Wall clock time and date at job start Tue Mar 31 2020 01:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99735 * 2 1 4 4 N 1.46504 * 109.47057 * 125.00547 * 3 2 1 5 5 C 1.34813 * 126.59655 * 125.00048 * 4 3 2 6 6 C 1.36588 * 106.83902 * 180.24323 * 5 4 3 7 7 C 1.47528 * 125.76845 * 179.71127 * 6 5 4 8 8 O 1.21590 * 120.00210 * 353.65170 * 7 6 5 9 9 N 1.34776 * 119.99714 * 173.64843 * 7 6 5 10 10 C 1.46501 * 120.00231 * 3.65149 * 9 7 6 11 11 C 1.50701 * 109.47110 * 83.32489 * 10 9 7 12 12 H 1.08001 * 119.99986 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00183 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99621 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00269 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47286 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47266 * 119.99482 * 15 13 11 18 18 H 1.48497 * 109.47306 * 239.99585 * 15 13 11 19 19 C 1.46500 * 119.99744 * 183.64333 * 9 7 6 20 20 C 1.53002 * 109.46781 * 114.98338 * 19 9 7 21 21 C 1.53000 * 109.47580 * 234.98261 * 19 9 7 22 22 N 1.34397 * 108.45903 * 359.56945 * 6 5 4 23 23 N 1.28753 * 109.52548 * 0.44342 * 22 6 5 24 24 H 1.08000 * 120.00388 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99770 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00009 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47650 * 5.00632 * 3 2 1 28 28 H 1.08997 * 109.47330 * 245.00221 * 3 2 1 29 29 H 1.08007 * 126.57772 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46850 * 203.32244 * 10 9 7 31 31 H 1.08994 * 109.47196 * 323.32314 * 10 9 7 32 32 H 0.96998 * 120.00144 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.47396 * 354.98729 * 19 9 7 34 34 H 1.09003 * 109.47466 * 60.00466 * 20 19 9 35 35 H 1.09005 * 109.47087 * 180.02562 * 20 19 9 36 36 H 1.09000 * 109.47333 * 299.99713 * 20 19 9 37 37 H 1.08999 * 109.47206 * 60.00157 * 21 19 9 38 38 H 1.08994 * 109.47365 * 180.02562 * 21 19 9 39 39 H 1.09004 * 109.47137 * 300.00626 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3230 1.5498 1.0740 6 6 4.7909 1.4811 2.3554 7 6 6.1962 1.6522 2.7705 8 8 7.0693 1.7605 1.9312 9 7 6.5123 1.6884 4.0802 10 6 5.4727 1.4781 5.0908 11 6 5.2614 -0.0001 5.2940 12 1 5.8430 -0.7117 4.7268 13 6 4.3248 -0.4441 6.2032 14 7 3.6162 0.4224 6.8935 15 14 4.0625 -2.2764 6.4546 16 1 4.9771 -3.0343 5.5634 17 1 4.3458 -2.6275 7.8695 18 1 2.6556 -2.6241 6.1305 19 6 7.8955 1.9380 4.4932 20 6 7.9713 3.2694 5.2434 21 6 8.3656 0.8079 5.4112 22 7 3.7542 1.2345 3.1743 23 7 2.6730 1.1363 2.4822 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 4.9066 1.7377 0.1848 30 1 5.7828 1.9335 6.0313 31 1 4.5419 1.9354 4.7552 32 1 2.9576 0.1102 7.5335 33 1 8.5358 1.9806 3.6121 34 1 7.3311 3.2269 6.1246 35 1 9.0006 3.4553 5.5504 36 1 7.6365 4.0745 4.5895 37 1 8.3116 -0.1406 4.8768 38 1 9.3945 0.9939 5.7189 39 1 7.7253 0.7654 6.2924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592755997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:16 Heat of formation + Delta-G solvation = 95.261942 kcal Electronic energy + Delta-G solvation = -22161.469925 eV Core-core repulsion = 18914.849292 eV Total energy + Delta-G solvation = -3246.620634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.56479 -38.84707 -35.83231 -35.68567 -32.89908 -32.41821 -31.28848 -29.87643 -27.05209 -26.90145 -26.47401 -23.34096 -22.75652 -21.87549 -20.59472 -20.07822 -18.45234 -17.12475 -16.31288 -15.92958 -15.49708 -15.32605 -15.17580 -14.26318 -14.18349 -14.11861 -13.48515 -13.40609 -12.96399 -12.47949 -12.31803 -12.16452 -11.66844 -11.63655 -11.56482 -11.51958 -11.22098 -10.83661 -10.77393 -10.66651 -10.32102 -10.02189 -9.80704 -9.73470 -9.58660 -9.40344 -9.17906 -8.66443 -8.22476 -7.55099 -5.88585 -3.88635 1.63838 1.82949 2.57323 2.73276 3.36920 3.44888 3.48335 3.92707 4.10181 4.47103 4.56266 4.61525 4.84881 4.89534 5.26449 5.27324 5.47969 5.49641 5.61806 5.64196 5.77022 5.85881 5.91145 6.17702 6.25529 6.28696 6.33604 6.42153 6.47439 6.50032 6.81808 6.83291 6.98761 7.10484 7.63030 7.83300 8.03744 8.39582 8.43218 8.71486 9.04573 9.15437 9.73138 11.20042 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.007318 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.874657 B = 3825.072107 C = 5414.861660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.174 4.174 3 C 0.155 3.845 4 N -0.375 5.375 5 C 0.070 3.930 6 C -0.089 4.089 7 C 0.599 3.401 8 O -0.581 6.581 9 N -0.575 5.575 10 C 0.229 3.771 11 C -0.504 4.504 12 H 0.052 0.948 13 C 0.071 3.929 14 N -0.887 5.887 15 Si 0.884 3.116 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.135 3.865 20 C -0.158 4.158 21 C -0.151 4.151 22 N -0.133 5.133 23 N -0.078 5.078 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.195 0.805 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.259 0.741 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 3.488 -12.144 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.192 4.192 3 C 0.034 3.966 4 N -0.160 5.160 5 C -0.086 4.086 6 C -0.227 4.227 7 C 0.386 3.614 8 O -0.463 6.463 9 N -0.303 5.303 10 C 0.110 3.890 11 C -0.543 4.543 12 H 0.070 0.930 13 C -0.131 4.131 14 N -0.527 5.527 15 Si 0.713 3.287 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.212 1.212 19 C 0.031 3.969 20 C -0.216 4.216 21 C -0.209 4.209 22 N -0.006 5.006 23 N -0.058 5.058 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.211 0.789 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.062 3.290 -11.426 12.068 hybrid contribution 0.312 -1.077 -0.541 1.245 sum -1.750 2.213 -11.967 12.295 Atomic orbital electron populations 1.23916 0.95501 1.02516 0.97498 1.22910 0.96348 0.97680 1.02300 1.20913 0.91949 0.97662 0.86094 1.50615 1.06299 1.49665 1.09441 1.23169 0.84820 1.00170 1.00420 1.21482 0.95933 1.15352 0.89942 1.16814 0.85075 0.76575 0.82946 1.90664 1.48649 1.55007 1.52011 1.48236 1.09797 1.66214 1.06074 1.19835 0.85930 0.97402 0.85878 1.21253 1.20103 0.91354 1.21623 0.92998 1.24743 0.95536 0.96837 0.95942 1.69920 1.24035 1.33127 1.25584 0.86671 0.77945 0.86539 0.77593 1.20131 1.21228 1.21165 1.20904 0.83636 0.94460 0.97867 1.22135 1.01432 0.96977 1.01073 1.22043 0.99727 0.98184 1.00946 1.75411 0.95370 1.06094 1.23723 1.82196 1.18932 1.22418 0.82281 0.88063 0.87678 0.86594 0.88621 0.87575 0.78865 0.95063 0.91402 0.93163 0.89560 0.91731 0.92307 0.93048 0.92585 0.93243 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 14.32 29.01 0.42 -1.00 16 2 C -0.17 -1.81 9.72 -36.03 -0.35 -2.16 16 3 C 0.16 1.56 6.98 -5.19 -0.04 1.52 16 4 N -0.38 -5.85 3.68 -62.24 -0.23 -6.08 16 5 C 0.07 1.14 11.28 -16.84 -0.19 0.95 16 6 C -0.09 -1.87 6.67 -83.55 -0.56 -2.43 16 7 C 0.60 13.39 7.61 -12.47 -0.09 13.30 16 8 O -0.58 -13.19 16.21 5.29 0.09 -13.10 16 9 N -0.57 -12.83 2.37 -168.69 -0.40 -13.23 16 10 C 0.23 5.76 3.91 -5.19 -0.02 5.74 16 11 C -0.50 -13.73 7.42 -34.44 -0.26 -13.99 16 12 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 13 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 14 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 15 Si 0.88 22.08 29.54 -169.99 -5.02 17.05 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 C 0.14 2.58 3.23 -67.93 -0.22 2.36 16 20 C -0.16 -2.61 9.26 37.16 0.34 -2.26 16 21 C -0.15 -2.78 8.65 37.16 0.32 -2.46 16 22 N -0.13 -3.10 8.05 32.85 0.26 -2.84 16 23 N -0.08 -1.63 13.64 60.35 0.82 -0.81 16 24 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 25 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 26 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.10 0.82 7.79 -51.93 -0.40 0.42 16 28 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.19 2.37 8.06 -52.48 -0.42 1.95 16 30 H 0.03 0.82 6.49 -51.93 -0.34 0.48 16 31 H 0.07 1.84 5.34 -51.93 -0.28 1.57 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.09 1.65 6.91 -51.93 -0.36 1.29 16 34 H 0.06 1.13 6.91 -51.93 -0.36 0.77 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.53 7.08 -51.93 -0.37 1.16 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -33.20 331.89 -4.92 -38.12 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.44 Total: -0.59 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.74 Total: 1.47 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 1.19 Total: -47.95 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.20 -4.92 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.381 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds