Wall clock time and date at job start Tue Mar 31 2020 00:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47545 * 55.12318 * 3 2 1 5 5 C 1.50698 * 109.47342 * 175.12496 * 3 2 1 6 6 H 1.08000 * 119.99652 * 119.99532 * 5 3 2 7 7 C 1.37873 * 120.00218 * 299.99864 * 5 3 2 8 8 N 1.31519 * 119.99545 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00275 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46863 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46866 * 120.00080 * 9 7 5 12 12 H 1.48500 * 109.47161 * 239.99695 * 9 7 5 13 13 N 1.46906 * 109.46762 * 295.12408 * 3 2 1 14 14 C 1.46898 * 110.99952 * 156.23047 * 13 3 2 15 15 H 1.08997 * 109.47338 * 35.96218 * 14 13 3 16 16 C 1.53006 * 109.47254 * 275.96371 * 14 13 3 17 17 C 1.50701 * 109.47227 * 155.96437 * 14 13 3 18 18 O 1.21263 * 119.99923 * 359.97438 * 17 14 13 19 19 N 1.34780 * 119.99996 * 180.02562 * 17 14 13 20 20 C 1.38940 * 119.99675 * 180.02562 * 19 17 14 21 21 N 1.32398 * 119.20687 * 359.72524 * 20 19 17 22 22 C 1.32267 * 120.75286 * 179.76025 * 21 20 19 23 23 C 1.38619 * 119.18407 * 0.50559 * 22 21 20 24 24 C 1.38609 * 118.53288 * 359.75339 * 23 22 21 25 25 N 1.32272 * 119.18891 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47555 * 295.41831 * 1 2 3 27 27 H 1.09006 * 109.46989 * 175.41594 * 1 2 3 28 28 H 1.09002 * 109.46932 * 55.42516 * 1 2 3 29 29 H 1.09003 * 109.47247 * 119.99262 * 2 1 3 30 30 H 1.09001 * 109.47715 * 239.99743 * 2 1 3 31 31 H 0.96998 * 119.99773 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99864 * 280.18306 * 13 3 2 33 33 H 1.08999 * 109.46628 * 64.71910 * 16 14 13 34 34 H 1.09003 * 109.47064 * 184.71344 * 16 14 13 35 35 H 1.08992 * 109.46957 * 304.71742 * 16 14 13 36 36 H 0.96998 * 119.99976 * 359.97438 * 19 17 14 37 37 H 1.08000 * 120.41368 * 180.26329 * 22 21 20 38 38 H 1.08004 * 120.73433 * 179.76859 * 23 22 21 39 39 H 1.08001 * 120.40807 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9810 0.8430 5 6 3.5421 1.4443 0.1207 6 1 4.1457 1.8895 -0.6564 7 6 4.1458 0.8777 1.2232 8 7 3.4107 0.3352 2.1692 9 14 6.0078 0.8793 1.3725 10 1 6.5991 1.5454 0.1843 11 1 6.4052 1.6141 2.6002 12 1 6.4992 -0.5197 1.4522 13 7 1.6487 2.1001 -1.2540 14 6 1.5985 3.5591 -1.0900 15 1 2.3928 3.8763 -0.4143 16 6 0.2422 3.9604 -0.5066 17 6 1.7847 4.2220 -2.4305 18 8 1.9440 3.5458 -3.4244 19 7 1.7752 5.5665 -2.5245 20 6 1.9463 6.1776 -3.7605 21 7 2.1229 5.4242 -4.8348 22 6 2.2841 5.9737 -6.0271 23 6 2.2768 7.3551 -6.1414 24 6 2.0947 8.1133 -4.9954 25 7 1.9338 7.4996 -3.8347 26 1 -0.3634 0.4411 0.9281 27 1 -0.3633 -1.0244 -0.0821 28 1 -0.3633 0.5832 -0.8462 29 1 1.8934 -0.5137 0.8901 30 1 1.8935 -0.5139 -0.8899 31 1 3.8354 -0.0638 2.9447 32 1 2.2693 1.8420 -2.0066 33 1 0.1429 3.5493 0.4980 34 1 0.1727 5.0473 -0.4629 35 1 -0.5551 3.5704 -1.1392 36 1 1.6481 6.1074 -1.7294 37 1 2.4235 5.3538 -6.9004 38 1 2.4099 7.8302 -7.1021 39 1 2.0835 9.1919 -5.0495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584002546.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:40 Heat of formation + Delta-G solvation = 29.101256 kcal Electronic energy + Delta-G solvation = -21601.025573 eV Core-core repulsion = 18351.535997 eV Total energy + Delta-G solvation = -3249.489576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30906 -39.46554 -36.26853 -34.93090 -33.77570 -33.15822 -31.52275 -30.83270 -28.87293 -26.03141 -25.05163 -24.62201 -23.20983 -22.19342 -20.05118 -19.42897 -18.56829 -17.41572 -16.72915 -16.04687 -16.02784 -15.66502 -15.01847 -14.72383 -14.49987 -14.23880 -13.68582 -13.56661 -13.20737 -12.77212 -12.20163 -12.12086 -11.61238 -11.52284 -11.26142 -11.13985 -11.09934 -10.97320 -10.91027 -10.78976 -10.65176 -10.17204 -9.73170 -9.58439 -9.48302 -9.08229 -8.95008 -8.75781 -8.39207 -7.35898 -6.02377 -4.15619 0.83373 1.02764 2.57534 2.83267 3.24745 3.33744 3.37975 3.83962 4.02399 4.37347 4.40300 4.52760 4.93253 5.02885 5.10096 5.15101 5.25644 5.59246 5.61997 5.81652 5.94222 6.05119 6.32832 6.41590 6.43886 6.53619 6.60175 6.73233 6.93471 7.04934 7.11628 7.20509 7.41822 7.57383 7.76282 8.04812 8.10392 8.12213 8.27859 8.34502 8.62557 8.96944 9.52634 10.97443 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.004376 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.187026 B = 6397.694520 C = 7078.656923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.671 5.671 14 C 0.079 3.921 15 H 0.079 0.921 16 C -0.134 4.134 17 C 0.510 3.490 18 O -0.457 6.457 19 N -0.643 5.643 20 C 0.542 3.458 21 N -0.503 5.503 22 C 0.177 3.823 23 C -0.274 4.274 24 C 0.177 3.823 25 N -0.555 5.555 26 H 0.035 0.965 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.344 0.656 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.422 0.578 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 14.028 -10.957 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.304 5.304 14 C -0.035 4.035 15 H 0.097 0.903 16 C -0.192 4.192 17 C 0.295 3.705 18 O -0.323 6.323 19 N -0.293 5.293 20 C 0.187 3.813 21 N -0.223 5.223 22 C 0.009 3.991 23 C -0.298 4.298 24 C 0.010 3.990 25 N -0.276 5.276 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.260 0.740 37 H 0.187 0.813 38 H 0.164 0.836 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.077 12.748 -10.393 17.213 hybrid contribution 2.167 0.992 -0.250 2.397 sum -2.909 13.740 -10.644 17.622 Atomic orbital electron populations 1.21723 0.98927 0.98602 1.00378 1.21477 0.92194 0.98906 1.01815 1.19241 0.92783 0.91454 0.85814 0.94558 1.21924 0.92776 1.38494 1.05596 0.92840 1.24908 0.97910 0.94862 0.95640 1.69884 1.34748 1.38062 1.09437 0.86615 0.86105 0.77849 0.77901 1.19962 1.21017 1.20870 1.60992 1.57687 1.01469 1.10302 1.21371 0.99178 0.92506 0.90486 0.90306 1.21773 0.95877 0.99197 1.02349 1.21607 0.75602 0.80229 0.93028 1.90769 1.42002 1.61813 1.37716 1.43595 1.70649 1.08402 1.06703 1.19646 0.89602 0.85041 0.87031 1.68561 1.16079 1.39260 0.98375 1.23256 0.88247 0.92705 0.94857 1.22728 1.09094 0.96521 1.01431 1.22937 0.88983 1.00621 0.86488 1.67833 1.20406 1.09452 1.29893 0.94539 0.95635 0.93016 0.89040 0.94982 0.92890 0.83640 0.90899 0.93318 0.91860 0.73962 0.81345 0.83629 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.51 5.45 -26.73 -0.15 -2.66 16 3 C 0.21 5.17 1.80 -68.86 -0.12 5.05 16 4 H 0.04 0.93 7.09 -51.93 -0.37 0.57 16 5 C -0.55 -14.61 8.20 -34.44 -0.28 -14.90 16 6 H 0.05 1.45 7.76 -52.49 -0.41 1.05 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.80 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 N -0.67 -14.27 5.29 -102.16 -0.54 -14.81 16 14 C 0.08 1.42 2.84 -68.86 -0.20 1.22 16 15 H 0.08 1.50 7.60 -51.93 -0.39 1.10 16 16 C -0.13 -2.02 9.30 37.16 0.35 -1.68 16 17 C 0.51 9.08 7.14 -10.98 -0.08 9.00 16 18 O -0.46 -9.61 13.86 5.57 0.08 -9.54 16 19 N -0.64 -9.57 5.27 -13.07 -0.07 -9.64 16 20 C 0.54 8.30 8.38 -322.25 -2.70 5.60 16 21 N -0.50 -8.06 7.87 -13.83 -0.11 -8.17 16 22 C 0.18 2.03 11.30 -17.22 -0.19 1.83 16 23 C -0.27 -2.35 10.17 -39.30 -0.40 -2.75 16 24 C 0.18 1.67 11.30 -17.23 -0.19 1.48 16 25 N -0.55 -7.18 10.46 -13.83 -0.14 -7.33 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.03 7.63 -51.93 -0.40 0.64 16 29 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.34 7.88 7.20 -39.29 -0.28 7.60 16 33 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 34 H 0.05 0.57 7.44 -51.93 -0.39 0.19 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.42 5.05 8.18 -40.82 -0.33 4.71 16 37 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 39 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -31.90 327.22 -9.30 -41.20 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.36 Total: 9.60 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -3.70 Total: 1.51 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.24 Total: -63.75 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.90 -9.30 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002546.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.306 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds