Wall clock time and date at job start Tue Mar 31 2020 00:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46959 * 2 1 4 4 H 1.08997 * 109.47545 * 55.12318 * 3 2 1 5 5 C 1.50698 * 109.47342 * 175.12496 * 3 2 1 6 6 H 1.08000 * 119.99652 * 119.99532 * 5 3 2 7 7 C 1.37873 * 120.00218 * 299.99864 * 5 3 2 8 8 N 1.31519 * 119.99545 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00275 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46863 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46866 * 120.00080 * 9 7 5 12 12 H 1.48500 * 109.47161 * 239.99695 * 9 7 5 13 13 N 1.46906 * 109.46762 * 295.12408 * 3 2 1 14 14 C 1.46898 * 110.99952 * 156.23047 * 13 3 2 15 15 H 1.08997 * 109.47338 * 35.96218 * 14 13 3 16 16 C 1.53006 * 109.47254 * 275.96371 * 14 13 3 17 17 C 1.50701 * 109.47227 * 155.96437 * 14 13 3 18 18 O 1.21263 * 119.99923 * 359.97438 * 17 14 13 19 19 N 1.34780 * 119.99996 * 180.02562 * 17 14 13 20 20 C 1.38940 * 119.99675 * 180.02562 * 19 17 14 21 21 N 1.32398 * 119.20687 * 359.72524 * 20 19 17 22 22 C 1.32267 * 120.75286 * 179.76025 * 21 20 19 23 23 C 1.38619 * 119.18407 * 0.50559 * 22 21 20 24 24 C 1.38609 * 118.53288 * 359.75339 * 23 22 21 25 25 N 1.32272 * 119.18891 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47555 * 295.41831 * 1 2 3 27 27 H 1.09006 * 109.46989 * 175.41594 * 1 2 3 28 28 H 1.09002 * 109.46932 * 55.42516 * 1 2 3 29 29 H 1.09003 * 109.47247 * 119.99262 * 2 1 3 30 30 H 1.09001 * 109.47715 * 239.99743 * 2 1 3 31 31 H 0.96998 * 119.99773 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99864 * 280.18306 * 13 3 2 33 33 H 1.08999 * 109.46628 * 64.71910 * 16 14 13 34 34 H 1.09003 * 109.47064 * 184.71344 * 16 14 13 35 35 H 1.08992 * 109.46957 * 304.71742 * 16 14 13 36 36 H 0.96998 * 119.99976 * 359.97438 * 19 17 14 37 37 H 1.08000 * 120.41368 * 180.26329 * 22 21 20 38 38 H 1.08004 * 120.73433 * 179.76859 * 23 22 21 39 39 H 1.08001 * 120.40807 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9810 0.8430 5 6 3.5421 1.4443 0.1207 6 1 4.1457 1.8895 -0.6564 7 6 4.1458 0.8777 1.2232 8 7 3.4107 0.3352 2.1692 9 14 6.0078 0.8793 1.3725 10 1 6.5991 1.5454 0.1843 11 1 6.4052 1.6141 2.6002 12 1 6.4992 -0.5197 1.4522 13 7 1.6487 2.1001 -1.2540 14 6 1.5985 3.5591 -1.0900 15 1 2.3928 3.8763 -0.4143 16 6 0.2422 3.9604 -0.5066 17 6 1.7847 4.2220 -2.4305 18 8 1.9440 3.5458 -3.4244 19 7 1.7752 5.5665 -2.5245 20 6 1.9463 6.1776 -3.7605 21 7 2.1229 5.4242 -4.8348 22 6 2.2841 5.9737 -6.0271 23 6 2.2768 7.3551 -6.1414 24 6 2.0947 8.1133 -4.9954 25 7 1.9338 7.4996 -3.8347 26 1 -0.3634 0.4411 0.9281 27 1 -0.3633 -1.0244 -0.0821 28 1 -0.3633 0.5832 -0.8462 29 1 1.8934 -0.5137 0.8901 30 1 1.8935 -0.5139 -0.8899 31 1 3.8354 -0.0638 2.9447 32 1 2.2693 1.8420 -2.0066 33 1 0.1429 3.5493 0.4980 34 1 0.1727 5.0473 -0.4629 35 1 -0.5551 3.5704 -1.1392 36 1 1.6481 6.1074 -1.7294 37 1 2.4235 5.3538 -6.9004 38 1 2.4099 7.8302 -7.1021 39 1 2.0835 9.1919 -5.0495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584002546.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:39 Heat of formation + Delta-G solvation = 8.364365 kcal Electronic energy + Delta-G solvation = -21601.924792 eV Core-core repulsion = 18351.535997 eV Total energy + Delta-G solvation = -3250.388795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31383 -40.74225 -37.98497 -36.15700 -34.93253 -34.67320 -33.34442 -31.91932 -30.41863 -27.90381 -26.19746 -25.58083 -24.79645 -23.61102 -21.48158 -21.15296 -19.65470 -18.79973 -18.42003 -17.36243 -16.96872 -16.83309 -16.65732 -16.24918 -15.72940 -15.37062 -15.30843 -14.84760 -14.47539 -14.32045 -13.87654 -13.55886 -13.21133 -13.12536 -12.98738 -12.90404 -12.51096 -12.44235 -12.09707 -12.07944 -12.02685 -11.89735 -11.50536 -11.46730 -11.05408 -10.82721 -10.45168 -10.00183 -9.74189 -9.15464 -8.07042 -6.28507 -0.08469 0.21037 1.34895 1.38809 1.46486 1.48321 1.53398 2.39026 2.90565 3.11375 3.14718 3.37664 3.59635 3.81643 3.87468 4.21951 4.28839 4.39006 4.42648 4.63972 4.76932 4.80607 4.84690 4.96948 4.98240 5.05620 5.18835 5.31291 5.45713 5.50076 5.52101 5.62769 5.76843 5.93079 6.09284 6.11609 6.17509 6.35273 6.71575 6.93708 6.98081 7.25423 7.42647 8.89554 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020841 B = 0.004376 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.187026 B = 6397.694520 C = 7078.656923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.224 3.776 4 H 0.020 0.980 5 C -0.563 4.563 6 H 0.040 0.960 7 C 0.028 3.972 8 N -0.904 5.904 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.279 1.279 13 N -0.667 5.667 14 C 0.077 3.923 15 H 0.068 0.932 16 C -0.125 4.125 17 C 0.517 3.483 18 O -0.497 6.497 19 N -0.634 5.634 20 C 0.513 3.487 21 N -0.551 5.551 22 C 0.154 3.846 23 C -0.244 4.244 24 C 0.169 3.831 25 N -0.562 5.562 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.332 0.668 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.433 0.567 37 H 0.190 0.810 38 H 0.192 0.808 39 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 16.289 -12.179 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.038 0.962 5 C -0.602 4.602 6 H 0.058 0.942 7 C -0.173 4.173 8 N -0.543 5.543 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.205 1.205 13 N -0.299 5.299 14 C -0.036 4.036 15 H 0.086 0.914 16 C -0.183 4.183 17 C 0.303 3.697 18 O -0.366 6.366 19 N -0.286 5.286 20 C 0.157 3.843 21 N -0.272 5.272 22 C -0.012 4.012 23 C -0.267 4.267 24 C 0.003 3.997 25 N -0.283 5.283 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.274 0.726 37 H 0.207 0.793 38 H 0.209 0.791 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.200 15.068 -11.633 19.734 hybrid contribution 2.217 0.438 -0.009 2.260 sum -2.983 15.507 -11.641 19.618 Atomic orbital electron populations 1.21571 0.96190 0.99921 1.00641 1.21363 0.94627 0.98283 0.99905 1.19010 0.91350 0.91689 0.86355 0.96233 1.22152 0.94208 1.38504 1.05377 0.94156 1.25544 1.01661 0.94642 0.95442 1.69983 1.36134 1.38417 1.09745 0.85713 0.81555 0.77816 0.77739 1.20375 1.20182 1.20520 1.60946 1.56746 1.03644 1.08534 1.21435 1.00573 0.90658 0.90979 0.91419 1.21721 0.93724 1.01563 1.01266 1.21342 0.75107 0.81156 0.92095 1.90744 1.44189 1.62977 1.38660 1.43226 1.70264 1.07390 1.07679 1.19696 0.91795 0.86001 0.86815 1.68445 1.17544 1.41220 0.99981 1.23800 0.88496 0.94725 0.94169 1.23192 1.05262 0.95119 1.03124 1.23823 0.87557 1.02653 0.85657 1.67881 1.20519 1.08171 1.31758 0.94325 0.93807 0.92560 0.91637 0.96045 0.92719 0.84955 0.91790 0.89670 0.92067 0.72641 0.79283 0.79112 0.76945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.85 71.98 0.71 -4.41 16 2 C -0.10 -5.02 5.45 30.60 0.17 -4.86 16 3 C 0.22 11.11 1.80 44.17 0.08 11.19 16 4 H 0.02 1.04 7.09 -2.39 -0.02 1.02 16 5 C -0.56 -30.82 8.20 25.60 0.21 -30.61 16 6 H 0.04 2.26 7.76 -2.91 -0.02 2.24 16 7 C 0.03 1.52 5.29 84.65 0.45 1.97 16 8 N -0.90 -50.72 11.29 21.45 0.24 -50.48 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 13 N -0.67 -29.21 5.29 -477.14 -2.52 -31.73 16 14 C 0.08 2.85 2.84 44.17 0.13 2.98 16 15 H 0.07 2.66 7.60 -2.39 -0.02 2.64 16 16 C -0.12 -3.71 9.30 71.98 0.67 -3.04 16 17 C 0.52 18.84 7.14 87.66 0.63 19.47 16 18 O -0.50 -21.63 13.86 -2.98 -0.04 -21.67 16 19 N -0.63 -18.90 5.27 -313.66 -1.65 -20.55 16 20 C 0.51 15.48 8.38 261.29 2.19 17.66 16 21 N -0.55 -17.62 7.87 -197.68 -1.56 -19.18 16 22 C 0.15 3.27 11.30 84.72 0.96 4.23 16 23 C -0.24 -3.29 10.17 22.45 0.23 -3.06 16 24 C 0.17 2.60 11.30 84.72 0.96 3.55 16 25 N -0.56 -13.53 10.46 -197.68 -2.07 -15.59 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 2.22 7.63 -2.39 -0.02 2.20 16 29 H 0.07 3.54 5.95 -2.39 -0.01 3.53 16 30 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.33 15.88 7.20 -89.69 -0.65 15.23 16 33 H 0.06 2.02 7.41 -2.39 -0.02 2.01 16 34 H 0.08 1.88 7.44 -2.39 -0.02 1.86 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.43 10.15 8.18 -92.71 -0.76 9.39 16 37 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -71.56 327.22 1.47 -70.09 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.33 Total: 28.25 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 7.37 Total: 15.09 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -7.56 Total: -137.54 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.04 Total: -21.67 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -71.56 1.47 -70.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584002546.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.458 kcal (2) G-P(sol) polarization free energy of solvation -71.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds