Wall clock time and date at job start Tue Mar 31 2020 00:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30833 * 125.96004 * 2 1 4 4 C 1.33242 * 109.83073 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.52874 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.46934 * 89.99949 * 5 4 3 7 7 O 1.21293 * 120.00314 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99986 * 179.97438 * 6 5 4 9 9 C 1.37090 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.08000 * 120.00208 * 222.84569 * 9 8 6 11 11 C 1.38958 * 120.00063 * 42.84182 * 9 8 6 12 12 N 1.31406 * 119.99814 * 19.08784 * 11 9 8 13 13 Si 1.86798 * 119.99974 * 199.08890 * 11 9 8 14 14 H 1.48497 * 109.47275 * 60.00042 * 13 11 9 15 15 H 1.48494 * 109.47116 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47174 * 300.00006 * 13 11 9 17 17 C 1.46496 * 119.99605 * 0.02562 * 8 6 5 18 18 C 1.54268 * 110.03271 * 239.57306 * 17 8 6 19 19 C 1.54971 * 104.16011 * 217.13943 * 18 17 8 20 20 C 1.54893 * 102.77666 * 37.88546 * 19 18 17 21 21 C 1.53873 * 110.03188 * 122.35593 * 17 8 6 22 22 N 1.30713 * 108.94865 * 0.02562 * 4 3 2 23 23 N 1.34430 * 125.96636 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.81917 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47512 * 89.97561 * 1 2 3 26 26 H 1.09004 * 109.47046 * 209.97048 * 1 2 3 27 27 H 1.08999 * 109.47675 * 329.96942 * 1 2 3 28 28 H 1.08999 * 109.47261 * 210.00359 * 5 4 3 29 29 H 1.08996 * 109.46700 * 330.00394 * 5 4 3 30 30 H 0.97003 * 120.00114 * 174.71645 * 12 11 9 31 31 H 1.09000 * 110.02253 * 0.96867 * 17 8 6 32 32 H 1.09000 * 110.48533 * 335.78468 * 18 17 8 33 33 H 1.08995 * 110.48595 * 98.43339 * 18 17 8 34 34 H 1.08998 * 110.72020 * 279.57155 * 19 18 17 35 35 H 1.08996 * 110.91989 * 156.29380 * 19 18 17 36 36 H 1.09001 * 110.48577 * 203.40637 * 20 19 18 37 37 H 1.09000 * 110.59707 * 80.81791 * 20 19 18 38 38 H 1.08998 * 110.03339 * 238.56914 * 21 17 8 39 39 H 1.09005 * 110.03395 * 359.94734 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0002 6 6 5.1315 1.9344 1.4207 7 8 4.5138 1.4444 2.3425 8 7 6.1712 2.7558 1.6674 9 6 6.5302 3.0380 2.9600 10 1 6.7844 4.0492 3.2414 11 6 6.5670 2.0229 3.9082 12 7 6.6320 0.7677 3.5248 13 14 6.5241 2.4427 5.7279 14 1 5.2711 3.1771 6.0371 15 1 6.5748 1.1914 6.5259 16 1 7.6931 3.2933 6.0674 17 6 6.9175 3.3471 0.5541 18 6 8.3996 2.9255 0.6284 19 6 9.1756 4.1846 0.1656 20 6 8.3571 5.3408 0.7919 21 6 6.8904 4.8821 0.6576 22 7 3.6195 -0.6167 -0.0015 23 7 2.2965 -1.0880 -0.0005 24 1 2.0094 -2.0146 -0.0006 25 1 -0.3634 0.0004 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5143 28 1 5.5741 1.1515 -0.5146 29 1 4.4699 2.5475 -0.5133 30 1 6.7350 0.0638 4.1843 31 1 6.4861 3.0293 -0.3951 32 1 8.6712 2.6648 1.6513 33 1 8.5925 2.0892 -0.0436 34 1 9.1781 4.2580 -0.9219 35 1 10.1943 4.1782 0.5532 36 1 8.5196 6.2662 0.2393 37 1 8.6210 5.4729 1.8412 38 1 6.4465 5.3092 -0.2416 39 1 6.3211 5.1872 1.5357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597277055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:29 Heat of formation + Delta-G solvation = 53.357129 kcal Electronic energy + Delta-G solvation = -22270.433471 eV Core-core repulsion = 19021.995708 eV Total energy + Delta-G solvation = -3248.437763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.68205 -38.73033 -36.60494 -33.47834 -32.85797 -31.98520 -31.49841 -29.24902 -27.98102 -27.37626 -26.75129 -24.38051 -21.36811 -20.49434 -20.01541 -19.66223 -18.79674 -17.46477 -16.44712 -15.84877 -15.17770 -14.88082 -14.50699 -14.33279 -14.12468 -13.48902 -13.29485 -13.03787 -12.86337 -12.66324 -12.47806 -12.02439 -11.67840 -11.42742 -11.19834 -10.93820 -10.72681 -10.58514 -10.54599 -10.41476 -10.37633 -10.12737 -9.95540 -9.76849 -9.62635 -9.55280 -9.05086 -8.60893 -7.90495 -6.94928 -5.98258 -3.70427 2.01234 3.00795 3.32380 3.38459 3.44211 3.48397 4.25171 4.36675 4.48291 4.91844 5.02009 5.18611 5.26724 5.32561 5.37275 5.43692 5.55891 5.59971 5.76685 5.97453 6.04675 6.07125 6.16025 6.20671 6.23499 6.33780 6.38196 6.51973 6.53324 6.69988 6.71819 6.86311 6.92115 7.05266 7.29285 7.40525 7.75774 8.40651 8.56374 9.19019 9.32219 9.80646 10.44251 11.10693 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.006409 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.337133 B = 4367.843410 C = 5534.851417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.270 3.730 3 N -0.531 5.531 4 C 0.272 3.728 5 C -0.050 4.050 6 C 0.486 3.514 7 O -0.526 6.526 8 N -0.448 5.448 9 C -0.340 4.340 10 H 0.078 0.922 11 C 0.073 3.927 12 N -0.829 5.829 13 Si 0.907 3.093 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.279 1.279 17 C 0.129 3.871 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.117 4.117 21 C -0.131 4.131 22 N -0.304 5.304 23 N -0.490 5.490 24 H 0.434 0.566 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.261 0.739 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 1.043 -9.861 11.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.009 4.009 3 N -0.261 5.261 4 C -0.011 4.011 5 C -0.093 4.093 6 C 0.271 3.729 7 O -0.402 6.402 8 N -0.171 5.171 9 C -0.467 4.467 10 H 0.095 0.905 11 C -0.138 4.138 12 N -0.463 5.463 13 Si 0.735 3.265 14 H -0.201 1.201 15 H -0.215 1.215 16 H -0.205 1.205 17 C 0.024 3.976 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.170 4.170 22 N -0.132 5.132 23 N -0.208 5.208 24 H 0.278 0.722 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.635 0.562 -9.309 10.414 hybrid contribution -0.244 -0.656 0.917 1.153 sum -4.878 -0.094 -8.393 9.708 Atomic orbital electron populations 1.20299 0.84239 1.04712 1.03886 1.24263 0.96342 0.83209 0.97093 1.70273 1.01681 1.29376 1.24726 1.23521 0.92500 0.89658 0.95423 1.20074 0.92149 0.96711 1.00356 1.19406 0.81881 0.83747 0.87894 1.90544 1.53189 1.51097 1.45403 1.43283 1.25103 1.44099 1.04566 1.18730 1.50550 0.93881 0.83556 0.90481 1.25194 0.94684 0.94711 0.99200 1.69833 1.42462 0.99539 1.34434 0.86366 0.78409 0.77464 0.84284 1.20141 1.21503 1.20501 1.21711 0.92652 0.92614 0.90666 1.22664 0.94707 0.95844 1.03151 1.22452 0.98399 0.96028 0.99179 1.22256 0.95519 0.96983 1.00711 1.22459 0.96620 0.96295 1.01581 1.78046 0.95743 1.12673 1.26773 1.47923 1.04693 1.09535 1.58669 0.72190 0.89485 0.90299 0.88593 0.88576 0.88228 0.92847 0.91571 0.89068 0.92980 0.92539 0.92423 0.92972 0.91637 0.92850 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.51 36.00 0.38 -0.31 16 2 C 0.27 4.30 8.24 -155.70 -1.28 3.02 16 3 N -0.53 -10.78 11.19 -8.16 -0.09 -10.87 16 4 C 0.27 5.95 6.63 -156.85 -1.04 4.91 16 5 C -0.05 -1.05 4.64 -29.03 -0.13 -1.19 16 6 C 0.49 12.78 6.96 -10.98 -0.08 12.70 16 7 O -0.53 -16.27 13.68 5.55 0.08 -16.19 16 8 N -0.45 -11.15 2.46 -106.55 -0.26 -11.41 16 9 C -0.34 -9.26 7.45 -14.93 -0.11 -9.37 16 10 H 0.08 2.03 7.08 -52.49 -0.37 1.66 16 11 C 0.07 2.07 4.36 -17.47 -0.08 2.00 16 12 N -0.83 -25.10 11.67 55.50 0.65 -24.46 16 13 Si 0.91 22.53 29.60 -169.99 -5.03 17.50 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.13 2.53 3.20 -66.81 -0.21 2.32 16 18 C -0.13 -2.35 6.42 -25.03 -0.16 -2.51 16 19 C -0.12 -1.85 6.91 -24.69 -0.17 -2.02 16 20 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 21 C -0.13 -2.27 6.19 -25.61 -0.16 -2.42 16 22 N -0.30 -6.47 12.80 32.42 0.41 -6.06 16 23 N -0.49 -7.89 7.45 32.62 0.24 -7.65 16 24 H 0.43 5.00 8.96 -182.33 -1.63 3.36 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 1.88 7.81 -51.93 -0.41 1.48 16 29 H 0.10 1.83 7.78 -51.93 -0.40 1.43 16 30 H 0.26 7.71 8.32 -40.82 -0.34 7.37 16 31 H 0.07 1.17 5.82 -51.93 -0.30 0.87 16 32 H 0.09 2.04 7.10 -51.93 -0.37 1.68 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.48 6.86 -51.93 -0.36 1.13 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -37.24 321.52 -9.16 -46.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.78 Total: 2.75 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.22 Total: 5.14 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.95 Total: -60.45 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.08 Total: -16.19 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.24 -9.16 -46.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597277055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.754 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds