Wall clock time and date at job start Tue Mar 31 2020 00:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 C 1.50699 * 109.47247 * 240.00327 * 2 1 3 5 5 H 1.07997 * 120.00093 * 240.00710 * 4 2 1 6 6 C 1.37881 * 120.00049 * 59.99759 * 4 2 1 7 7 N 1.31515 * 119.99948 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47303 * 60.00178 * 8 6 4 10 10 H 1.48497 * 109.46927 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47186 * 299.99850 * 8 6 4 12 12 C 1.52998 * 109.47304 * 120.00361 * 2 1 3 13 13 N 1.46495 * 109.47253 * 299.99951 * 12 2 1 14 14 C 1.31875 * 120.00234 * 114.57917 * 13 12 2 15 15 N 1.38093 * 120.93724 * 353.99831 * 14 13 12 16 16 H 0.96998 * 120.13368 * 359.97438 * 15 14 13 17 17 C 1.35786 * 119.73020 * 179.71424 * 15 14 13 18 18 N 1.30260 * 121.71935 * 0.41823 * 17 15 14 19 19 C 1.34343 * 121.75970 * 359.97438 * 18 17 15 20 20 C 1.37752 * 120.15789 * 359.76936 * 19 18 17 21 21 O 1.35906 * 121.38782 * 180.37677 * 20 19 18 22 22 C 1.43062 * 117.63293 * 340.19491 * 21 20 19 23 23 C 1.53553 * 108.60554 * 48.42246 * 22 21 20 24 24 N 1.39172 * 120.09788 * 179.53844 * 19 18 17 25 25 H 1.09001 * 109.46903 * 300.00185 * 1 2 3 26 26 H 1.09002 * 109.47161 * 59.99537 * 1 2 3 27 27 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47566 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47547 * 299.99997 * 3 2 1 30 30 H 1.09000 * 109.46796 * 60.00636 * 3 2 1 31 31 H 0.96995 * 120.00156 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47361 * 179.97438 * 12 2 1 33 33 H 1.09005 * 109.47338 * 59.99771 * 12 2 1 34 34 H 1.08006 * 119.14031 * 180.39122 * 17 15 14 35 35 H 1.09006 * 109.60944 * 168.15353 * 22 21 20 36 36 H 1.08997 * 109.61066 * 288.67703 * 22 21 20 37 37 H 1.08991 * 109.83034 * 62.03198 * 23 22 21 38 38 H 1.08998 * 109.82587 * 182.90925 * 23 22 21 39 39 H 0.96997 * 121.04404 * 345.91122 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0079 10 1 1.8269 -0.4196 -5.2204 11 1 3.8064 -1.1206 -4.0083 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0308 2.4454 14 6 0.7079 -0.6363 3.2580 15 7 0.1767 -1.8704 2.9390 16 1 0.4214 -2.3057 2.1074 17 6 -0.6856 -2.4745 3.7965 18 7 -1.0376 -1.9167 4.9198 19 6 -0.5665 -0.7145 5.2905 20 6 0.3172 -0.0373 4.4793 21 8 0.8153 1.1766 4.8332 22 6 0.1000 1.9251 5.8206 23 6 -0.2071 1.0013 7.0081 24 7 -0.9733 -0.1463 6.4941 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 0.7095 1.1620 -3.4843 32 1 3.1300 -0.7217 1.2489 33 1 1.6767 -1.7490 1.2492 34 1 -1.0904 -3.4425 3.5403 35 1 0.7102 2.7633 6.1573 36 1 -0.8322 2.2957 5.3944 37 1 0.7235 0.6536 7.4565 38 1 -0.7974 1.5379 7.7509 39 1 -1.7375 -0.4953 6.9789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591175577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:03 Heat of formation + Delta-G solvation = 43.914081 kcal Electronic energy + Delta-G solvation = -22223.936213 eV Core-core repulsion = 18975.088969 eV Total energy + Delta-G solvation = -3248.847244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.95952 -38.77402 -36.73326 -35.39752 -33.79384 -32.46443 -31.27602 -29.57705 -27.67777 -25.56355 -25.48176 -25.07287 -24.37402 -22.28227 -21.14504 -18.73982 -18.56642 -18.35827 -16.78036 -16.47963 -15.83339 -15.52097 -15.18921 -14.71600 -14.38835 -14.23648 -13.88046 -13.71810 -13.25971 -13.01375 -12.57300 -12.10966 -11.70278 -11.49132 -11.42819 -11.10226 -11.01785 -10.69349 -10.63843 -10.19801 -10.08821 -9.97365 -9.64593 -9.38640 -9.13534 -8.86843 -8.39939 -8.36354 -8.23844 -6.48663 -5.89025 -4.01641 1.20805 2.36812 2.96387 3.05289 3.32259 3.37657 3.39677 3.78693 4.02546 4.41775 4.46110 4.61565 4.80796 4.97264 5.03717 5.33306 5.34834 5.49560 5.62414 5.68430 5.96063 6.12786 6.47675 6.59039 6.70016 6.84566 6.91804 7.18775 7.21716 7.37058 7.48545 7.54125 7.56043 7.71178 7.77126 7.82278 8.17831 8.20026 8.34675 8.53669 8.75532 9.00703 9.63398 11.10353 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032284 B = 0.004483 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.105075 B = 6244.216930 C = 6733.853571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.074 3.926 3 C -0.119 4.119 4 C -0.510 4.510 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.890 3.110 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.064 3.936 13 N -0.538 5.538 14 C 0.384 3.616 15 N -0.656 5.656 16 H 0.423 0.577 17 C 0.380 3.620 18 N -0.560 5.560 19 C 0.310 3.690 20 C -0.034 4.034 21 O -0.279 6.279 22 C 0.041 3.959 23 C 0.093 3.907 24 N -0.729 5.729 25 H 0.009 0.991 26 H 0.081 0.919 27 H 0.013 0.987 28 H 0.019 0.981 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.013 0.987 34 H 0.200 0.800 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -3.301 17.288 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 C -0.177 4.177 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.065 4.065 13 N -0.263 5.263 14 C 0.115 3.885 15 N -0.290 5.290 16 H 0.265 0.735 17 C 0.090 3.910 18 N -0.288 5.288 19 C 0.094 3.906 20 C -0.093 4.093 21 O -0.189 6.189 22 C -0.037 4.037 23 C -0.033 4.033 24 N -0.365 5.365 25 H 0.028 0.972 26 H 0.100 0.900 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.216 0.784 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.025 -2.269 17.583 18.427 hybrid contribution 0.099 -1.258 -1.603 2.040 sum -4.926 -3.527 15.981 17.090 Atomic orbital electron populations 1.21763 0.98388 0.97763 1.00370 1.18118 0.92101 0.93184 0.89294 1.21623 0.97772 0.98126 1.00152 1.21088 1.31382 1.11957 0.90479 0.92997 1.24896 0.94997 0.94921 0.98678 1.69839 1.36662 1.22658 1.23028 0.86710 0.79229 0.79666 0.82627 1.20473 1.21364 1.20363 1.22251 0.99208 0.94100 0.90980 1.73448 1.15526 1.29675 1.07613 1.19089 0.94448 0.81905 0.93059 1.44282 1.42002 1.19508 1.23256 0.73549 1.24377 0.85910 0.96407 0.84297 1.67490 1.31932 1.11678 1.17742 1.17702 0.95800 0.89329 0.87742 1.17639 1.08338 0.89285 0.94045 1.86163 1.48405 1.27304 1.57053 1.23217 0.98061 0.93627 0.88760 1.22251 0.96969 0.87430 0.96674 1.44016 1.35152 1.34919 1.22434 0.97185 0.89987 0.96826 0.96229 0.90724 0.96054 0.93110 0.91288 0.96896 0.78405 0.86935 0.91909 0.91129 0.88873 0.75734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.09 37.16 0.30 -2.82 16 2 C 0.07 1.87 0.57 -155.66 -0.09 1.79 16 3 C -0.12 -3.14 8.09 37.16 0.30 -2.84 16 4 C -0.51 -13.86 8.01 -34.44 -0.28 -14.14 16 5 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.93 9.35 55.43 0.52 -24.41 16 8 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.06 1.44 5.12 -4.05 -0.02 1.42 16 13 N -0.54 -11.76 8.88 -60.09 -0.53 -12.29 16 14 C 0.38 7.23 7.33 -155.43 -1.14 6.09 16 15 N -0.66 -9.68 5.28 -13.10 -0.07 -9.74 16 16 H 0.42 5.97 6.40 -40.82 -0.26 5.71 16 17 C 0.38 4.45 12.38 -89.89 -1.11 3.34 16 18 N -0.56 -7.63 10.40 -13.22 -0.14 -7.77 16 19 C 0.31 4.64 7.54 -153.68 -1.16 3.48 16 20 C -0.03 -0.60 6.58 -38.51 -0.25 -0.85 16 21 O -0.28 -4.85 10.14 -19.44 -0.20 -5.05 16 22 C 0.04 0.47 7.22 37.44 0.27 0.74 16 23 C 0.09 0.85 7.35 -3.34 -0.02 0.82 16 24 N -0.73 -8.35 5.92 -59.47 -0.35 -8.70 16 25 H 0.01 0.23 7.45 -51.93 -0.39 -0.16 16 26 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 2.11 6.07 -51.93 -0.32 1.79 16 30 H 0.02 0.54 7.60 -51.93 -0.39 0.14 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.01 0.26 5.60 -51.93 -0.29 -0.03 16 34 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.41 3.85 8.96 -40.82 -0.37 3.48 16 LS Contribution 313.54 15.07 4.72 4.72 Total: -1.00 -33.79 313.54 -9.62 -43.41 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.25 Total: 4.97 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.30 Total: -1.26 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.57 Total: -62.91 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.20 Total: -5.05 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.79 -9.62 -43.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591175577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.321 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds