Wall clock time and date at job start Tue Mar 31 2020 01:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47152 * 2 1 4 4 O 1.21284 * 119.99769 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00357 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00264 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47001 * 180.02562 * 6 5 3 8 8 C 1.35348 * 126.75758 * 95.00030 * 7 6 5 9 9 N 1.35308 * 106.17926 * 179.97438 * 8 7 6 10 10 C 1.46500 * 125.86894 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47221 * 123.94660 * 10 9 8 12 12 C 1.50698 * 115.55023 * 295.27239 * 11 10 9 13 13 H 1.08000 * 120.00646 * 99.43029 * 12 11 10 14 14 C 1.37880 * 119.99592 * 279.42932 * 12 11 10 15 15 N 1.31516 * 120.00296 * 5.61487 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 185.62000 * 14 12 11 17 17 H 1.48505 * 109.46973 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47082 * 299.99613 * 16 14 12 19 19 H 1.48502 * 109.46939 * 59.99866 * 16 14 12 20 20 C 1.52999 * 117.51854 * 80.96646 * 11 10 9 21 21 C 1.53001 * 117.49951 * 149.59683 * 11 10 9 22 22 N 1.28721 * 108.26434 * 0.26294 * 9 8 7 23 23 N 1.28635 * 110.17513 * 359.56179 * 22 9 8 24 24 H 1.08997 * 109.46722 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47333 * 300.00067 * 1 2 3 26 26 H 1.09000 * 109.46821 * 60.00396 * 1 2 3 27 27 H 1.08993 * 109.47730 * 239.99685 * 2 1 3 28 28 H 1.09008 * 109.46964 * 119.99386 * 2 1 3 29 29 H 0.97003 * 119.99637 * 0.02562 * 5 3 2 30 30 H 1.08998 * 109.46910 * 60.00338 * 6 5 3 31 31 H 1.09000 * 109.47172 * 300.00053 * 6 5 3 32 32 H 1.08005 * 126.90772 * 359.97438 * 8 7 6 33 33 H 1.08996 * 109.47226 * 3.94839 * 10 9 8 34 34 H 1.09001 * 109.47006 * 243.94736 * 10 9 8 35 35 H 0.96998 * 120.00163 * 175.32739 * 15 14 12 36 36 H 1.08997 * 117.50526 * 214.97111 * 20 11 10 37 37 H 1.09005 * 117.50022 * 359.97438 * 20 11 10 38 38 H 1.09002 * 117.50086 * 359.97367 * 21 11 10 39 39 H 1.08999 * 117.49634 * 145.00508 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3527 3.0484 0.0001 8 6 6.1628 3.1424 -1.0801 9 7 7.4295 3.1017 -0.6062 10 6 8.6504 3.1727 -1.4127 11 6 9.5200 4.3314 -0.9207 12 6 8.9290 5.7067 -1.0940 13 1 8.4533 6.1993 -0.2588 14 6 8.9956 6.3363 -2.3188 15 7 9.4747 5.6954 -3.3625 16 14 8.4054 8.0998 -2.4959 17 1 8.5831 8.5424 -3.9022 18 1 6.9688 8.1802 -2.1289 19 1 9.1959 8.9789 -1.5971 20 6 10.3910 4.0872 0.3132 21 6 11.0361 4.1899 -1.0703 22 7 7.3774 2.9849 0.6746 23 7 6.1530 2.9559 1.0681 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.9878 0.9299 0.0005 30 1 3.4820 3.5627 0.8895 31 1 3.4828 3.5617 -0.8905 32 1 5.8591 3.2319 -2.1128 33 1 8.3867 3.3347 -2.4578 34 1 9.2031 2.2380 -1.3182 35 1 9.4591 6.1135 -4.2376 36 1 10.5366 4.9212 0.9997 37 1 10.3443 3.1009 0.7751 38 1 11.4141 3.2712 -1.5189 39 1 11.6060 5.0917 -1.2941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594652089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:08 Heat of formation + Delta-G solvation = 72.096762 kcal Electronic energy + Delta-G solvation = -21158.171808 eV Core-core repulsion = 17910.546657 eV Total energy + Delta-G solvation = -3247.625151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.67654 -39.63890 -37.04484 -35.13043 -33.21952 -32.89672 -32.17150 -30.90999 -27.46542 -26.63666 -25.57226 -23.92076 -21.70607 -21.23549 -20.95939 -20.33368 -19.36070 -17.42773 -16.73421 -16.17351 -15.81053 -15.63337 -15.36137 -14.80140 -14.44650 -14.11586 -13.91818 -13.66833 -13.29046 -12.96970 -12.50052 -12.40481 -12.04474 -11.91155 -11.78104 -11.33301 -11.19683 -11.09376 -10.99304 -10.69283 -10.45460 -10.33931 -10.14011 -9.92885 -9.35581 -9.05716 -9.05434 -8.76487 -8.66598 -8.39255 -6.28101 -4.35043 2.17812 2.63155 2.73292 3.09549 3.19083 3.23832 3.28611 3.53196 4.23676 4.61442 4.69613 4.91764 4.92193 4.99274 5.07606 5.19498 5.36930 5.41081 5.56638 5.60371 5.70203 5.75221 5.76328 5.93749 6.03707 6.03945 6.23316 6.31797 6.39595 6.48725 6.62110 6.66995 6.85252 7.09445 7.23916 7.34233 7.49459 7.66847 8.15897 8.20601 8.68524 9.10386 9.33487 10.80082 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.003947 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.656304 B = 7091.895912 C = 7838.497142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.510 3.490 4 O -0.545 6.545 5 N -0.723 5.723 6 C 0.216 3.784 7 C -0.069 4.069 8 C -0.020 4.020 9 N -0.248 5.248 10 C 0.148 3.852 11 C 0.025 3.975 12 C -0.496 4.496 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.882 5.882 16 Si 0.891 3.109 17 H -0.285 1.285 18 H -0.275 1.275 19 H -0.274 1.274 20 C -0.190 4.190 21 C -0.151 4.151 22 N -0.071 5.071 23 N -0.277 5.277 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.402 0.598 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.182 0.818 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -11.453 1.053 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.296 3.704 4 O -0.422 6.422 5 N -0.375 5.375 6 C 0.091 3.909 7 C -0.208 4.208 8 C -0.175 4.175 9 N -0.038 5.038 10 C 0.028 3.972 11 C 0.024 3.976 12 C -0.533 4.533 13 H 0.077 0.923 14 C -0.129 4.129 15 N -0.518 5.518 16 Si 0.719 3.281 17 H -0.210 1.210 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.227 4.227 21 C -0.189 4.189 22 N -0.051 5.051 23 N -0.144 5.144 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.236 0.764 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.199 0.801 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.385 -10.836 2.140 13.868 hybrid contribution -0.262 0.856 -1.439 1.695 sum -8.647 -9.980 0.702 13.224 Atomic orbital electron populations 1.21521 0.93109 1.01399 1.03384 1.21630 0.98578 0.93914 1.04325 1.20763 0.81955 0.91850 0.75818 1.90705 1.55300 1.46588 1.49653 1.46143 1.07064 1.09058 1.75284 1.19244 0.85415 0.82959 1.03297 1.21594 0.96472 1.12603 0.90108 1.23328 0.84396 1.08245 1.01507 1.47499 1.08004 1.42172 1.06146 1.22030 0.81393 0.99422 0.94350 1.18893 0.88712 0.93216 0.96791 1.20353 1.38081 0.98404 0.96497 0.92297 1.24970 0.94180 0.97921 0.95831 1.69912 1.44581 1.37988 0.99323 0.86651 0.79493 0.84794 0.77198 1.21050 1.20062 1.19982 1.22932 1.07817 1.00504 0.91472 1.22625 0.97274 1.00740 0.98255 1.78245 1.14675 1.18594 0.93602 1.75003 0.95907 1.17486 1.26002 0.92239 0.91987 0.91989 0.88990 0.88952 0.76426 0.89993 0.89962 0.80051 0.87044 0.91077 0.92585 0.90167 0.90913 0.91480 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 2 C -0.14 -1.17 6.42 -27.88 -0.18 -1.35 16 3 C 0.51 6.18 7.83 -10.99 -0.09 6.10 16 4 O -0.55 -8.77 15.98 5.55 0.09 -8.68 16 5 N -0.72 -8.48 5.55 -61.47 -0.34 -8.83 16 6 C 0.22 3.03 6.23 -5.20 -0.03 3.00 16 7 C -0.07 -1.14 6.61 -82.78 -0.55 -1.68 16 8 C -0.02 -0.34 11.50 -17.05 -0.20 -0.54 16 9 N -0.25 -4.76 3.33 -61.26 -0.20 -4.97 16 10 C 0.15 2.89 6.28 -4.04 -0.03 2.87 16 11 C 0.03 0.56 1.31 -155.66 -0.20 0.36 16 12 C -0.50 -12.68 8.71 -34.44 -0.30 -12.98 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.90 5.42 -17.82 -0.10 1.80 16 15 N -0.88 -22.50 13.10 55.43 0.73 -21.77 16 16 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 17 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.19 -3.94 9.86 -26.73 -0.26 -4.20 16 21 C -0.15 -3.17 9.67 -26.73 -0.26 -3.43 16 22 N -0.07 -1.46 12.87 60.35 0.78 -0.69 16 23 N -0.28 -5.41 12.41 33.29 0.41 -5.00 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.40 4.00 8.46 -40.82 -0.35 3.66 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.18 2.53 8.06 -52.48 -0.42 2.11 16 33 H 0.11 2.22 8.07 -51.93 -0.42 1.80 16 34 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.26 6.53 8.32 -40.82 -0.34 6.19 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -29.66 341.46 -6.06 -35.72 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.80 Total: 4.68 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.85 Total: -10.87 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 1.37 Total: -41.25 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.66 -6.06 -35.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594652089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.816 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds