 -12.60113 -12.18011 -11.88072 -11.74594 -11.20142 -11.17140 -11.01447 -10.90478 -10.84054 -10.72618 -10.64313 -9.96370 -9.92002 -9.65136 -9.44209 -9.10766 -8.86174 -8.66791 -8.35491 -7.26945 -5.97660 -4.01925 0.90183 1.08206 2.65481 2.99339 3.35031 3.38945 3.43938 3.90725 4.08313 4.42755 4.47150 4.58261 4.98173 5.08070 5.14584 5.16222 5.30915 5.43007 5.59431 5.66622 5.92458 6.01984 6.14089 6.17023 6.17598 6.33935 6.42621 6.51696 6.84173 7.00232 7.05747 7.12122 7.18696 7.45605 7.76650 7.91257 8.15665 8.25783 8.36512 8.52692 8.71409 9.06527 9.63487 11.07371 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.004417 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.087882 B = 6337.935939 C = 7053.701690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.663 5.663 14 C 0.083 3.917 15 H 0.114 0.886 16 C -0.178 4.178 17 C 0.509 3.491 18 O -0.442 6.442 19 N -0.646 5.646 20 C 0.543 3.457 21 N -0.503 5.503 22 C 0.177 3.823 23 C -0.276 4.276 24 C 0.177 3.823 25 N -0.557 5.557 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.260 0.740 32 H 0.326 0.674 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.420 0.580 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 13.612 10.484 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.024 0.976 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.294 5.294 14 C -0.032 4.032 15 H 0.132 0.868 16 C -0.237 4.237 17 C 0.294 3.706 18 O -0.306 6.306 19 N -0.297 5.297 20 C 0.188 3.812 21 N -0.223 5.223 22 C 0.009 3.991 23 C -0.300 4.300 24 C 0.009 3.991 25 N -0.278 5.278 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.257 0.743 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.002 12.378 10.268 16.842 hybrid contribution 0.314 0.905 -0.196 0.978 sum -4.688 13.284 10.072 17.317 Atomic orbital electron populations 1.21890 0.99556 0.99846 0.99494 1.21758 0.91262 1.00092 1.03283 1.19220 0.95519 0.90130 0.83626 0.97629 1.21199 0.91254 1.36897 1.04200 0.92092 1.24928 0.98062 0.95514 0.95806 1.69855 1.34770 1.39388 1.09538 0.86615 0.85817 0.78153 0.77134 1.20262 1.21438 1.20484 1.60299 1.36508 0.99326 1.33288 1.21337 0.97776 0.92417 0.91712 0.86827 1.22505 0.97140 1.01702 1.02388 1.21599 0.76585 0.79785 0.92632 1.90766 1.40427 1.61701 1.37698 1.43746 1.69637 1.08565 1.07777 1.19684 0.89362 0.84975 0.87163 1.68596 1.15760 1.39205 0.98711 1.23256 0.88370 0.92674 0.94773 1.22708 1.09222 0.96537 1.01543 1.22920 0.89000 1.00562 0.86578 1.67831 1.20825 1.09529 1.29619 0.94573 0.93874 0.94323 0.93830 0.88099 0.92997 0.85495 0.92547 0.92394 0.90785 0.74274 0.81416 0.83724 0.81413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.63 37.16 0.36 -2.49 16 2 C -0.13 -2.92 5.37 -26.73 -0.14 -3.06 16 3 C 0.22 5.34 1.83 -68.87 -0.13 5.21 16 4 H 0.01 0.15 7.19 -51.93 -0.37 -0.22 16 5 C -0.50 -13.57 8.46 -34.44 -0.29 -13.86 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 8 N -0.90 -24.94 11.29 55.43 0.63 -24.32 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.66 -14.14 5.53 -102.17 -0.57 -14.70 16 14 C 0.08 1.49 2.80 -68.86 -0.19 1.29 16 15 H 0.11 2.16 7.60 -51.93 -0.39 1.77 16 16 C -0.18 -2.53 9.02 37.15 0.33 -2.19 16 17 C 0.51 9.31 7.19 -10.98 -0.08 9.24 16 18 O -0.44 -9.74 14.63 5.57 0.08 -9.66 16 19 N -0.65 -9.81 5.31 -13.07 -0.07 -9.88 16 20 C 0.54 8.53 8.38 -322.27 -2.70 5.83 16 21 N -0.50 -8.31 7.87 -13.83 -0.11 -8.42 16 22 C 0.18 2.11 11.30 -17.22 -0.19 1.91 16 23 C -0.28 -2.47 10.17 -39.30 -0.40 -2.87 16 24 C 0.18 1.73 11.30 -17.23 -0.19 1.53 16 25 N -0.56 -7.38 10.46 -13.84 -0.14 -7.53 16 26 H 0.04 0.62 6.67 -51.93 -0.35 0.27 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.33 6.54 6.34 -39.29 -0.25 6.29 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 35 H 0.07 1.11 7.47 -51.93 -0.39 0.73 16 36 H 0.42 5.08 8.32 -40.82 -0.34 4.74 16 37 H 0.17 1.49 8.06 -52.49 -0.42 1.06 16 38 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -33.13 326.77 -9.31 -42.44 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.30 Total: 8.60 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -3.72 Total: 2.01 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.26 Total: -64.84 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.13 -9.31 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.272 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds