Wall clock time and date at job start Tue Mar 31 2020 01:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47152 * 2 1 4 4 O 1.21284 * 119.99769 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00357 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00264 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47001 * 180.02562 * 6 5 3 8 8 C 1.35348 * 126.75758 * 95.00030 * 7 6 5 9 9 N 1.35308 * 106.17926 * 179.97438 * 8 7 6 10 10 C 1.46500 * 125.86894 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47221 * 123.94660 * 10 9 8 12 12 C 1.50698 * 115.55023 * 295.27239 * 11 10 9 13 13 H 1.08000 * 120.00646 * 99.43029 * 12 11 10 14 14 C 1.37880 * 119.99592 * 279.42932 * 12 11 10 15 15 N 1.31516 * 120.00296 * 5.61487 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 185.62000 * 14 12 11 17 17 H 1.48505 * 109.46973 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47082 * 299.99613 * 16 14 12 19 19 H 1.48502 * 109.46939 * 59.99866 * 16 14 12 20 20 C 1.52999 * 117.51854 * 80.96646 * 11 10 9 21 21 C 1.53001 * 117.49951 * 149.59683 * 11 10 9 22 22 N 1.28721 * 108.26434 * 0.26294 * 9 8 7 23 23 N 1.28635 * 110.17513 * 359.56179 * 22 9 8 24 24 H 1.08997 * 109.46722 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47333 * 300.00067 * 1 2 3 26 26 H 1.09000 * 109.46821 * 60.00396 * 1 2 3 27 27 H 1.08993 * 109.47730 * 239.99685 * 2 1 3 28 28 H 1.09008 * 109.46964 * 119.99386 * 2 1 3 29 29 H 0.97003 * 119.99637 * 0.02562 * 5 3 2 30 30 H 1.08998 * 109.46910 * 60.00338 * 6 5 3 31 31 H 1.09000 * 109.47172 * 300.00053 * 6 5 3 32 32 H 1.08005 * 126.90772 * 359.97438 * 8 7 6 33 33 H 1.08996 * 109.47226 * 3.94839 * 10 9 8 34 34 H 1.09001 * 109.47006 * 243.94736 * 10 9 8 35 35 H 0.96998 * 120.00163 * 175.32739 * 15 14 12 36 36 H 1.08997 * 117.50526 * 214.97111 * 20 11 10 37 37 H 1.09005 * 117.50022 * 359.97438 * 20 11 10 38 38 H 1.09002 * 117.50086 * 359.97367 * 21 11 10 39 39 H 1.08999 * 117.49634 * 145.00508 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3527 3.0484 0.0001 8 6 6.1628 3.1424 -1.0801 9 7 7.4295 3.1017 -0.6062 10 6 8.6504 3.1727 -1.4127 11 6 9.5200 4.3314 -0.9207 12 6 8.9290 5.7067 -1.0940 13 1 8.4533 6.1993 -0.2588 14 6 8.9956 6.3363 -2.3188 15 7 9.4747 5.6954 -3.3625 16 14 8.4054 8.0998 -2.4959 17 1 8.5831 8.5424 -3.9022 18 1 6.9688 8.1802 -2.1289 19 1 9.1959 8.9789 -1.5971 20 6 10.3910 4.0872 0.3132 21 6 11.0361 4.1899 -1.0703 22 7 7.3774 2.9849 0.6746 23 7 6.1530 2.9559 1.0681 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.9878 0.9299 0.0005 30 1 3.4820 3.5627 0.8895 31 1 3.4828 3.5617 -0.8905 32 1 5.8591 3.2319 -2.1128 33 1 8.3867 3.3347 -2.4578 34 1 9.2031 2.2380 -1.3182 35 1 9.4591 6.1135 -4.2376 36 1 10.5366 4.9212 0.9997 37 1 10.3443 3.1009 0.7751 38 1 11.4141 3.2712 -1.5189 39 1 11.6060 5.0917 -1.2941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594652089.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:07 Heat of formation + Delta-G solvation = 53.150570 kcal Electronic energy + Delta-G solvation = -21158.993377 eV Core-core repulsion = 17910.546657 eV Total energy + Delta-G solvation = -3248.446720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.10564 -40.63968 -38.71209 -36.28140 -34.65394 -34.07673 -33.69068 -32.16787 -28.92920 -27.89541 -27.43161 -24.75873 -23.19796 -22.88015 -22.34508 -21.30908 -21.01384 -18.67938 -18.02708 -17.62750 -17.10769 -16.71388 -16.69589 -16.60488 -15.82438 -15.50026 -15.09025 -14.87470 -14.67869 -14.24989 -13.78366 -13.60400 -13.38611 -13.10048 -13.05007 -12.90589 -12.59163 -12.51440 -12.45027 -12.09555 -11.97546 -11.86787 -11.73788 -11.10463 -10.96243 -10.77431 -10.48703 -10.18442 -10.10539 -10.06900 -8.21737 -6.32412 0.80151 1.35446 1.39323 1.40220 1.44765 1.66836 1.69639 2.35629 2.48762 3.06469 3.35780 3.46829 3.81846 3.87198 4.08382 4.13506 4.15354 4.28303 4.32723 4.44656 4.52635 4.56500 4.63911 4.77198 4.82358 4.99762 5.04216 5.09950 5.12184 5.15815 5.25363 5.33029 5.41330 5.45076 5.58633 5.66647 5.84789 6.29883 6.57882 6.69745 7.27771 7.37121 7.65843 8.85047 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.003947 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.656304 B = 7091.895912 C = 7838.497142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.506 3.494 4 O -0.590 6.590 5 N -0.715 5.715 6 C 0.222 3.778 7 C -0.059 4.059 8 C -0.020 4.020 9 N -0.254 5.254 10 C 0.157 3.843 11 C 0.005 3.995 12 C -0.512 4.512 13 H 0.030 0.970 14 C 0.046 3.954 15 N -0.892 5.892 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.281 1.281 20 C -0.180 4.180 21 C -0.144 4.144 22 N -0.101 5.101 23 N -0.297 5.297 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.413 0.587 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.210 0.790 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.266 0.734 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -13.141 0.277 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.295 3.705 4 O -0.471 6.471 5 N -0.367 5.367 6 C 0.096 3.904 7 C -0.199 4.199 8 C -0.174 4.174 9 N -0.045 5.045 10 C 0.037 3.963 11 C 0.003 3.997 12 C -0.549 4.549 13 H 0.048 0.952 14 C -0.156 4.156 15 N -0.528 5.528 16 Si 0.761 3.239 17 H -0.201 1.201 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.217 4.217 21 C -0.182 4.182 22 N -0.080 5.080 23 N -0.163 5.163 24 H 0.104 0.896 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.249 0.751 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.227 0.773 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.755 -12.551 1.373 15.364 hybrid contribution -0.171 1.403 -1.162 1.829 sum -8.926 -11.148 0.211 14.283 Atomic orbital electron populations 1.21539 0.93441 1.02618 1.01884 1.21696 0.98153 0.91106 1.06641 1.21555 0.81372 0.93203 0.74398 1.90690 1.56293 1.48345 1.51727 1.46041 1.07422 1.08354 1.74900 1.19127 0.83786 0.84444 1.03045 1.21888 0.97303 1.11380 0.89323 1.23848 0.83543 1.07164 1.02874 1.47501 1.08604 1.42439 1.05950 1.21856 0.81353 0.99293 0.93808 1.18959 0.89588 0.92916 0.98202 1.20394 1.38494 1.00254 0.95769 0.95174 1.25368 0.94459 1.00083 0.95707 1.69940 1.44856 1.38659 0.99379 0.85989 0.78637 0.81985 0.77278 1.20082 1.20477 1.20664 1.22874 1.06944 1.00856 0.91039 1.22576 0.96278 1.00918 0.98463 1.78214 1.15252 1.20233 0.94321 1.74962 0.96148 1.18066 1.27148 0.89583 0.93657 0.93407 0.86288 0.86721 0.75123 0.91343 0.89223 0.77305 0.87452 0.88572 0.92418 0.91575 0.89121 0.88971 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.20 71.98 0.66 -1.38 16 2 C -0.14 -1.82 6.42 29.85 0.19 -1.63 16 3 C 0.51 11.53 7.83 87.66 0.69 12.22 16 4 O -0.59 -18.82 15.98 -3.04 -0.05 -18.87 16 5 N -0.71 -15.55 5.55 -466.80 -2.59 -18.14 16 6 C 0.22 6.01 6.23 85.63 0.53 6.55 16 7 C -0.06 -1.90 6.61 41.59 0.28 -1.62 16 8 C -0.02 -0.65 11.50 83.49 0.96 0.31 16 9 N -0.25 -9.46 3.33 -347.74 -1.16 -10.61 16 10 C 0.16 5.88 6.28 86.38 0.54 6.42 16 11 C 0.00 0.20 1.31 -52.93 -0.07 0.13 16 12 C -0.51 -26.28 8.71 25.60 0.22 -26.06 16 13 H 0.03 1.68 7.82 -2.91 -0.02 1.66 16 14 C 0.05 2.34 5.42 84.66 0.46 2.79 16 15 N -0.89 -44.69 13.10 21.45 0.28 -44.41 16 16 Si 0.93 41.41 29.54 68.60 2.03 43.44 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 C -0.18 -7.32 9.86 30.59 0.30 -7.02 16 21 C -0.14 -5.92 9.67 30.60 0.30 -5.62 16 22 N -0.10 -4.08 12.87 37.02 0.48 -3.60 16 23 N -0.30 -11.41 12.41 -48.60 -0.60 -12.02 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 26 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 27 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.41 7.26 8.46 -92.71 -0.78 6.47 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.21 5.32 8.06 -2.91 -0.02 5.30 16 33 H 0.11 4.10 8.07 -2.39 -0.02 4.08 16 34 H 0.10 3.08 8.10 -2.39 -0.02 3.06 16 35 H 0.27 12.86 8.32 -92.71 -0.77 12.09 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.09 3.35 8.14 -2.38 -0.02 3.33 16 38 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -63.81 341.46 3.71 -60.10 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.27 Total: 19.03 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 5.06 Total: -14.92 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -3.59 Total: -88.78 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -63.81 3.71 -60.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594652089.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.247 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds