Wall clock time and date at job start Tue Mar 31 2020 01:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00054 * 2 1 4 4 N 1.46500 * 109.47631 * 124.99973 * 3 2 1 5 5 C 1.46497 * 119.99536 * 274.91508 * 4 3 2 6 6 C 1.50707 * 109.46709 * 263.38550 * 5 4 3 7 7 H 1.07995 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99845 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00087 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00228 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47253 * 89.99700 * 10 8 6 12 12 H 1.48504 * 109.46935 * 209.99627 * 10 8 6 13 13 H 1.48494 * 109.47068 * 329.99609 * 10 8 6 14 14 C 1.34772 * 120.00028 * 94.90519 * 4 3 2 15 15 O 1.21599 * 119.99932 * 4.16514 * 14 4 3 16 16 C 1.47522 * 119.99949 * 184.16109 * 14 4 3 17 17 C 1.36599 * 125.77353 * 174.02892 * 16 14 4 18 18 N 1.34808 * 106.83948 * 180.18383 * 17 16 14 19 19 C 1.46499 * 126.59175 * 179.85359 * 18 17 16 20 20 C 1.53000 * 109.47579 * 124.70834 * 19 18 17 21 21 C 1.52991 * 109.47470 * 179.97438 * 20 19 18 22 22 N 1.40205 * 106.81074 * 359.58743 * 18 17 16 23 23 N 1.28755 * 108.36909 * 0.26555 * 22 18 17 24 24 H 1.08010 * 119.99716 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00070 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99617 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47215 * 4.99532 * 3 2 1 28 28 H 1.09002 * 109.46831 * 245.00082 * 3 2 1 29 29 H 1.08991 * 109.47790 * 23.38671 * 5 4 3 30 30 H 1.08996 * 109.47353 * 143.39584 * 5 4 3 31 31 H 0.96997 * 120.00098 * 179.97438 * 9 8 6 32 32 H 1.07998 * 126.57425 * 0.03320 * 17 16 14 33 33 H 1.09005 * 109.47542 * 4.70493 * 19 18 17 34 34 H 1.09007 * 109.47029 * 244.71261 * 19 18 17 35 35 H 1.09010 * 109.46555 * 59.99495 * 20 19 18 36 36 H 1.08999 * 109.47132 * 300.00538 * 20 19 18 37 37 H 1.09000 * 109.47278 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.47150 * 299.99963 * 21 20 19 39 39 H 1.08996 * 109.47438 * 60.00096 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5289 1.7640 2.4517 6 6 2.8637 3.2199 2.6505 7 1 3.3715 3.7685 1.8711 8 6 2.5207 3.8518 3.8269 9 7 2.8124 5.1224 4.0002 10 14 1.6416 2.9031 5.1748 11 1 2.6438 2.2927 6.0849 12 1 0.7723 3.8285 5.9451 13 1 0.8099 1.8341 4.5660 14 6 4.2772 0.9591 0.9576 15 8 4.6821 0.6730 -0.1528 16 6 5.1907 0.8981 2.1143 17 6 6.4736 0.4292 2.0948 18 7 6.9507 0.5447 3.3504 19 6 8.2869 0.1644 3.8152 20 6 8.9552 1.3666 4.4852 21 6 10.3504 0.9692 4.9713 22 7 5.9243 1.1044 4.1243 23 7 4.9033 1.2993 3.3644 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.4498 1.6268 2.5199 30 1 3.0201 1.1699 3.2223 31 1 2.5708 5.5670 4.8277 32 1 7.0030 0.0384 1.2384 33 1 8.8887 -0.1593 2.9660 34 1 8.2032 -0.6516 4.5331 35 1 8.3533 1.6902 5.3346 36 1 9.0388 2.1826 3.7674 37 1 10.8263 1.8256 5.4490 38 1 10.2663 0.1534 5.6894 39 1 10.9524 0.6454 4.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590039619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:04 Heat of formation + Delta-G solvation = 93.556775 kcal Electronic energy + Delta-G solvation = -21822.711706 eV Core-core repulsion = 18576.017131 eV Total energy + Delta-G solvation = -3246.694575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.68471 -38.86913 -35.88186 -35.55097 -33.40963 -32.37501 -31.97280 -30.31732 -28.03493 -27.08684 -25.65014 -23.04986 -22.56165 -21.87293 -21.18152 -19.83574 -18.78340 -17.02154 -16.80671 -16.01655 -15.78343 -15.62942 -15.03850 -14.57937 -14.33954 -14.15168 -13.88948 -13.59392 -12.94227 -12.90840 -12.63744 -12.27135 -12.17569 -12.05136 -11.77196 -11.47280 -11.43645 -11.07910 -10.97976 -10.76644 -10.62917 -10.09998 -9.97203 -9.87799 -9.52128 -9.34352 -9.01495 -8.76696 -8.42261 -7.69549 -5.96350 -3.92773 1.58252 2.38364 2.42533 2.53186 3.40773 3.45486 3.49531 3.89458 3.99142 4.35895 4.53572 4.58765 4.73218 4.88660 5.05505 5.11742 5.19224 5.31565 5.37767 5.39307 5.43118 5.50895 5.69376 5.76003 5.85987 5.92499 6.03725 6.12743 6.27253 6.33236 6.62560 6.74975 6.87292 7.00102 7.14394 7.48822 7.72068 8.17015 8.52051 8.64283 8.90574 9.07019 9.65946 11.17222 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.006606 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.096970 B = 4237.658121 C = 5729.343440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.140 3.860 4 N -0.572 5.572 5 C 0.200 3.800 6 C -0.512 4.512 7 H 0.071 0.929 8 C 0.082 3.918 9 N -0.901 5.901 10 Si 0.870 3.130 11 H -0.270 1.270 12 H -0.290 1.290 13 H -0.267 1.267 14 C 0.604 3.396 15 O -0.572 6.572 16 C -0.087 4.087 17 C 0.076 3.924 18 N -0.373 5.373 19 C 0.126 3.874 20 C -0.140 4.140 21 C -0.148 4.148 22 N -0.081 5.081 23 N -0.148 5.148 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.262 0.738 32 H 0.196 0.804 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -12.105 -1.600 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.176 4.176 3 C 0.018 3.982 4 N -0.300 5.300 5 C 0.079 3.921 6 C -0.551 4.551 7 H 0.089 0.911 8 C -0.120 4.120 9 N -0.540 5.540 10 Si 0.697 3.303 11 H -0.195 1.195 12 H -0.216 1.216 13 H -0.192 1.192 14 C 0.391 3.609 15 O -0.453 6.453 16 C -0.226 4.226 17 C -0.081 4.081 18 N -0.158 5.158 19 C 0.004 3.996 20 C -0.178 4.178 21 C -0.206 4.206 22 N -0.061 5.061 23 N -0.021 5.021 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.213 0.787 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.910 -11.626 -0.609 14.661 hybrid contribution -0.019 -0.604 -0.027 0.605 sum 8.891 -12.231 -0.636 15.134 Atomic orbital electron populations 1.23796 0.95773 1.01669 1.01678 1.23387 0.96125 0.99215 0.98891 1.20517 0.92265 0.94856 0.90588 1.47772 1.07985 1.62129 1.12084 1.20253 0.95241 0.97268 0.79372 1.21150 1.38467 0.92723 1.02724 0.91104 1.24698 0.95240 0.94478 0.97584 1.69900 1.47679 1.10150 1.26268 0.86937 0.80115 0.80128 0.83081 1.19485 1.21605 1.19185 1.16787 0.81516 0.76834 0.85796 1.90691 1.76719 1.53438 1.24433 1.21396 0.95174 1.11783 0.94241 1.23172 0.95297 1.00333 0.89276 1.50587 1.13709 1.44040 1.07429 1.21972 0.77936 0.98746 1.00928 1.21835 0.96828 0.97156 1.02012 1.21693 0.95548 1.02039 1.01291 1.82096 0.90735 1.16840 1.16415 1.75193 1.16783 1.08921 1.01189 0.88832 0.88307 0.87756 0.89634 0.89306 0.95375 0.92168 0.92824 0.78693 0.88361 0.88931 0.89895 0.90964 0.91826 0.92299 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 29.01 0.42 -2.26 16 2 C -0.16 -2.52 9.84 -36.03 -0.35 -2.87 16 3 C 0.14 2.62 5.90 -5.20 -0.03 2.58 16 4 N -0.57 -12.56 2.46 -177.67 -0.44 -12.99 16 5 C 0.20 4.86 3.85 -5.19 -0.02 4.84 16 6 C -0.51 -14.49 8.93 -34.44 -0.31 -14.80 16 7 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 8 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 9 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 10 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 13 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 14 C 0.60 13.18 7.61 -12.48 -0.09 13.08 16 15 O -0.57 -12.62 16.36 5.28 0.09 -12.53 16 16 C -0.09 -1.80 6.68 -83.55 -0.56 -2.36 16 17 C 0.08 1.20 11.28 -16.84 -0.19 1.01 16 18 N -0.37 -5.64 3.69 -61.06 -0.23 -5.86 16 19 C 0.13 1.21 6.54 -4.04 -0.03 1.18 16 20 C -0.14 -1.38 6.14 -26.74 -0.16 -1.54 16 21 C -0.15 -1.02 9.91 37.15 0.37 -0.65 16 22 N -0.08 -1.63 13.65 60.35 0.82 -0.81 16 23 N -0.15 -3.37 8.08 32.85 0.27 -3.10 16 24 H 0.09 1.12 8.06 -52.48 -0.42 0.70 16 25 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 26 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 27 H 0.09 1.57 7.76 -51.93 -0.40 1.17 16 28 H 0.09 1.63 7.23 -51.93 -0.38 1.26 16 29 H 0.03 0.68 7.08 -51.93 -0.37 0.31 16 30 H 0.06 1.51 4.72 -51.93 -0.25 1.26 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.20 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.10 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -34.66 334.99 -5.01 -39.67 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.62 Total: -0.11 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.06 Total: 0.50 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.20 Total: -49.89 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.66 -5.01 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590039619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.230 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds