Wall clock time and date at job start Tue Mar 31 2020 00:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47084 * 2 1 4 4 C 1.50703 * 109.47283 * 174.59604 * 3 2 1 5 5 N 1.30868 * 126.18608 * 233.64187 * 4 3 2 6 6 C 1.34556 * 107.26280 * 180.23440 * 5 4 3 7 7 C 1.47875 * 126.04304 * 179.78775 * 6 5 4 8 8 N 1.34774 * 120.00076 * 359.95430 * 7 6 5 9 9 O 1.21559 * 119.99573 * 179.97438 * 7 6 5 10 10 N 1.31491 * 107.90577 * 359.75141 * 6 5 4 11 11 N 1.28852 * 108.70187 * 359.97438 * 10 6 5 12 12 C 1.46502 * 125.75046 * 179.97438 * 11 10 6 13 13 C 1.53005 * 109.46846 * 96.76358 * 12 11 10 14 14 C 1.50703 * 115.55744 * 160.17208 * 13 12 11 15 15 H 1.07996 * 119.99789 * 144.88448 * 14 13 12 16 16 C 1.37875 * 120.00117 * 324.87767 * 14 13 12 17 17 N 1.31518 * 120.00237 * 183.50071 * 16 14 13 18 18 Si 1.86806 * 119.99878 * 3.50092 * 16 14 13 19 19 H 1.48493 * 109.47261 * 90.89284 * 18 16 14 20 20 H 1.48506 * 109.46937 * 210.89284 * 18 16 14 21 21 H 1.48495 * 109.47048 * 330.88725 * 18 16 14 22 22 C 1.52997 * 117.49656 * 305.85732 * 13 12 11 23 23 C 1.52994 * 117.49851 * 14.47830 * 13 12 11 24 24 H 1.09000 * 109.47466 * 300.00337 * 1 2 3 25 25 H 1.08999 * 109.47382 * 60.00036 * 1 2 3 26 26 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47099 * 239.99838 * 2 1 3 28 28 H 1.08995 * 109.46964 * 119.99696 * 2 1 3 29 29 H 1.09001 * 109.47505 * 54.59632 * 3 2 1 30 30 H 1.09000 * 109.47218 * 294.59925 * 3 2 1 31 31 H 0.96999 * 120.00199 * 0.02562 * 8 7 6 32 32 H 0.97004 * 119.99687 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.46911 * 336.76506 * 12 11 10 34 34 H 1.08995 * 109.47078 * 216.76165 * 12 11 10 35 35 H 0.96998 * 120.00333 * 180.02562 * 17 16 14 36 36 H 1.08996 * 117.50380 * 0.02562 * 22 13 12 37 37 H 1.09001 * 117.49453 * 214.98336 * 22 13 12 38 38 H 1.09002 * 117.49728 * 145.01920 * 23 13 12 39 39 H 1.08998 * 117.50381 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5411 1.4446 0.1338 5 7 4.2360 2.0983 1.0296 6 6 5.5349 1.8347 0.7976 7 6 6.6813 2.3659 1.5660 8 7 6.4687 3.1966 2.6058 9 8 7.8154 2.0535 1.2596 10 7 5.6045 1.0206 -0.2326 11 7 4.4090 0.7715 -0.6438 12 6 4.0548 -0.0929 -1.7723 13 6 3.6973 -1.4874 -1.2540 14 6 2.8818 -2.3402 -2.1915 15 1 3.0419 -3.4076 -2.2278 16 6 1.9313 -1.7577 -3.0028 17 7 1.1723 -2.5088 -3.7705 18 14 1.7216 0.0986 -3.0116 19 1 2.5919 0.6901 -4.0593 20 1 0.3038 0.4351 -3.2978 21 1 2.1021 0.6460 -1.6847 22 6 4.7227 -2.1954 -0.3663 23 6 3.4361 -1.6380 0.2459 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5998 1.9835 0.8376 30 1 1.7578 1.9276 -0.9344 31 1 5.5637 3.4458 2.8503 32 1 7.2207 3.5448 3.1100 33 1 4.9018 -0.1650 -2.4546 34 1 3.1990 0.3294 -2.2988 35 1 0.5038 -2.0990 -4.3415 36 1 5.6518 -1.6676 -0.1511 37 1 4.8074 -3.2780 -0.4603 38 1 2.6744 -2.3539 0.5548 39 1 3.5185 -0.7436 0.8635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596281968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:14 Heat of formation + Delta-G solvation = 162.696132 kcal Electronic energy + Delta-G solvation = -23222.485841 eV Core-core repulsion = 19978.789373 eV Total energy + Delta-G solvation = -3243.696468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.43364 -39.21285 -38.16908 -35.20200 -33.97946 -33.14162 -32.51109 -31.28397 -28.44699 -27.05180 -25.81558 -23.82760 -23.03459 -21.40925 -20.56809 -19.78300 -19.43246 -18.20969 -17.36245 -17.20872 -16.56003 -15.85566 -15.75093 -14.74825 -14.52830 -14.32549 -13.94317 -13.64609 -13.39618 -13.10457 -12.92142 -12.42278 -12.23244 -11.82927 -11.37948 -11.09782 -10.91297 -10.73065 -10.60904 -10.38417 -10.29711 -10.24659 -10.12962 -9.77133 -9.76780 -9.40786 -9.30146 -9.03022 -8.78315 -8.13406 -6.43864 -4.42816 1.64561 2.23100 2.47890 2.72218 2.92989 3.11091 3.39291 3.52365 3.99109 4.15939 4.38123 4.77496 4.79419 5.05539 5.13781 5.26409 5.39314 5.44089 5.62623 5.65284 5.76008 5.89922 5.94552 6.05480 6.13482 6.24249 6.37283 6.43315 6.45310 6.53264 6.64259 6.65412 6.69101 6.80486 6.86642 6.98128 7.23476 7.36473 8.13957 8.18149 8.40345 8.60011 9.11705 10.67024 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.006998 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.330698 B = 4000.386259 C = 4407.834503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.169 4.169 3 C -0.039 4.039 4 C 0.226 3.774 5 N -0.493 5.493 6 C 0.113 3.887 7 C 0.629 3.371 8 N -0.836 5.836 9 O -0.527 6.527 10 N -0.243 5.243 11 N -0.271 5.271 12 C 0.112 3.888 13 C -0.004 4.004 14 C -0.478 4.478 15 H 0.089 0.911 16 C 0.082 3.918 17 N -0.878 5.878 18 Si 0.778 3.222 19 H -0.281 1.281 20 H -0.282 1.282 21 H -0.168 1.168 22 C -0.190 4.190 23 C -0.201 4.201 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.407 0.593 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.271 0.729 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 10.114 9.398 13.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C -0.079 4.079 4 C -0.048 4.048 5 N -0.220 5.220 6 C -0.166 4.166 7 C 0.410 3.590 8 N -0.401 5.401 9 O -0.399 6.399 10 N -0.084 5.084 11 N -0.066 5.066 12 C -0.006 4.006 13 C -0.006 4.006 14 C -0.515 4.515 15 H 0.107 0.893 16 C -0.122 4.122 17 N -0.513 5.513 18 Si 0.610 3.390 19 H -0.210 1.210 20 H -0.209 1.209 21 H -0.095 1.095 22 C -0.228 4.228 23 C -0.238 4.238 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.241 0.759 32 H 0.239 0.761 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.073 9.746 8.889 13.234 hybrid contribution -0.505 1.028 -0.159 1.156 sum 0.568 10.773 8.730 13.878 Atomic orbital electron populations 1.21734 0.95467 1.02474 1.00946 1.23032 0.96434 0.94362 1.06799 1.20448 0.83406 1.00311 1.03700 1.24657 0.96625 0.93474 0.90085 1.71122 1.01668 1.25010 1.24232 1.23395 0.92120 1.02736 0.98301 1.16253 0.85411 0.77965 0.79376 1.43419 1.13279 1.50144 1.33292 1.90857 1.22276 1.58825 1.67953 1.74305 1.05296 1.15702 1.13070 1.47510 1.02479 1.32132 1.24429 1.23224 1.02859 0.89802 0.84705 1.19610 0.99776 0.90445 0.90744 1.20297 1.16712 0.94893 1.19643 0.89323 1.25016 0.94990 0.97427 0.94814 1.69798 1.21005 1.35406 1.25135 0.89545 0.78312 0.88671 0.82422 1.20977 1.20918 1.09499 1.23035 0.93089 1.00023 1.06630 1.23615 0.99409 1.01845 0.98970 0.93116 0.93148 0.91723 0.86521 0.89542 0.88338 0.89172 0.75943 0.76118 0.87444 0.88224 0.91873 0.90475 0.89430 0.88866 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.42 37.16 0.35 -1.77 16 2 C -0.17 -2.71 2.83 -26.73 -0.08 -2.78 16 3 C -0.04 -0.58 4.85 -27.88 -0.14 -0.71 16 4 C 0.23 3.89 5.80 -155.52 -0.90 2.99 16 5 N -0.49 -8.29 11.09 -8.54 -0.09 -8.39 16 6 C 0.11 2.05 7.96 -156.36 -1.24 0.81 16 7 C 0.63 10.25 8.10 -12.32 -0.10 10.15 16 8 N -0.84 -8.99 8.87 30.54 0.27 -8.72 16 9 O -0.53 -10.27 17.92 5.31 0.10 -10.18 16 10 N -0.24 -4.87 11.83 32.07 0.38 -4.49 16 11 N -0.27 -5.15 2.40 -58.29 -0.14 -5.29 16 12 C 0.11 2.22 4.98 -4.04 -0.02 2.20 16 13 C 0.00 -0.08 1.33 -155.66 -0.21 -0.28 16 14 C -0.48 -11.82 9.41 -34.44 -0.32 -12.14 16 15 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 16 C 0.08 2.05 5.34 -17.82 -0.10 1.95 16 17 N -0.88 -23.98 13.96 55.43 0.77 -23.21 16 18 Si 0.78 16.15 20.24 -169.99 -3.44 12.71 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 21 H -0.17 -2.98 0.28 56.52 0.02 -2.96 16 22 C -0.19 -3.86 9.78 -26.73 -0.26 -4.12 16 23 C -0.20 -3.88 5.78 -26.74 -0.15 -4.04 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.72 7.14 -51.93 -0.37 0.35 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.12 2.17 0.92 -51.93 -0.05 2.12 16 28 H 0.09 1.39 5.12 -51.93 -0.27 1.13 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.26 6.22 -51.93 -0.32 0.94 16 31 H 0.41 3.75 8.54 -40.82 -0.35 3.40 16 32 H 0.41 3.30 8.93 -40.82 -0.36 2.94 16 33 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 34 H 0.10 1.97 0.79 -51.93 -0.04 1.93 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.08 1.58 7.89 -51.93 -0.41 1.17 16 37 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.09 1.80 7.99 -51.93 -0.41 1.39 16 39 H 0.07 1.37 4.40 -51.93 -0.23 1.14 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -29.64 291.39 -5.81 -35.45 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -4.87 Total: 15.47 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.17 Total: -7.74 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 1.19 Total: -50.10 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.10 Total: -10.18 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -3.44 Total: 12.71 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.64 -5.81 -35.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596281968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.142 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds