Wall clock time and date at job start Tue Mar 31 2020 00:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 H 1.09006 * 109.47050 * 305.64381 * 3 2 1 5 5 C 1.50698 * 109.46995 * 185.64353 * 3 2 1 6 6 H 1.08002 * 120.00134 * 239.99830 * 5 3 2 7 7 C 1.37870 * 120.00180 * 59.99974 * 5 3 2 8 8 N 1.31519 * 120.00235 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00219 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47255 * 59.99969 * 9 7 5 11 11 H 1.48501 * 109.47246 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47168 * 300.00194 * 9 7 5 13 13 N 1.46901 * 109.47068 * 65.64269 * 3 2 1 14 14 C 1.46903 * 111.00097 * 204.30259 * 13 3 2 15 15 H 1.08998 * 109.46861 * 326.26093 * 14 13 3 16 16 C 1.52995 * 109.47064 * 86.26059 * 14 13 3 17 17 C 1.50702 * 109.47046 * 206.25992 * 14 13 3 18 18 O 1.21263 * 120.00119 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99966 * 179.97438 * 17 14 13 20 20 C 1.38932 * 120.00156 * 180.02562 * 19 17 14 21 21 N 1.32405 * 119.20122 * 359.72627 * 20 19 17 22 22 C 1.32277 * 120.74828 * 179.76489 * 21 20 19 23 23 C 1.38611 * 119.18593 * 0.50289 * 22 21 20 24 24 C 1.38616 * 118.53326 * 359.75199 * 23 22 21 25 25 N 1.32266 * 119.18535 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47077 * 293.71884 * 1 2 3 27 27 H 1.09005 * 109.47151 * 53.71405 * 1 2 3 28 28 H 1.08996 * 109.47520 * 173.71257 * 1 2 3 29 29 H 1.08996 * 109.46682 * 120.00122 * 2 1 3 30 30 H 1.08998 * 109.46850 * 239.99990 * 2 1 3 31 31 H 0.96993 * 120.00141 * 179.97438 * 8 7 5 32 32 H 1.00898 * 111.00379 * 328.25603 * 13 3 2 33 33 H 1.08994 * 109.47346 * 64.80496 * 16 14 13 34 34 H 1.09002 * 109.46919 * 184.81001 * 16 14 13 35 35 H 1.09003 * 109.47085 * 304.80214 * 16 14 13 36 36 H 0.97000 * 119.99572 * 0.02562 * 19 17 14 37 37 H 1.08001 * 120.40751 * 180.23515 * 22 21 20 38 38 H 1.07994 * 120.73550 * 179.77721 * 23 22 21 39 39 H 1.08002 * 120.40624 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5406 1.4447 -0.1397 6 1 4.1541 1.8864 0.6316 7 6 4.1302 0.8829 -1.2522 8 7 3.3831 0.3455 -2.1918 9 14 5.9901 0.8863 -1.4257 10 1 6.5948 0.1481 -0.2879 11 1 6.3694 0.2276 -2.7014 12 1 6.4847 2.2865 -1.4261 13 7 1.6648 2.0945 1.2617 14 6 1.6003 3.5534 1.1016 15 1 2.3549 3.8737 0.3832 16 6 0.2124 3.9499 0.5943 17 6 1.8580 4.2164 2.4301 18 8 2.0735 3.5404 3.4135 19 7 1.8489 5.5608 2.5254 20 6 2.0869 6.1721 3.7500 21 7 2.3156 5.4187 4.8145 22 6 2.5504 5.9685 5.9945 23 6 2.5445 7.3498 6.1097 24 6 2.2965 8.1078 4.9760 25 7 2.0737 7.4939 3.8258 26 1 -0.3633 0.4134 0.9409 27 1 -0.3634 0.6082 -0.8284 28 1 -0.3634 -1.0214 -0.1125 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.7979 -0.0493 -2.9746 32 1 0.7911 1.7303 1.6112 33 1 -0.5339 3.7066 1.3504 34 1 0.1912 5.0212 0.3942 35 1 -0.0086 3.4045 -0.3232 36 1 1.6761 6.1015 1.7388 37 1 2.7399 5.3487 6.8584 38 1 2.7296 7.8250 7.0617 39 1 2.2852 9.1863 5.0312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584002545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:37 Heat of formation + Delta-G solvation = 11.589752 kcal Electronic energy + Delta-G solvation = -21598.341663 eV Core-core repulsion = 18348.092730 eV Total energy + Delta-G solvation = -3250.248932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.25150 -40.61646 -38.18351 -36.03211 -35.00229 -34.65098 -33.42598 -31.85307 -30.17247 -28.02186 -26.20256 -25.56319 -24.79492 -23.76003 -21.51228 -21.37526 -19.58011 -18.51892 -18.25520 -17.35802 -16.87785 -16.76182 -16.60533 -16.15046 -15.88800 -15.36853 -15.13604 -14.94820 -14.42143 -14.29809 -14.27897 -13.55024 -13.48504 -13.20261 -13.00790 -12.78420 -12.56555 -12.38108 -12.07476 -11.97295 -11.95136 -11.86618 -11.67496 -11.48892 -11.03536 -10.77893 -10.42662 -9.96237 -9.68806 -8.98326 -8.06499 -6.17866 -0.04360 0.23290 1.40303 1.42166 1.49696 1.52552 1.67102 2.43778 2.93543 3.15447 3.19151 3.40285 3.66641 3.83315 3.92415 4.12374 4.27439 4.31012 4.44113 4.53412 4.59796 4.71173 4.73230 4.84751 4.87947 5.07243 5.11967 5.19482 5.26680 5.37916 5.53469 5.59524 5.74721 5.89028 6.01643 6.15439 6.36185 6.48613 6.93294 6.94502 7.10695 7.32085 7.50909 8.95753 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.004417 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.087882 B = 6337.935939 C = 7053.701690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.232 3.768 4 H -0.010 1.010 5 C -0.516 4.516 6 H 0.039 0.961 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.948 3.052 10 H -0.281 1.281 11 H -0.279 1.279 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.082 3.918 15 H 0.098 0.902 16 C -0.166 4.166 17 C 0.517 3.483 18 O -0.489 6.489 19 N -0.637 5.637 20 C 0.514 3.486 21 N -0.552 5.552 22 C 0.153 3.847 23 C -0.246 4.246 24 C 0.169 3.831 25 N -0.563 5.563 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.262 0.738 32 H 0.333 0.667 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.432 0.568 37 H 0.189 0.811 38 H 0.191 0.809 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.083 15.854 11.630 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.124 3.876 4 H 0.008 0.992 5 C -0.555 4.555 6 H 0.057 0.943 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.775 3.225 10 H -0.207 1.207 11 H -0.204 1.204 12 H -0.201 1.201 13 N -0.308 5.308 14 C -0.032 4.032 15 H 0.116 0.884 16 C -0.225 4.225 17 C 0.302 3.698 18 O -0.356 6.356 19 N -0.289 5.289 20 C 0.158 3.842 21 N -0.273 5.273 22 C -0.012 4.012 23 C -0.269 4.269 24 C 0.003 3.997 25 N -0.285 5.285 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.271 0.729 37 H 0.206 0.794 38 H 0.208 0.792 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.459 14.684 11.434 19.395 hybrid contribution 0.484 0.360 -0.405 0.726 sum -4.975 15.044 11.030 19.306 Atomic orbital electron populations 1.21745 0.96012 1.01220 1.00593 1.21597 0.94454 0.98967 1.01037 1.18945 0.93696 0.90687 0.84237 0.99211 1.21406 0.93060 1.37112 1.03884 0.94251 1.25535 1.01697 0.95238 0.95581 1.69955 1.36020 1.39582 1.09720 0.85775 0.81477 0.78187 0.77107 1.20664 1.20437 1.20055 1.60110 1.37292 1.01448 1.31978 1.21329 0.99704 0.90534 0.91655 0.88367 1.22381 0.94488 1.03708 1.01918 1.21457 0.75801 0.80686 0.91868 1.90737 1.42906 1.63028 1.38966 1.43361 1.69294 1.07575 1.08706 1.19742 0.91475 0.85947 0.87007 1.68475 1.17270 1.41230 1.00350 1.23789 0.88646 0.94718 0.94091 1.23170 1.05496 0.95102 1.03157 1.23813 0.87553 1.02613 0.85717 1.67882 1.20943 1.08214 1.31440 0.92779 0.93581 0.92624 0.95275 0.90989 0.92913 0.84771 0.91715 0.89124 0.91493 0.72863 0.79424 0.79188 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.63 71.98 0.69 -4.43 16 2 C -0.12 -5.79 5.37 30.59 0.16 -5.62 16 3 C 0.23 11.48 1.83 44.17 0.08 11.57 16 4 H -0.01 -0.50 7.19 -2.38 -0.02 -0.52 16 5 C -0.52 -29.11 8.46 25.60 0.22 -28.90 16 6 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -51.67 11.29 21.45 0.24 -51.42 16 9 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.68 -29.60 5.53 -477.15 -2.64 -32.24 16 14 C 0.08 3.02 2.80 44.17 0.12 3.14 16 15 H 0.10 3.88 7.60 -2.39 -0.02 3.86 16 16 C -0.17 -4.57 9.02 71.98 0.65 -3.92 16 17 C 0.52 19.34 7.19 87.66 0.63 19.97 16 18 O -0.49 -22.31 14.63 -2.98 -0.04 -22.36 16 19 N -0.64 -19.43 5.31 -313.67 -1.66 -21.09 16 20 C 0.51 15.96 8.38 261.30 2.19 18.15 16 21 N -0.55 -18.30 7.87 -197.68 -1.56 -19.85 16 22 C 0.15 3.42 11.30 84.71 0.96 4.37 16 23 C -0.25 -3.52 10.17 22.45 0.23 -3.29 16 24 C 0.17 2.72 11.30 84.72 0.96 3.67 16 25 N -0.56 -13.94 10.46 -197.69 -2.07 -16.01 16 26 H 0.05 1.80 6.67 -2.39 -0.02 1.78 16 27 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 3.84 5.94 -2.39 -0.01 3.83 16 31 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 32 H 0.33 13.48 6.34 -89.70 -0.57 12.91 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.88 7.70 -2.39 -0.02 1.86 16 35 H 0.07 1.96 7.47 -2.39 -0.02 1.94 16 36 H 0.43 10.27 8.32 -92.71 -0.77 9.49 16 37 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -75.25 326.77 1.37 -73.87 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.26 Total: 26.04 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.34 Total: 16.18 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -7.69 Total: -140.62 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -75.25 1.37 -73.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.463 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds