Wall clock time and date at job start Tue Mar 31 2020 00:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47084 * 2 1 4 4 C 1.50703 * 109.47283 * 174.59604 * 3 2 1 5 5 N 1.30868 * 126.18608 * 233.64187 * 4 3 2 6 6 C 1.34556 * 107.26280 * 180.23440 * 5 4 3 7 7 C 1.47875 * 126.04304 * 179.78775 * 6 5 4 8 8 N 1.34774 * 120.00076 * 359.95430 * 7 6 5 9 9 O 1.21559 * 119.99573 * 179.97438 * 7 6 5 10 10 N 1.31491 * 107.90577 * 359.75141 * 6 5 4 11 11 N 1.28852 * 108.70187 * 359.97438 * 10 6 5 12 12 C 1.46502 * 125.75046 * 179.97438 * 11 10 6 13 13 C 1.53005 * 109.46846 * 96.76358 * 12 11 10 14 14 C 1.50703 * 115.55744 * 160.17208 * 13 12 11 15 15 H 1.07996 * 119.99789 * 144.88448 * 14 13 12 16 16 C 1.37875 * 120.00117 * 324.87767 * 14 13 12 17 17 N 1.31518 * 120.00237 * 183.50071 * 16 14 13 18 18 Si 1.86806 * 119.99878 * 3.50092 * 16 14 13 19 19 H 1.48493 * 109.47261 * 90.89284 * 18 16 14 20 20 H 1.48506 * 109.46937 * 210.89284 * 18 16 14 21 21 H 1.48495 * 109.47048 * 330.88725 * 18 16 14 22 22 C 1.52997 * 117.49656 * 305.85732 * 13 12 11 23 23 C 1.52994 * 117.49851 * 14.47830 * 13 12 11 24 24 H 1.09000 * 109.47466 * 300.00337 * 1 2 3 25 25 H 1.08999 * 109.47382 * 60.00036 * 1 2 3 26 26 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47099 * 239.99838 * 2 1 3 28 28 H 1.08995 * 109.46964 * 119.99696 * 2 1 3 29 29 H 1.09001 * 109.47505 * 54.59632 * 3 2 1 30 30 H 1.09000 * 109.47218 * 294.59925 * 3 2 1 31 31 H 0.96999 * 120.00199 * 0.02562 * 8 7 6 32 32 H 0.97004 * 119.99687 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.46911 * 336.76506 * 12 11 10 34 34 H 1.08995 * 109.47078 * 216.76165 * 12 11 10 35 35 H 0.96998 * 120.00333 * 180.02562 * 17 16 14 36 36 H 1.08996 * 117.50380 * 0.02562 * 22 13 12 37 37 H 1.09001 * 117.49453 * 214.98336 * 22 13 12 38 38 H 1.09002 * 117.49728 * 145.01920 * 23 13 12 39 39 H 1.08998 * 117.50381 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5411 1.4446 0.1338 5 7 4.2360 2.0983 1.0296 6 6 5.5349 1.8347 0.7976 7 6 6.6813 2.3659 1.5660 8 7 6.4687 3.1966 2.6058 9 8 7.8154 2.0535 1.2596 10 7 5.6045 1.0206 -0.2326 11 7 4.4090 0.7715 -0.6438 12 6 4.0548 -0.0929 -1.7723 13 6 3.6973 -1.4874 -1.2540 14 6 2.8818 -2.3402 -2.1915 15 1 3.0419 -3.4076 -2.2278 16 6 1.9313 -1.7577 -3.0028 17 7 1.1723 -2.5088 -3.7705 18 14 1.7216 0.0986 -3.0116 19 1 2.5919 0.6901 -4.0593 20 1 0.3038 0.4351 -3.2978 21 1 2.1021 0.6460 -1.6847 22 6 4.7227 -2.1954 -0.3663 23 6 3.4361 -1.6380 0.2459 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5998 1.9835 0.8376 30 1 1.7578 1.9276 -0.9344 31 1 5.5637 3.4458 2.8503 32 1 7.2207 3.5448 3.1100 33 1 4.9018 -0.1650 -2.4546 34 1 3.1990 0.3294 -2.2988 35 1 0.5038 -2.0990 -4.3415 36 1 5.6518 -1.6676 -0.1511 37 1 4.8074 -3.2780 -0.4603 38 1 2.6744 -2.3539 0.5548 39 1 3.5185 -0.7436 0.8635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596281968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:12 Heat of formation + Delta-G solvation = 139.638235 kcal Electronic energy + Delta-G solvation = -23223.485707 eV Core-core repulsion = 19978.789373 eV Total energy + Delta-G solvation = -3244.696333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -44.83740 -40.52624 -39.69592 -36.51637 -35.30121 -34.52977 -34.31380 -32.62986 -30.01549 -28.28451 -27.57608 -25.25239 -24.46009 -22.79565 -21.95333 -21.29480 -20.97162 -19.56605 -18.92895 -18.56893 -17.86059 -17.27510 -17.23060 -16.14534 -16.00211 -15.72164 -15.28718 -15.15331 -14.96346 -14.68864 -14.29604 -14.01445 -13.50811 -13.06022 -12.84156 -12.59141 -12.48535 -12.35445 -12.14330 -11.88064 -11.70629 -11.63596 -11.50723 -11.37362 -11.08350 -10.96358 -10.83215 -10.59864 -10.40581 -9.70486 -8.38573 -6.43916 0.27515 0.90319 0.99189 1.08684 1.23822 1.40959 2.18028 2.21206 2.22439 2.67366 2.90778 3.15989 3.40926 3.56200 3.74825 3.79003 4.03457 4.05834 4.19889 4.25990 4.45530 4.47381 4.63535 4.72272 4.78758 4.81869 4.87315 4.96489 5.04662 5.20703 5.29013 5.32260 5.35999 5.43227 5.54328 5.56992 5.74781 6.19318 6.21200 6.56795 6.94580 7.15664 7.17163 8.75103 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.006998 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.330698 B = 4000.386259 C = 4407.834503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.174 4.174 3 C -0.044 4.044 4 C 0.226 3.774 5 N -0.477 5.477 6 C 0.113 3.887 7 C 0.626 3.374 8 N -0.802 5.802 9 O -0.566 6.566 10 N -0.278 5.278 11 N -0.281 5.281 12 C 0.119 3.881 13 C -0.011 4.011 14 C -0.483 4.483 15 H 0.044 0.956 16 C 0.035 3.965 17 N -0.931 5.931 18 Si 0.818 3.182 19 H -0.290 1.290 20 H -0.284 1.284 21 H -0.108 1.108 22 C -0.193 4.193 23 C -0.171 4.171 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.423 0.577 32 H 0.424 0.576 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 13.222 11.923 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.211 4.211 3 C -0.082 4.082 4 C -0.049 4.049 5 N -0.204 5.204 6 C -0.167 4.167 7 C 0.406 3.594 8 N -0.368 5.368 9 O -0.442 6.442 10 N -0.118 5.118 11 N -0.075 5.075 12 C 0.000 4.000 13 C -0.012 4.012 14 C -0.521 4.521 15 H 0.062 0.938 16 C -0.165 4.165 17 N -0.568 5.568 18 Si 0.650 3.350 19 H -0.219 1.219 20 H -0.211 1.211 21 H -0.035 1.035 22 C -0.230 4.230 23 C -0.209 4.209 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.122 0.878 31 H 0.255 0.745 32 H 0.258 0.742 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.510 12.877 11.475 17.255 hybrid contribution -0.299 -0.015 -0.857 0.908 sum 0.211 12.862 10.618 16.679 Atomic orbital electron populations 1.21724 0.93889 1.02199 1.02636 1.22940 0.97913 0.95033 1.05216 1.20665 0.81638 0.99759 1.06157 1.25282 0.97562 0.92638 0.89392 1.71172 1.00875 1.24616 1.23747 1.23856 0.93145 1.01932 0.97753 1.16268 0.84328 0.78591 0.80208 1.43181 1.14775 1.47700 1.31147 1.90846 1.23420 1.60617 1.69335 1.74289 1.06015 1.17125 1.14361 1.47335 1.02765 1.32746 1.24649 1.22936 1.02817 0.89246 0.85023 1.19372 0.99932 0.91031 0.90912 1.20284 1.17531 0.93504 1.20742 0.93782 1.25753 0.94259 1.02508 0.94002 1.69963 1.22287 1.37857 1.26693 0.89039 0.77957 0.83002 0.85038 1.21934 1.21096 1.03477 1.23027 0.93492 0.99796 1.06705 1.23493 0.98330 1.01857 0.97219 0.89695 0.93183 0.93121 0.89700 0.89420 0.84414 0.87757 0.74480 0.74191 0.87746 0.88061 0.92035 0.90453 0.89900 0.88874 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.42 71.98 0.68 -2.99 16 2 C -0.17 -4.94 2.83 30.59 0.09 -4.86 16 3 C -0.04 -1.06 4.85 29.85 0.14 -0.91 16 4 C 0.23 6.89 5.80 138.17 0.80 7.69 16 5 N -0.48 -14.09 11.09 -180.94 -2.01 -16.10 16 6 C 0.11 3.78 7.96 137.13 1.09 4.87 16 7 C 0.63 18.81 8.10 86.80 0.70 19.52 16 8 N -0.80 -14.35 8.87 -175.58 -1.56 -15.90 16 9 O -0.57 -21.30 17.92 -3.90 -0.07 -21.37 16 10 N -0.28 -10.62 11.83 -52.44 -0.62 -11.25 16 11 N -0.28 -10.03 2.40 -338.34 -0.81 -10.84 16 12 C 0.12 4.57 4.98 86.38 0.43 5.00 16 13 C -0.01 -0.44 1.33 -52.93 -0.07 -0.51 16 14 C -0.48 -24.79 9.41 25.60 0.24 -24.55 16 15 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 16 C 0.03 1.78 5.34 84.65 0.45 2.24 16 17 N -0.93 -53.07 13.96 21.45 0.30 -52.77 16 18 Si 0.82 32.97 20.24 68.60 1.39 34.35 16 19 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.11 -3.53 0.28 99.48 0.03 -3.50 16 22 C -0.19 -7.79 9.78 30.59 0.30 -7.49 16 23 C -0.17 -6.40 5.78 30.59 0.18 -6.22 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.25 7.14 -2.39 -0.02 1.24 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 2.98 0.92 -2.39 0.00 2.98 16 28 H 0.09 2.50 5.12 -2.39 -0.01 2.48 16 29 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.10 2.34 6.22 -2.39 -0.01 2.32 16 31 H 0.42 5.87 8.54 -92.71 -0.79 5.07 16 32 H 0.42 5.33 8.93 -92.71 -0.83 4.50 16 33 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 34 H 0.10 3.85 0.79 -2.39 0.00 3.84 16 35 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.08 3.14 7.89 -2.39 -0.02 3.12 16 37 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.09 3.49 7.99 -2.39 -0.02 3.48 16 39 H 0.09 3.00 4.40 -2.39 -0.01 2.99 16 Total: -1.00 -67.20 291.39 0.49 -66.71 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -1.17 Total: 35.38 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.03 Total: -8.22 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.70 Total: -106.85 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.07 Total: -21.37 kcal Atomic # 14 Polarization: 32.97 SS G_CDS: 1.39 Total: 34.35 kcal Total: -67.20 0.49 -66.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596281968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.353 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds