Wall clock time and date at job start Tue Mar 31 2020 01:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99735 * 2 1 4 4 N 1.46504 * 109.47057 * 125.00547 * 3 2 1 5 5 C 1.34813 * 126.59655 * 125.00048 * 4 3 2 6 6 C 1.36588 * 106.83902 * 180.24323 * 5 4 3 7 7 C 1.47528 * 125.76845 * 179.71127 * 6 5 4 8 8 O 1.21590 * 120.00210 * 353.65170 * 7 6 5 9 9 N 1.34776 * 119.99714 * 173.64843 * 7 6 5 10 10 C 1.46501 * 120.00231 * 3.65149 * 9 7 6 11 11 C 1.50701 * 109.47110 * 83.32489 * 10 9 7 12 12 H 1.08001 * 119.99986 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00183 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99621 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00269 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47286 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47266 * 119.99482 * 15 13 11 18 18 H 1.48497 * 109.47306 * 239.99585 * 15 13 11 19 19 C 1.46500 * 119.99744 * 183.64333 * 9 7 6 20 20 C 1.53002 * 109.46781 * 114.98338 * 19 9 7 21 21 C 1.53000 * 109.47580 * 234.98261 * 19 9 7 22 22 N 1.34397 * 108.45903 * 359.56945 * 6 5 4 23 23 N 1.28753 * 109.52548 * 0.44342 * 22 6 5 24 24 H 1.08000 * 120.00388 * 359.97438 * 1 2 3 25 25 H 1.08001 * 119.99770 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00009 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47650 * 5.00632 * 3 2 1 28 28 H 1.08997 * 109.47330 * 245.00221 * 3 2 1 29 29 H 1.08007 * 126.57772 * 359.97438 * 5 4 3 30 30 H 1.08999 * 109.46850 * 203.32244 * 10 9 7 31 31 H 1.08994 * 109.47196 * 323.32314 * 10 9 7 32 32 H 0.96998 * 120.00144 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.47396 * 354.98729 * 19 9 7 34 34 H 1.09003 * 109.47466 * 60.00466 * 20 19 9 35 35 H 1.09005 * 109.47087 * 180.02562 * 20 19 9 36 36 H 1.09000 * 109.47333 * 299.99713 * 20 19 9 37 37 H 1.08999 * 109.47206 * 60.00157 * 21 19 9 38 38 H 1.08994 * 109.47365 * 180.02562 * 21 19 9 39 39 H 1.09004 * 109.47137 * 300.00626 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3230 1.5498 1.0740 6 6 4.7909 1.4811 2.3554 7 6 6.1962 1.6522 2.7705 8 8 7.0693 1.7605 1.9312 9 7 6.5123 1.6884 4.0802 10 6 5.4727 1.4781 5.0908 11 6 5.2614 -0.0001 5.2940 12 1 5.8430 -0.7117 4.7268 13 6 4.3248 -0.4441 6.2032 14 7 3.6162 0.4224 6.8935 15 14 4.0625 -2.2764 6.4546 16 1 4.9771 -3.0343 5.5634 17 1 4.3458 -2.6275 7.8695 18 1 2.6556 -2.6241 6.1305 19 6 7.8955 1.9380 4.4932 20 6 7.9713 3.2694 5.2434 21 6 8.3656 0.8079 5.4112 22 7 3.7542 1.2345 3.1743 23 7 2.6730 1.1363 2.4822 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 4.9066 1.7377 0.1848 30 1 5.7828 1.9335 6.0313 31 1 4.5419 1.9354 4.7552 32 1 2.9576 0.1102 7.5335 33 1 8.5358 1.9806 3.6121 34 1 7.3311 3.2269 6.1246 35 1 9.0006 3.4553 5.5504 36 1 7.6365 4.0745 4.5895 37 1 8.3116 -0.1406 4.8768 38 1 9.3945 0.9939 5.7189 39 1 7.7253 0.7654 6.2924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:15 Heat of formation + Delta-G solvation = 73.663888 kcal Electronic energy + Delta-G solvation = -22162.406487 eV Core-core repulsion = 18914.849292 eV Total energy + Delta-G solvation = -3247.557196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.99682 -40.51531 -37.38254 -36.81738 -34.77536 -33.72797 -32.94984 -31.31978 -29.04023 -27.95526 -27.90203 -25.06952 -24.58636 -23.17391 -22.00068 -21.03163 -19.97536 -18.71866 -18.27165 -17.50209 -16.89161 -16.81197 -16.25458 -16.03259 -15.71719 -15.44350 -14.97144 -14.63090 -14.51620 -14.16768 -13.81358 -13.48409 -13.35987 -13.20495 -12.94164 -12.80357 -12.72628 -12.65356 -12.33031 -12.23446 -12.12740 -11.57889 -11.45369 -11.40217 -11.15224 -10.90205 -10.51498 -10.35596 -10.11328 -9.34324 -8.02825 -6.07883 0.33221 0.92089 0.95263 1.36563 1.39471 1.48195 1.72388 2.29939 2.44751 2.52641 3.30704 3.45788 3.60354 3.83177 3.88397 4.09570 4.14445 4.18198 4.31532 4.46734 4.55704 4.60375 4.74867 4.83403 4.86012 4.93203 5.00426 5.02926 5.21737 5.36823 5.52696 5.56673 5.58716 5.60078 5.73606 5.89690 5.99610 6.29654 6.60922 6.95681 7.20239 7.41808 7.57223 9.05004 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.007318 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.874657 B = 3825.072107 C = 5414.861660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.197 4.197 3 C 0.144 3.856 4 N -0.354 5.354 5 C 0.102 3.898 6 C -0.131 4.131 7 C 0.594 3.406 8 O -0.590 6.590 9 N -0.582 5.582 10 C 0.251 3.749 11 C -0.497 4.497 12 H 0.035 0.965 13 C 0.029 3.971 14 N -0.915 5.915 15 Si 0.936 3.064 16 H -0.278 1.278 17 H -0.275 1.275 18 H -0.288 1.288 19 C 0.126 3.874 20 C -0.149 4.149 21 C -0.142 4.142 22 N -0.180 5.180 23 N -0.112 5.112 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.150 0.850 29 H 0.240 0.760 30 H 0.016 0.984 31 H 0.052 0.948 32 H 0.259 0.741 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 3.697 -13.985 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.216 4.216 3 C 0.026 3.974 4 N -0.139 5.139 5 C -0.056 4.056 6 C -0.271 4.271 7 C 0.382 3.618 8 O -0.473 6.473 9 N -0.311 5.311 10 C 0.130 3.870 11 C -0.536 4.536 12 H 0.053 0.947 13 C -0.170 4.170 14 N -0.556 5.556 15 Si 0.763 3.237 16 H -0.202 1.202 17 H -0.201 1.201 18 H -0.214 1.214 19 C 0.023 3.977 20 C -0.207 4.207 21 C -0.200 4.200 22 N -0.052 5.052 23 N -0.092 5.092 24 H 0.136 0.864 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.167 0.833 29 H 0.256 0.744 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.887 3.491 -13.271 13.852 hybrid contribution 0.197 -1.124 -0.154 1.151 sum -1.690 2.367 -13.425 13.736 Atomic orbital electron populations 1.24166 0.95208 1.03698 0.95214 1.22895 0.96902 0.97419 1.04356 1.21520 0.92184 0.98122 0.85593 1.50958 1.06931 1.46874 1.09105 1.23741 0.84971 0.96902 1.00012 1.21661 0.95305 1.18257 0.91830 1.17075 0.85842 0.76141 0.82770 1.90632 1.49087 1.55664 1.51888 1.48260 1.10487 1.66531 1.05829 1.19349 0.86118 0.95863 0.85717 1.21272 1.19403 0.92107 1.20809 0.94704 1.25332 0.95544 1.00141 0.96019 1.70010 1.24714 1.34560 1.26314 0.85855 0.77411 0.82558 0.77849 1.20248 1.20106 1.21390 1.21185 0.82096 0.95999 0.98391 1.22060 1.03289 0.95365 0.99945 1.21960 1.01493 0.97141 0.99402 1.75352 0.96452 1.07675 1.25733 1.82043 1.18568 1.23867 0.84717 0.86427 0.87041 0.87929 0.86619 0.83259 0.74423 0.96583 0.93070 0.93163 0.89215 0.93307 0.88829 0.93026 0.94444 0.89385 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 14.32 67.78 0.97 -1.33 16 2 C -0.20 -3.72 9.72 25.64 0.25 -3.47 16 3 C 0.14 2.43 6.98 85.63 0.60 3.03 16 4 N -0.35 -10.37 3.68 -350.83 -1.29 -11.66 16 5 C 0.10 3.10 11.28 83.85 0.95 4.04 16 6 C -0.13 -5.52 6.67 40.82 0.27 -5.25 16 7 C 0.59 26.65 7.61 86.69 0.66 27.30 16 8 O -0.59 -26.28 16.21 -4.00 -0.06 -26.34 16 9 N -0.58 -26.46 2.37 -805.88 -1.91 -28.38 16 10 C 0.25 13.03 3.91 85.63 0.33 13.37 16 11 C -0.50 -27.84 7.42 25.60 0.19 -27.65 16 12 H 0.03 2.03 7.81 -2.91 -0.02 2.01 16 13 C 0.03 1.64 5.46 84.65 0.46 2.11 16 14 N -0.92 -54.36 13.29 21.45 0.28 -54.08 16 15 Si 0.94 46.02 29.54 68.60 2.03 48.05 16 16 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 19 C 0.13 4.78 3.23 44.99 0.15 4.92 16 20 C -0.15 -4.76 9.26 71.98 0.67 -4.10 16 21 C -0.14 -5.20 8.65 71.98 0.62 -4.57 16 22 N -0.18 -8.59 8.05 -50.00 -0.40 -8.99 16 23 N -0.11 -4.68 13.64 37.02 0.50 -4.17 16 24 H 0.12 1.47 7.84 -2.91 -0.02 1.44 16 25 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 26 H 0.10 2.20 8.06 -2.91 -0.02 2.18 16 27 H 0.12 1.57 7.79 -2.39 -0.02 1.55 16 28 H 0.15 1.26 8.08 -2.39 -0.02 1.24 16 29 H 0.24 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.02 0.88 6.49 -2.39 -0.02 0.86 16 31 H 0.05 2.91 5.34 -2.39 -0.01 2.89 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.09 3.35 6.91 -2.39 -0.02 3.33 16 34 H 0.05 1.71 6.91 -2.39 -0.02 1.69 16 35 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.05 2.09 7.08 -2.39 -0.02 2.07 16 Total: -1.00 -74.61 331.89 6.30 -68.31 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.04 Total: 8.87 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.12 Total: 8.40 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -2.82 Total: -107.28 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.06 Total: -26.34 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.61 6.30 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.970 kcal (2) G-P(sol) polarization free energy of solvation -74.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds