Wall clock time and date at job start Tue Mar 31 2020 00:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30839 * 125.96138 * 2 1 4 4 C 1.33241 * 109.82591 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.52319 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47310 * 89.99740 * 5 4 3 7 7 O 1.21281 * 119.99837 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00021 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99786 * 179.97438 * 8 6 5 10 10 C 1.50701 * 109.46992 * 90.00095 * 9 8 6 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99594 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 90.00257 * 14 12 10 16 16 H 1.48497 * 109.46906 * 209.99430 * 14 12 10 17 17 H 1.48498 * 109.47403 * 329.99876 * 14 12 10 18 18 C 1.46504 * 119.99832 * 0.02562 * 8 6 5 19 19 C 1.53002 * 109.46810 * 269.99624 * 18 8 6 20 20 C 1.53002 * 117.49875 * 243.62335 * 19 18 8 21 21 C 1.52999 * 117.49621 * 175.00094 * 19 18 8 22 22 N 1.30709 * 108.94933 * 0.25811 * 4 3 2 23 23 N 1.34431 * 125.96137 * 180.02562 * 2 1 3 24 24 H 0.96996 * 126.82281 * 359.97411 * 23 2 1 25 25 H 1.09007 * 109.47113 * 89.97729 * 1 2 3 26 26 H 1.08993 * 109.47357 * 209.97741 * 1 2 3 27 27 H 1.09005 * 109.47385 * 329.97980 * 1 2 3 28 28 H 1.09000 * 109.47002 * 329.99810 * 5 4 3 29 29 H 1.08999 * 109.47419 * 209.99538 * 5 4 3 30 30 H 1.09002 * 109.47391 * 330.00086 * 9 8 6 31 31 H 1.09001 * 109.46813 * 210.00142 * 9 8 6 32 32 H 0.97002 * 119.99739 * 180.02562 * 13 12 10 33 33 H 1.08992 * 109.47334 * 29.99480 * 18 8 6 34 34 H 1.08994 * 109.46680 * 150.00103 * 18 8 6 35 35 H 1.09004 * 115.54776 * 29.33368 * 19 18 8 36 36 H 1.09001 * 117.49844 * 0.02562 * 20 19 18 37 37 H 1.09006 * 117.49553 * 145.02358 * 20 19 18 38 38 H 1.09003 * 117.49630 * 214.97900 * 21 19 18 39 39 H 1.08991 * 117.50023 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7372 1.6236 -0.0002 6 6 5.1315 1.9343 1.4208 7 8 4.5139 1.4444 2.3424 8 7 6.1712 2.7558 1.6673 9 6 6.5542 3.0582 3.0486 10 6 7.5663 2.0471 3.5222 11 1 7.8921 1.2584 2.8603 12 6 8.0773 2.1296 4.8002 13 7 8.9609 1.2475 5.2132 14 14 7.5143 3.4943 5.9448 15 1 6.3297 3.0372 6.7149 16 1 8.6126 3.8375 6.8835 17 1 7.1531 4.6929 5.1460 18 6 6.9177 3.3470 0.5540 19 6 8.0720 2.4212 0.1651 20 6 9.4954 2.9532 0.3441 21 6 8.9044 2.8060 -1.0596 22 7 3.6194 -0.6168 -0.0065 23 7 2.2964 -1.0881 -0.0005 24 1 2.0093 -2.0146 -0.0006 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8901 0.5134 27 1 -0.3634 0.8898 0.5142 28 1 4.4699 2.5474 -0.5134 29 1 5.5742 1.1513 -0.5145 30 1 5.6722 3.0162 3.6878 31 1 6.9890 4.0567 3.0948 32 1 9.3201 1.3053 6.1124 33 1 6.2533 3.4778 -0.3001 34 1 7.3151 4.3157 0.8568 35 1 7.9046 1.3594 0.3466 36 1 9.6094 3.9626 0.7392 37 1 10.2648 2.2414 0.6434 38 1 9.2851 1.9974 -1.6836 39 1 8.6300 3.7189 -1.5880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597141831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:21 Heat of formation + Delta-G solvation = 49.073358 kcal Electronic energy + Delta-G solvation = -21649.020224 eV Core-core repulsion = 18400.396703 eV Total energy + Delta-G solvation = -3248.623521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.16459 -40.78722 -38.33529 -36.11060 -34.79376 -34.46625 -33.35444 -31.57292 -29.84793 -28.58600 -27.55706 -24.63486 -23.08470 -22.57780 -21.88064 -21.61664 -19.98927 -19.01089 -18.86972 -18.09260 -17.35261 -16.55206 -16.51312 -16.00748 -15.85095 -15.27958 -14.88750 -14.74211 -14.44498 -14.23900 -13.69513 -13.65200 -13.60168 -13.42280 -13.29958 -12.92287 -12.73723 -12.56559 -12.47720 -12.22702 -11.95990 -11.65494 -11.28059 -11.16450 -11.10685 -10.83278 -10.79665 -10.62972 -10.40532 -9.43838 -8.29116 -6.31650 0.57805 1.31814 1.36172 1.44044 1.64398 1.73844 1.78454 2.32766 2.38556 3.01067 3.05108 3.07623 3.54982 3.66705 3.89037 3.99753 4.11637 4.26847 4.35169 4.39946 4.54678 4.64328 4.72188 4.74032 4.77807 4.89621 4.92740 4.96153 5.05640 5.16994 5.26065 5.32761 5.38439 5.40307 5.50020 5.67515 6.22876 6.29505 6.65320 6.70157 7.06991 7.24952 7.39625 8.87972 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.005388 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.127466 B = 5195.036989 C = 6341.986876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.284 3.716 3 N -0.565 5.565 4 C 0.239 3.761 5 C -0.038 4.038 6 C 0.511 3.489 7 O -0.591 6.591 8 N -0.592 5.592 9 C 0.225 3.775 10 C -0.517 4.517 11 H 0.030 0.970 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.942 3.058 15 H -0.282 1.282 16 H -0.276 1.276 17 H -0.236 1.236 18 C 0.140 3.860 19 C -0.178 4.178 20 C -0.186 4.186 21 C -0.141 4.141 22 N -0.345 5.345 23 N -0.476 5.476 24 H 0.454 0.546 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.014 0.986 31 H 0.052 0.948 32 H 0.265 0.735 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.109 3.258 -17.391 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.007 3.993 3 N -0.296 5.296 4 C -0.044 4.044 5 C -0.080 4.080 6 C 0.299 3.701 7 O -0.471 6.471 8 N -0.322 5.322 9 C 0.103 3.897 10 C -0.556 4.556 11 H 0.049 0.951 12 C -0.188 4.188 13 N -0.589 5.589 14 Si 0.766 3.234 15 H -0.208 1.208 16 H -0.202 1.202 17 H -0.159 1.159 18 C 0.018 3.982 19 C -0.198 4.198 20 C -0.223 4.223 21 C -0.178 4.178 22 N -0.174 5.174 23 N -0.197 5.197 24 H 0.303 0.697 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.116 0.884 28 H 0.171 0.829 29 H 0.148 0.852 30 H 0.032 0.968 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.738 2.953 -16.780 21.273 hybrid contribution 0.214 -0.952 1.399 1.705 sum -12.524 2.001 -15.381 19.936 Atomic orbital electron populations 1.20654 0.79639 1.06332 1.06402 1.25356 0.98446 0.81921 0.93616 1.70267 1.01313 1.31318 1.26686 1.23618 0.93487 0.90005 0.97272 1.20025 0.93724 0.99866 0.94357 1.20752 0.79967 0.78150 0.91258 1.90654 1.55499 1.52630 1.48353 1.47895 1.29823 1.46459 1.08029 1.19357 0.94109 0.96038 0.80184 1.21485 1.22798 1.12553 0.98734 0.95117 1.25794 0.94785 0.98707 0.99530 1.70059 1.31767 1.38025 1.19069 0.85798 0.77885 0.80572 0.79185 1.20760 1.20177 1.15857 1.21468 0.92496 0.95530 0.88726 1.22604 0.93501 0.99078 1.04610 1.22894 0.96059 1.02065 1.01275 1.23072 1.01168 1.04135 0.89468 1.77895 0.99059 1.12838 1.27649 1.47839 1.03157 1.11028 1.57645 0.69733 0.86354 0.87223 0.88424 0.82934 0.85247 0.96784 0.92973 0.92594 0.86398 0.89004 0.91212 0.88375 0.91451 0.88254 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.51 71.23 0.75 -0.05 16 2 C 0.28 6.93 8.24 138.22 1.14 8.07 16 3 N -0.57 -18.42 11.19 -179.73 -2.01 -20.43 16 4 C 0.24 8.49 6.63 138.63 0.92 9.41 16 5 C -0.04 -1.20 4.88 29.10 0.14 -1.06 16 6 C 0.51 22.04 7.67 87.66 0.67 22.71 16 7 O -0.59 -32.14 15.61 -3.03 -0.05 -32.18 16 8 N -0.59 -24.40 2.46 -826.15 -2.03 -26.43 16 9 C 0.23 11.20 4.27 85.63 0.37 11.57 16 10 C -0.52 -30.91 9.94 25.60 0.25 -30.65 16 11 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 12 C 0.01 0.54 5.47 84.66 0.46 1.00 16 13 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 14 Si 0.94 45.70 27.47 68.60 1.88 47.58 16 15 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 18 C 0.14 4.07 5.54 86.38 0.48 4.54 16 19 C -0.18 -5.57 5.94 -10.79 -0.06 -5.63 16 20 C -0.19 -5.72 10.18 30.60 0.31 -5.41 16 21 C -0.14 -3.11 10.25 30.60 0.31 -2.80 16 22 N -0.34 -12.28 12.80 -51.34 -0.66 -12.94 16 23 N -0.48 -12.12 7.45 -50.71 -0.38 -12.50 16 24 H 0.45 7.51 8.96 -213.10 -1.91 5.60 16 25 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 1.17 8.14 -2.38 -0.02 1.16 16 28 H 0.15 3.54 7.40 -2.39 -0.02 3.52 16 29 H 0.13 3.63 8.03 -2.39 -0.02 3.61 16 30 H 0.01 0.76 6.85 -2.39 -0.02 0.75 16 31 H 0.05 2.36 6.95 -2.39 -0.02 2.34 16 32 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 33 H 0.12 2.35 6.44 -2.39 -0.02 2.34 16 34 H 0.09 2.44 7.63 -2.39 -0.02 2.42 16 35 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 36 H 0.10 2.86 8.03 -2.39 -0.02 2.84 16 37 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -91.01 334.85 1.91 -89.10 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -0.90 Total: 17.28 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.74 Total: 11.70 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -4.78 Total: -133.47 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.58 kcal Total: -91.01 1.91 -89.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597141831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.175 kcal (2) G-P(sol) polarization free energy of solvation -91.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds