Wall clock time and date at job start Tue Mar 31 2020 00:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 C 1.50699 * 109.47247 * 240.00327 * 2 1 3 5 5 H 1.07997 * 120.00093 * 240.00710 * 4 2 1 6 6 C 1.37881 * 120.00049 * 59.99759 * 4 2 1 7 7 N 1.31515 * 119.99948 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47303 * 60.00178 * 8 6 4 10 10 H 1.48497 * 109.46927 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47186 * 299.99850 * 8 6 4 12 12 C 1.52998 * 109.47304 * 120.00361 * 2 1 3 13 13 N 1.46495 * 109.47253 * 299.99951 * 12 2 1 14 14 C 1.31875 * 120.00234 * 114.57917 * 13 12 2 15 15 N 1.38093 * 120.93724 * 353.99831 * 14 13 12 16 16 H 0.96998 * 120.13368 * 359.97438 * 15 14 13 17 17 C 1.35786 * 119.73020 * 179.71424 * 15 14 13 18 18 N 1.30260 * 121.71935 * 0.41823 * 17 15 14 19 19 C 1.34343 * 121.75970 * 359.97438 * 18 17 15 20 20 C 1.37752 * 120.15789 * 359.76936 * 19 18 17 21 21 O 1.35906 * 121.38782 * 180.37677 * 20 19 18 22 22 C 1.43062 * 117.63293 * 340.19491 * 21 20 19 23 23 C 1.53553 * 108.60554 * 48.42246 * 22 21 20 24 24 N 1.39172 * 120.09788 * 179.53844 * 19 18 17 25 25 H 1.09001 * 109.46903 * 300.00185 * 1 2 3 26 26 H 1.09002 * 109.47161 * 59.99537 * 1 2 3 27 27 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47566 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47547 * 299.99997 * 3 2 1 30 30 H 1.09000 * 109.46796 * 60.00636 * 3 2 1 31 31 H 0.96995 * 120.00156 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47361 * 179.97438 * 12 2 1 33 33 H 1.09005 * 109.47338 * 59.99771 * 12 2 1 34 34 H 1.08006 * 119.14031 * 180.39122 * 17 15 14 35 35 H 1.09006 * 109.60944 * 168.15353 * 22 21 20 36 36 H 1.08997 * 109.61066 * 288.67703 * 22 21 20 37 37 H 1.08991 * 109.83034 * 62.03198 * 23 22 21 38 38 H 1.08998 * 109.82587 * 182.90925 * 23 22 21 39 39 H 0.96997 * 121.04404 * 345.91122 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0079 10 1 1.8269 -0.4196 -5.2204 11 1 3.8064 -1.1206 -4.0083 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0308 2.4454 14 6 0.7079 -0.6363 3.2580 15 7 0.1767 -1.8704 2.9390 16 1 0.4214 -2.3057 2.1074 17 6 -0.6856 -2.4745 3.7965 18 7 -1.0376 -1.9167 4.9198 19 6 -0.5665 -0.7145 5.2905 20 6 0.3172 -0.0373 4.4793 21 8 0.8153 1.1766 4.8332 22 6 0.1000 1.9251 5.8206 23 6 -0.2071 1.0013 7.0081 24 7 -0.9733 -0.1463 6.4941 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9562 0.8901 31 1 0.7095 1.1620 -3.4843 32 1 3.1300 -0.7217 1.2489 33 1 1.6767 -1.7490 1.2492 34 1 -1.0904 -3.4425 3.5403 35 1 0.7102 2.7633 6.1573 36 1 -0.8322 2.2957 5.3944 37 1 0.7235 0.6536 7.4565 38 1 -0.7974 1.5379 7.7509 39 1 -1.7375 -0.4953 6.9789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591175577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:03 Heat of formation + Delta-G solvation = 20.559360 kcal Electronic energy + Delta-G solvation = -22224.948949 eV Core-core repulsion = 18975.088969 eV Total energy + Delta-G solvation = -3249.859981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10600 -39.88234 -38.34262 -36.76146 -35.13161 -33.72876 -33.01512 -30.90416 -28.84372 -27.57150 -27.30321 -26.64880 -25.71185 -23.39998 -22.36896 -20.41322 -19.71641 -19.59570 -18.04816 -17.77562 -17.54930 -16.82130 -16.53638 -16.23767 -15.54882 -15.39496 -15.05260 -15.00344 -14.72196 -14.48149 -14.14898 -13.85436 -13.34711 -13.11376 -12.74527 -12.68914 -12.56195 -12.35872 -12.31565 -12.17880 -12.10232 -11.42834 -11.38412 -10.97641 -10.73344 -10.48930 -10.37292 -9.97511 -9.53644 -7.99432 -7.73413 -6.15845 0.10065 1.10146 1.44471 1.46305 1.53113 1.83425 2.12001 2.46691 2.72264 2.86205 3.24894 3.40689 3.72606 3.87847 4.17812 4.20787 4.35428 4.39984 4.50742 4.63300 4.69727 4.79085 4.85524 4.88685 4.93549 5.13572 5.18931 5.37075 5.38759 5.48989 5.65584 5.68555 5.75054 6.10500 6.19190 6.29905 6.47119 6.60626 6.64880 6.91578 7.11284 7.39123 7.52916 9.01827 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032284 B = 0.004483 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.105075 B = 6244.216930 C = 6733.853571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.065 3.935 3 C -0.104 4.104 4 C -0.526 4.526 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.908 5.908 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.080 3.920 13 N -0.599 5.599 14 C 0.393 3.607 15 N -0.654 5.654 16 H 0.426 0.574 17 C 0.396 3.604 18 N -0.571 5.571 19 C 0.335 3.665 20 C -0.091 4.091 21 O -0.316 6.316 22 C 0.030 3.970 23 C 0.095 3.905 24 N -0.717 5.717 25 H 0.005 0.995 26 H 0.053 0.947 27 H 0.025 0.975 28 H 0.010 0.990 29 H 0.051 0.949 30 H 0.016 0.984 31 H 0.257 0.743 32 H 0.048 0.952 33 H 0.030 0.970 34 H 0.258 0.742 35 H 0.136 0.864 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 -5.233 18.983 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.064 3.936 3 C -0.162 4.162 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.050 4.050 13 N -0.327 5.327 14 C 0.125 3.875 15 N -0.286 5.286 16 H 0.268 0.732 17 C 0.108 3.892 18 N -0.299 5.299 19 C 0.115 3.885 20 C -0.150 4.150 21 O -0.229 6.229 22 C -0.046 4.046 23 C -0.029 4.029 24 N -0.353 5.353 25 H 0.024 0.976 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.274 0.726 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.389 -4.232 19.328 20.792 hybrid contribution 0.352 -0.698 -1.898 2.053 sum -6.037 -4.930 17.431 19.094 Atomic orbital electron populations 1.21493 0.98159 0.97919 0.98567 1.18157 0.92261 0.92461 0.90695 1.21453 0.96948 0.99201 0.98577 1.21388 1.31473 1.12171 0.91445 0.92904 1.25628 0.95160 0.95572 1.01458 1.69994 1.37486 1.23767 1.23423 0.85719 0.78531 0.78945 0.79010 1.19318 1.21335 1.20244 1.21841 0.97982 0.94630 0.90519 1.73443 1.19557 1.31069 1.08600 1.19440 0.92722 0.82636 0.92687 1.44388 1.41906 1.18521 1.23829 0.73190 1.25633 0.83488 0.97384 0.82690 1.67688 1.32441 1.11141 1.18622 1.18023 0.93452 0.89074 0.87965 1.17750 1.11573 0.90676 0.95018 1.86090 1.50066 1.27742 1.58960 1.23540 0.98034 0.94394 0.88639 1.22457 0.97762 0.86427 0.96284 1.44265 1.35185 1.34799 1.21059 0.97604 0.92813 0.95546 0.97102 0.93042 0.96516 0.93311 0.93374 0.95214 0.72619 0.84652 0.92538 0.90854 0.84402 0.74271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.26 8.09 71.98 0.58 -4.68 16 2 C 0.07 3.39 0.57 -52.93 -0.03 3.36 16 3 C -0.10 -5.73 8.09 71.98 0.58 -5.15 16 4 C -0.53 -28.90 8.01 25.60 0.21 -28.69 16 5 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 6 C 0.02 1.14 5.15 84.66 0.44 1.57 16 7 N -0.91 -52.28 9.35 21.45 0.20 -52.08 16 8 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.08 3.69 5.12 86.38 0.44 4.13 16 13 N -0.60 -26.94 8.88 -344.04 -3.06 -30.00 16 14 C 0.39 14.77 7.33 134.12 0.98 15.76 16 15 N -0.65 -18.17 5.28 -195.35 -1.03 -19.20 16 16 H 0.43 11.28 6.40 -92.71 -0.59 10.69 16 17 C 0.40 7.90 12.38 180.09 2.23 10.13 16 18 N -0.57 -13.74 10.40 -195.74 -2.03 -15.77 16 19 C 0.33 9.33 7.54 132.09 1.00 10.33 16 20 C -0.09 -3.17 6.58 22.97 0.15 -3.02 16 21 O -0.32 -11.20 10.14 -92.49 -0.94 -12.14 16 22 C 0.03 0.67 7.22 72.17 0.52 1.19 16 23 C 0.10 1.47 7.35 86.42 0.64 2.11 16 24 N -0.72 -14.35 5.92 -342.05 -2.03 -16.37 16 25 H 0.00 0.25 7.45 -2.39 -0.02 0.24 16 26 H 0.05 3.02 6.07 -2.39 -0.01 3.01 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 3.03 6.07 -2.39 -0.01 3.02 16 30 H 0.02 0.88 7.60 -2.39 -0.02 0.86 16 31 H 0.26 14.26 8.31 -92.71 -0.77 13.48 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 1.20 5.60 -2.38 -0.01 1.19 16 34 H 0.26 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.14 2.21 8.14 -2.38 -0.02 2.19 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.42 6.41 8.96 -92.71 -0.83 5.57 16 Total: -1.00 -76.50 313.54 0.54 -75.95 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.33 Total: 17.11 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 7.74 Total: 7.03 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -7.95 Total: -133.43 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.94 Total: -12.14 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -76.50 0.54 -75.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591175577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.512 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds