Wall clock time and date at job start Tue Mar 31 2020 01:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00054 * 2 1 4 4 N 1.46500 * 109.47631 * 124.99973 * 3 2 1 5 5 C 1.46497 * 119.99536 * 274.91508 * 4 3 2 6 6 C 1.50707 * 109.46709 * 263.38550 * 5 4 3 7 7 H 1.07995 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99845 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00087 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00228 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47253 * 89.99700 * 10 8 6 12 12 H 1.48504 * 109.46935 * 209.99627 * 10 8 6 13 13 H 1.48494 * 109.47068 * 329.99609 * 10 8 6 14 14 C 1.34772 * 120.00028 * 94.90519 * 4 3 2 15 15 O 1.21599 * 119.99932 * 4.16514 * 14 4 3 16 16 C 1.47522 * 119.99949 * 184.16109 * 14 4 3 17 17 C 1.36599 * 125.77353 * 174.02892 * 16 14 4 18 18 N 1.34808 * 106.83948 * 180.18383 * 17 16 14 19 19 C 1.46499 * 126.59175 * 179.85359 * 18 17 16 20 20 C 1.53000 * 109.47579 * 124.70834 * 19 18 17 21 21 C 1.52991 * 109.47470 * 179.97438 * 20 19 18 22 22 N 1.40205 * 106.81074 * 359.58743 * 18 17 16 23 23 N 1.28755 * 108.36909 * 0.26555 * 22 18 17 24 24 H 1.08010 * 119.99716 * 180.02562 * 1 2 3 25 25 H 1.07999 * 120.00070 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99617 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47215 * 4.99532 * 3 2 1 28 28 H 1.09002 * 109.46831 * 245.00082 * 3 2 1 29 29 H 1.08991 * 109.47790 * 23.38671 * 5 4 3 30 30 H 1.08996 * 109.47353 * 143.39584 * 5 4 3 31 31 H 0.96997 * 120.00098 * 179.97438 * 9 8 6 32 32 H 1.07998 * 126.57425 * 0.03320 * 17 16 14 33 33 H 1.09005 * 109.47542 * 4.70493 * 19 18 17 34 34 H 1.09007 * 109.47029 * 244.71261 * 19 18 17 35 35 H 1.09010 * 109.46555 * 59.99495 * 20 19 18 36 36 H 1.08999 * 109.47132 * 300.00538 * 20 19 18 37 37 H 1.09000 * 109.47278 * 180.02562 * 21 20 19 38 38 H 1.09006 * 109.47150 * 299.99963 * 21 20 19 39 39 H 1.08996 * 109.47438 * 60.00096 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5289 1.7640 2.4517 6 6 2.8637 3.2199 2.6505 7 1 3.3715 3.7685 1.8711 8 6 2.5207 3.8518 3.8269 9 7 2.8124 5.1224 4.0002 10 14 1.6416 2.9031 5.1748 11 1 2.6438 2.2927 6.0849 12 1 0.7723 3.8285 5.9451 13 1 0.8099 1.8341 4.5660 14 6 4.2772 0.9591 0.9576 15 8 4.6821 0.6730 -0.1528 16 6 5.1907 0.8981 2.1143 17 6 6.4736 0.4292 2.0948 18 7 6.9507 0.5447 3.3504 19 6 8.2869 0.1644 3.8152 20 6 8.9552 1.3666 4.4852 21 6 10.3504 0.9692 4.9713 22 7 5.9243 1.1044 4.1243 23 7 4.9033 1.2993 3.3644 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3586 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.4498 1.6268 2.5199 30 1 3.0201 1.1699 3.2223 31 1 2.5708 5.5670 4.8277 32 1 7.0030 0.0384 1.2384 33 1 8.8887 -0.1593 2.9660 34 1 8.2032 -0.6516 4.5331 35 1 8.3533 1.6902 5.3346 36 1 9.0388 2.1826 3.7674 37 1 10.8263 1.8256 5.4490 38 1 10.2663 0.1534 5.6894 39 1 10.9524 0.6454 4.1223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590039619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:04 Heat of formation + Delta-G solvation = 69.926280 kcal Electronic energy + Delta-G solvation = -21823.736402 eV Core-core repulsion = 18576.017131 eV Total energy + Delta-G solvation = -3247.719270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.08998 -40.49797 -37.20672 -36.84140 -35.04401 -33.98685 -33.41289 -31.71367 -29.96294 -28.14548 -27.03218 -24.81505 -23.81524 -23.37565 -22.29390 -21.12614 -20.20710 -19.02039 -18.42627 -17.40414 -17.24486 -17.00849 -16.21833 -16.06656 -15.83873 -15.55175 -15.44718 -14.78426 -14.48283 -14.21296 -14.14347 -13.80197 -13.54847 -13.13086 -12.96218 -12.90432 -12.68694 -12.57889 -12.34178 -12.26677 -11.93508 -11.82785 -11.69474 -11.45896 -11.14067 -11.08425 -10.65614 -10.28881 -10.20502 -9.43974 -8.21776 -6.22061 0.27764 0.83696 1.23856 1.34023 1.38310 1.44896 1.48665 2.31028 2.41225 2.43576 3.17046 3.35074 3.46133 3.78539 3.85592 4.05505 4.09807 4.17779 4.21712 4.28509 4.44661 4.49768 4.61201 4.71905 4.80365 4.81403 4.86690 5.04382 5.11991 5.16731 5.26244 5.34170 5.55529 5.62686 5.66769 5.69602 5.91191 6.23078 6.54377 6.75161 7.05518 7.29500 7.41387 8.95720 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.006606 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.096970 B = 4237.658121 C = 5729.343440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C 0.137 3.863 4 N -0.582 5.582 5 C 0.215 3.785 6 C -0.502 4.502 7 H 0.021 0.979 8 C 0.028 3.972 9 N -0.950 5.950 10 Si 0.932 3.068 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.242 1.242 14 C 0.599 3.401 15 O -0.581 6.581 16 C -0.129 4.129 17 C 0.106 3.894 18 N -0.353 5.353 19 C 0.114 3.886 20 C -0.138 4.138 21 C -0.140 4.140 22 N -0.113 5.113 23 N -0.194 5.194 24 H 0.121 0.879 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.263 0.737 32 H 0.241 0.759 33 H 0.144 0.856 34 H 0.115 0.885 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -14.950 -1.565 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.016 3.984 4 N -0.309 5.309 5 C 0.092 3.908 6 C -0.541 4.541 7 H 0.040 0.960 8 C -0.170 4.170 9 N -0.592 5.592 10 Si 0.756 3.244 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.165 1.165 14 C 0.387 3.613 15 O -0.463 6.463 16 C -0.269 4.269 17 C -0.053 4.053 18 N -0.137 5.137 19 C -0.005 4.005 20 C -0.177 4.177 21 C -0.198 4.198 22 N -0.093 5.093 23 N -0.066 5.066 24 H 0.139 0.861 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.257 0.743 33 H 0.161 0.839 34 H 0.133 0.867 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.533 -14.488 -0.571 17.353 hybrid contribution -0.044 0.285 -0.130 0.317 sum 9.488 -14.203 -0.701 17.095 Atomic orbital electron populations 1.24067 0.94988 1.03206 0.98033 1.23169 0.96743 0.97735 1.02168 1.20638 0.91928 0.96526 0.89355 1.47819 1.08841 1.62289 1.11990 1.19918 0.95385 0.94482 0.80973 1.21219 1.37088 0.94519 1.01238 0.96049 1.25497 0.96226 0.95200 1.00047 1.70048 1.49809 1.12128 1.27193 0.85943 0.79162 0.79366 0.79914 1.19742 1.21015 1.16500 1.17050 0.81596 0.76436 0.86260 1.90659 1.76796 1.54063 1.24760 1.21589 0.97166 1.14430 0.93667 1.23758 0.93628 0.97568 0.90308 1.50935 1.14426 1.41579 1.06799 1.22599 0.75501 0.99007 1.03399 1.21802 0.98338 0.96973 1.00584 1.21650 0.93509 1.02345 1.02272 1.81954 0.91727 1.18359 1.17214 1.75096 1.18623 1.10515 1.02372 0.86051 0.87878 0.87501 0.90129 0.89764 0.94602 0.91979 0.92779 0.74251 0.83853 0.86707 0.92778 0.92571 0.92125 0.91119 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 14.32 67.78 0.97 -3.22 16 2 C -0.18 -5.51 9.84 25.64 0.25 -5.26 16 3 C 0.14 5.15 5.90 85.63 0.51 5.65 16 4 N -0.58 -25.89 2.46 -834.30 -2.05 -27.94 16 5 C 0.21 10.54 3.85 85.64 0.33 10.87 16 6 C -0.50 -29.42 8.93 25.60 0.23 -29.20 16 7 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 8 C 0.03 1.65 5.47 84.65 0.46 2.11 16 9 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 10 Si 0.93 45.73 27.47 68.60 1.88 47.61 16 11 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.24 -10.76 6.54 99.48 0.65 -10.11 16 14 C 0.60 26.33 7.61 86.69 0.66 26.99 16 15 O -0.58 -25.49 16.36 -4.03 -0.07 -25.56 16 16 C -0.13 -5.30 6.68 40.82 0.27 -5.03 16 17 C 0.11 3.13 11.28 83.85 0.95 4.07 16 18 N -0.35 -10.03 3.69 -347.09 -1.28 -11.31 16 19 C 0.11 1.81 6.54 86.38 0.56 2.37 16 20 C -0.14 -2.52 6.14 30.59 0.19 -2.33 16 21 C -0.14 -1.56 9.91 71.98 0.71 -0.85 16 22 N -0.11 -4.56 13.65 37.02 0.51 -4.05 16 23 N -0.19 -8.96 8.08 -49.99 -0.40 -9.37 16 24 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 25 H 0.10 2.53 7.84 -2.91 -0.02 2.51 16 26 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.08 3.01 7.76 -2.39 -0.02 2.99 16 28 H 0.08 3.16 7.23 -2.39 -0.02 3.14 16 29 H 0.04 1.70 7.08 -2.39 -0.02 1.68 16 30 H 0.06 3.12 4.72 -2.39 -0.01 3.11 16 31 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 32 H 0.24 4.69 8.06 -2.91 -0.02 4.67 16 33 H 0.14 1.09 8.08 -2.38 -0.02 1.07 16 34 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -79.70 334.99 5.96 -73.74 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.98 Total: 11.38 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.09 Total: 6.19 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -2.93 Total: -113.37 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.07 Total: -25.56 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -79.70 5.96 -73.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590039619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.668 kcal (2) G-P(sol) polarization free energy of solvation -79.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds