Wall clock time and date at job start Tue Mar 31 2020 00:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30839 * 125.96138 * 2 1 4 4 C 1.33241 * 109.82591 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52319 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47310 * 89.99740 * 5 4 3 7 7 O 1.21281 * 119.99837 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00021 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99786 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46992 * 90.00095 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.46504 * 119.99832 * 0.02562 * 8 6 5 19 19 C 1.53002 * 109.46810 * 269.99624 * 18 8 6 20 20 C 1.53002 * 117.49875 * 243.62335 * 19 18 8 21 21 C 1.52999 * 117.49621 * 175.00094 * 19 18 8 22 22 N 1.30709 * 108.94933 * 0.25811 * 4 3 2 23 23 N 1.34431 * 125.96137 * 180.02562 * 2 1 3 24 24 H 0.96996 * 126.82281 * 359.97411 * 23 2 1 25 25 H 1.09007 * 109.47113 * 89.97729 * 1 2 3 26 26 H 1.08993 * 109.47357 * 209.97741 * 1 2 3 27 27 H 1.09005 * 109.47385 * 329.97980 * 1 2 3 28 28 H 1.09000 * 109.47002 * 329.99810 * 5 4 3 29 29 H 1.08999 * 109.47419 * 209.99538 * 5 4 3 30 30 H 1.09002 * 109.47391 * 330.00086 * 9 8 6 31 31 H 1.09001 * 109.46813 * 210.00142 * 9 8 6 32 32 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 33 33 H 1.08992 * 109.47334 * 29.99480 * 18 8 6 34 34 H 1.08994 * 109.46680 * 150.00103 * 18 8 6 35 35 H 1.09004 * 115.54776 * 29.33368 * 19 18 8 36 36 H 1.09001 * 117.49844 * 0.02562 * 20 19 18 37 37 H 1.09006 * 117.49553 * 145.02358 * 20 19 18 38 38 H 1.09003 * 117.49630 * 214.97900 * 21 19 18 39 39 H 1.08991 * 117.50023 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7372 1.6236 -0.0002 6 6 5.1315 1.9343 1.4208 7 8 4.5139 1.4444 2.3424 8 7 6.1712 2.7558 1.6673 9 6 6.5542 3.0582 3.0486 10 6 7.5663 2.0471 3.5222 11 1 7.8921 1.2584 2.8603 12 6 8.0773 2.1296 4.8002 13 7 8.9609 1.2475 5.2132 14 14 7.5143 3.4943 5.9448 15 1 6.3297 3.0372 6.7149 16 1 8.6126 3.8375 6.8835 17 1 7.1531 4.6929 5.1460 18 6 6.9177 3.3470 0.5540 19 6 8.0720 2.4212 0.1651 20 6 9.4954 2.9532 0.3441 21 6 8.9044 2.8060 -1.0596 22 7 3.6194 -0.6168 -0.0065 23 7 2.2964 -1.0881 -0.0005 24 1 2.0093 -2.0146 -0.0006 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8901 0.5134 27 1 -0.3634 0.8898 0.5142 28 1 4.4699 2.5474 -0.5134 29 1 5.5742 1.1513 -0.5145 30 1 5.6722 3.0162 3.6878 31 1 6.9890 4.0567 3.0948 32 1 9.3201 1.3053 6.1124 33 1 6.2533 3.4778 -0.3001 34 1 7.3151 4.3157 0.8568 35 1 7.9046 1.3594 0.3466 36 1 9.6094 3.9626 0.7392 37 1 10.2648 2.2414 0.6434 38 1 9.2851 1.9974 -1.6836 39 1 8.6300 3.7189 -1.5880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597141831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:23 Heat of formation + Delta-G solvation = 76.942374 kcal Electronic energy + Delta-G solvation = -21647.811733 eV Core-core repulsion = 18400.396703 eV Total energy + Delta-G solvation = -3247.415030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.77 seconds Orbital eigenvalues (eV) -42.03946 -39.17244 -36.99509 -34.42564 -33.53254 -32.42744 -32.29130 -30.12339 -28.32240 -27.46157 -26.03614 -22.75192 -21.94589 -21.37750 -20.55054 -20.37914 -18.47819 -17.75815 -16.83644 -16.56573 -15.73176 -15.39924 -15.00887 -14.52923 -14.36386 -13.90015 -13.52312 -13.43392 -13.13927 -12.84774 -12.60553 -12.34867 -12.29790 -11.95621 -11.74487 -11.54831 -11.24642 -11.12042 -10.89348 -10.50270 -10.12778 -10.03514 -9.92624 -9.91950 -9.54583 -9.45817 -9.38241 -8.91872 -8.50928 -7.69486 -6.00691 -3.97562 1.67915 2.68810 2.92000 3.33568 3.35769 3.39449 3.41805 3.82074 4.04644 4.27066 4.46124 4.61999 4.77323 5.00198 5.15669 5.17818 5.24872 5.29182 5.33854 5.47970 5.54246 5.59107 5.71761 5.79458 5.87913 5.90671 6.07347 6.34076 6.36356 6.49557 6.51604 6.68675 6.77032 7.00545 7.09986 7.39176 7.68807 8.20071 8.26281 8.55407 8.98429 9.06235 9.60112 11.12825 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.005388 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.127466 B = 5195.036989 C = 6341.986876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.277 3.723 3 N -0.532 5.532 4 C 0.259 3.741 5 C -0.050 4.050 6 C 0.519 3.481 7 O -0.530 6.530 8 N -0.590 5.590 9 C 0.218 3.782 10 C -0.517 4.517 11 H 0.077 0.923 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.873 3.127 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.144 3.856 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.190 4.190 22 N -0.302 5.302 23 N -0.485 5.485 24 H 0.438 0.562 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.344 1.166 -15.361 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.002 4.002 3 N -0.261 5.261 4 C -0.025 4.025 5 C -0.093 4.093 6 C 0.303 3.697 7 O -0.406 6.406 8 N -0.321 5.321 9 C 0.097 3.903 10 C -0.556 4.556 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.700 3.300 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.191 1.191 18 C 0.020 3.980 19 C -0.177 4.177 20 C -0.197 4.197 21 C -0.228 4.228 22 N -0.130 5.130 23 N -0.203 5.203 24 H 0.283 0.717 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.978 0.860 -14.685 18.355 hybrid contribution -0.312 -0.152 0.819 0.890 sum -11.290 0.708 -13.866 17.895 Atomic orbital electron populations 1.20350 0.83873 1.04978 1.04177 1.24316 0.96489 0.82966 0.96394 1.70277 1.01406 1.29519 1.24895 1.23370 0.92566 0.89747 0.96775 1.20035 0.93315 0.98094 0.97858 1.19870 0.80759 0.79383 0.89645 1.90698 1.53421 1.50428 1.46065 1.47832 1.29571 1.46460 1.08242 1.19678 0.96328 0.96427 0.77849 1.21311 1.22234 1.12832 0.99176 0.90510 1.24834 0.94766 0.95830 0.97618 1.69897 1.30012 1.35574 1.18359 0.86909 0.78634 0.83023 0.81454 1.20108 1.21205 1.19102 1.21076 0.92201 0.95707 0.89011 1.22737 0.93083 1.00874 1.00956 1.22861 0.96740 1.02432 0.97649 1.22976 1.05726 1.02821 0.91281 1.78028 0.96299 1.12383 1.26325 1.47921 1.04414 1.09835 1.58124 0.71747 0.89226 0.90024 0.88417 0.86704 0.86813 0.94701 0.95278 0.92761 0.90959 0.90395 0.87596 0.88953 0.88982 0.89334 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 36.00 0.38 -0.15 16 2 C 0.28 3.59 8.24 -155.69 -1.28 2.31 16 3 N -0.53 -8.91 11.19 -8.16 -0.09 -9.00 16 4 C 0.26 4.62 6.63 -156.86 -1.04 3.58 16 5 C -0.05 -0.82 4.88 -29.03 -0.14 -0.97 16 6 C 0.52 11.07 7.67 -10.98 -0.08 10.98 16 7 O -0.53 -13.91 15.61 5.56 0.09 -13.82 16 8 N -0.59 -12.22 2.46 -175.06 -0.43 -12.65 16 9 C 0.22 5.38 4.27 -5.19 -0.02 5.36 16 10 C -0.52 -14.87 9.94 -34.44 -0.34 -15.21 16 11 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 14 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 18 C 0.14 2.26 5.54 -4.04 -0.02 2.24 16 19 C -0.16 -2.50 5.94 -90.62 -0.54 -3.04 16 20 C -0.16 -2.48 10.18 -26.73 -0.27 -2.75 16 21 C -0.19 -2.38 10.25 -26.73 -0.27 -2.65 16 22 N -0.30 -5.34 12.80 32.42 0.41 -4.93 16 23 N -0.48 -6.37 7.45 32.62 0.24 -6.12 16 24 H 0.44 3.86 8.96 -182.34 -1.63 2.23 16 25 H 0.09 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.11 1.51 7.40 -51.93 -0.38 1.12 16 29 H 0.11 1.65 8.03 -51.93 -0.42 1.23 16 30 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 31 H 0.03 0.68 6.95 -51.93 -0.36 0.32 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 34 H 0.08 1.16 7.63 -51.93 -0.40 0.76 16 35 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 36 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -38.62 334.85 -9.21 -47.84 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.85 Total: 1.93 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.74 Total: 1.69 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.91 Total: -59.97 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -38.62 -9.21 -47.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597141831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.781 kcal (2) G-P(sol) polarization free energy of solvation -38.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds